Wall clock time and date at job start Mon Mar 8 2021 05:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86305 * 109.47300 * 2 1 4 4 C 1.50708 * 109.46830 * 240.00415 * 2 1 3 5 5 C 1.38020 * 120.33520 * 119.99912 * 4 2 1 6 6 N 1.31966 * 120.85728 * 179.97438 * 5 4 2 7 7 C 1.32398 * 121.62428 * 359.97438 * 6 5 4 8 8 N 1.39000 * 119.71075 * 179.97438 * 7 6 5 9 9 C 1.46501 * 120.00074 * 180.02562 * 8 7 6 10 10 H 1.08997 * 112.85129 * 23.80022 * 9 8 7 11 11 C 1.53783 * 113.61399 * 155.00409 * 9 8 7 12 12 C 1.53777 * 87.08336 * 89.19394 * 11 9 8 13 13 H 1.09002 * 113.61788 * 270.79878 * 12 11 9 14 14 C 1.50705 * 113.61267 * 139.98157 * 12 11 9 15 15 C 1.38219 * 119.99627 * 120.00288 * 14 12 11 16 16 C 1.38259 * 120.01712 * 180.27939 * 15 14 12 17 17 C 1.38199 * 120.01240 * 359.48295 * 16 15 14 18 18 C 1.38339 * 119.98710 * 0.51678 * 17 16 15 19 19 Br 1.89100 * 120.00962 * 179.76571 * 18 17 16 20 20 C 1.38244 * 119.99124 * 300.01874 * 14 12 11 21 21 C 1.53781 * 87.07998 * 25.43416 * 12 11 9 22 22 C 1.39140 * 120.58452 * 0.27396 * 7 6 5 23 23 C 1.38300 * 119.09804 * 359.47884 * 22 7 6 24 24 H 0.96703 * 113.99995 * 59.99475 * 1 2 3 25 25 H 1.08996 * 109.47757 * 120.00424 * 2 1 3 26 26 H 1.48500 * 109.99559 * 60.00517 * 3 2 1 27 27 H 1.48500 * 109.99881 * 181.32292 * 3 2 1 28 28 H 1.08000 * 119.57290 * 359.97438 * 5 4 2 29 29 H 0.97005 * 119.99715 * 0.02562 * 8 7 6 30 30 H 1.09002 * 113.61256 * 334.64477 * 11 9 8 31 31 H 1.08998 * 113.60824 * 203.74650 * 11 9 8 32 32 H 1.08002 * 119.98676 * 359.97438 * 15 14 12 33 33 H 1.08005 * 119.99359 * 179.72211 * 16 15 14 34 34 H 1.08002 * 120.00119 * 180.25954 * 17 16 15 35 35 H 1.07999 * 120.00623 * 0.02562 * 20 14 12 36 36 H 1.08996 * 113.61667 * 89.12025 * 21 12 11 37 37 H 1.09003 * 113.61130 * 220.01766 * 21 12 11 38 38 H 1.08005 * 120.45473 * 179.70302 * 22 7 6 39 39 H 1.07993 * 120.74945 * 180.26915 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2306 5 6 2.7251 -0.0462 -2.1436 6 7 3.1710 -0.6584 -3.2244 7 6 2.8782 -1.9249 -3.4755 8 7 3.3689 -2.5302 -4.6266 9 6 3.0484 -3.9312 -4.9110 10 1 2.1340 -4.2643 -4.4200 11 6 3.1092 -4.2857 -6.4062 12 6 4.5948 -4.6167 -6.1868 13 1 5.2576 -3.7624 -6.3253 14 6 5.0566 -5.8424 -6.9321 15 6 6.0710 -5.7422 -7.8656 16 6 6.4911 -6.8654 -8.5537 17 6 5.9042 -8.0908 -8.3008 18 6 4.8889 -8.1915 -7.3666 19 35 4.0810 -9.8667 -7.0247 20 6 4.4654 -7.0668 -6.6821 21 6 4.2360 -4.8885 -4.7164 22 6 2.0785 -2.6536 -2.6006 23 6 1.6009 -2.0402 -1.4567 24 1 -0.3933 0.4418 -0.7650 25 1 1.7924 -0.5139 0.8899 26 1 1.5616 2.4678 1.2086 27 1 3.5346 1.7702 -0.0322 28 1 2.9848 0.9878 -1.9714 29 1 3.9235 -2.0250 -5.2415 30 1 2.9444 -3.4325 -7.0642 31 1 2.5039 -5.1516 -6.6745 32 1 6.5322 -4.7854 -8.0610 33 1 7.2807 -6.7859 -9.2864 34 1 6.2354 -8.9688 -8.8354 35 1 3.6723 -7.1448 -5.9532 36 1 3.9390 -5.9192 -4.5227 37 1 4.9811 -4.5220 -4.0102 38 1 1.8371 -3.6853 -2.8099 39 1 0.9817 -2.5820 -0.7572 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14189270_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:54:55 Heat of formation + Delta-G solvation = 77.716000 kcal Electronic energy + Delta-G solvation = -22602.651397 eV Core-core repulsion = 19138.126461 eV Total energy + Delta-G solvation = -3464.524936 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.042 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.69049 -40.98419 -39.31886 -37.82626 -35.38685 -33.48399 -33.28971 -32.12569 -30.84774 -30.23824 -26.84116 -26.71572 -25.76161 -24.75997 -23.57317 -22.81839 -22.20048 -20.10540 -18.96939 -18.41622 -17.94935 -17.37876 -16.65112 -16.53502 -16.26703 -16.07984 -15.87157 -15.54473 -15.34397 -14.85673 -14.66737 -14.50225 -14.37854 -14.19717 -14.02065 -13.53694 -13.44774 -13.32618 -12.89693 -12.43642 -12.28224 -12.13900 -12.09768 -11.85934 -11.61578 -11.32187 -11.20198 -11.04564 -10.74226 -10.41160 -10.36705 -9.85418 -9.63111 -8.69023 -4.98680 0.09221 0.22651 0.26227 0.40512 0.62800 1.34838 1.63975 1.97629 2.05409 2.56523 2.82771 3.43505 3.55076 3.60040 3.63692 3.68173 3.79527 3.83411 3.94995 3.98746 4.05270 4.09736 4.19614 4.29021 4.35889 4.41746 4.49378 4.56510 4.67583 4.75889 4.76232 4.82249 4.94263 4.99604 5.02939 5.03477 5.15480 5.22020 5.33249 5.37415 5.53203 5.58473 5.82641 6.05724 6.54606 6.80634 7.14552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.054 4.054 3 Si 0.766 3.234 4 C -0.236 4.236 5 C 0.145 3.855 6 N -0.564 5.564 7 C 0.398 3.602 8 N -0.701 5.701 9 C 0.130 3.870 10 H 0.108 0.892 11 C -0.128 4.128 12 C -0.068 4.068 13 H 0.106 0.894 14 C -0.068 4.068 15 C -0.107 4.107 16 C -0.115 4.115 17 C -0.109 4.109 18 C -0.102 4.102 19 Br -0.060 7.060 20 C -0.095 4.095 21 C -0.147 4.147 22 C -0.241 4.241 23 C -0.013 4.013 24 H 0.394 0.606 25 H 0.107 0.893 26 H -0.297 1.297 27 H -0.287 1.287 28 H 0.167 0.833 29 H 0.407 0.593 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.101 0.899 37 H 0.066 0.934 38 H 0.151 0.849 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.420 0.854 -3.323 3.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.165 4.165 3 Si 0.673 3.327 4 C -0.242 4.242 5 C -0.012 4.012 6 N -0.282 5.282 7 C 0.162 3.838 8 N -0.332 5.332 9 C 0.024 3.976 10 H 0.126 0.874 11 C -0.166 4.166 12 C -0.087 4.087 13 H 0.124 0.876 14 C -0.069 4.069 15 C -0.126 4.126 16 C -0.134 4.134 17 C -0.129 4.129 18 C -0.181 4.181 19 Br 0.026 6.974 20 C -0.115 4.115 21 C -0.186 4.186 22 C -0.265 4.265 23 C -0.039 4.039 24 H 0.244 0.756 25 H 0.124 0.876 26 H -0.225 1.225 27 H -0.214 1.214 28 H 0.184 0.816 29 H 0.244 0.756 30 H 0.100 0.900 31 H 0.122 0.878 32 H 0.163 0.837 33 H 0.167 0.833 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.119 0.881 37 H 0.085 0.915 38 H 0.168 0.832 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.292 0.750 -2.858 2.969 hybrid contribution 0.231 -0.668 0.482 0.856 sum 0.524 0.082 -2.375 2.434 Atomic orbital electron populations 1.86453 1.17367 1.82102 1.50487 1.24838 0.85080 1.10085 0.96515 0.93854 0.77882 0.75879 0.85108 1.21047 1.05829 0.96815 1.00489 1.22444 0.91645 0.99237 0.87827 1.67131 1.28184 1.09901 1.22945 1.18594 0.89404 0.88384 0.87424 1.44214 1.55623 1.11358 1.22007 1.21919 0.98535 0.79822 0.97322 0.87416 1.23398 0.95099 1.02835 0.95234 1.21591 0.97197 0.95029 0.94838 0.87590 1.19866 0.95884 0.94256 0.96869 1.21524 0.96139 0.99752 0.95140 1.21465 1.00175 0.91736 0.99975 1.21346 0.95137 0.99501 0.96891 1.21946 1.01229 0.92073 1.02869 1.96764 1.81063 1.24229 1.95383 1.21095 1.00299 0.90836 0.99262 1.23656 0.98561 1.00670 0.95698 1.21699 1.04909 1.02752 0.97177 1.21394 0.93962 0.93339 0.95189 0.75599 0.87610 1.22489 1.21394 0.81638 0.75610 0.89981 0.87763 0.83734 0.83287 0.84534 0.84088 0.88074 0.91548 0.83177 0.83782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.09 12.78 -148.98 -1.90 -1.82 16 2 C -0.05 0.03 2.84 71.24 0.20 0.23 16 3 Si 0.77 -1.34 29.82 68.60 2.05 0.70 16 4 C -0.24 -0.19 5.40 -19.76 -0.11 -0.30 16 5 C 0.15 0.30 9.84 84.62 0.83 1.13 16 6 N -0.56 -2.80 10.39 -193.27 -2.01 -4.81 16 7 C 0.40 0.92 7.65 133.07 1.02 1.93 16 8 N -0.70 1.51 5.44 -322.04 -1.75 -0.24 16 9 C 0.13 -0.76 4.11 45.52 0.19 -0.57 16 10 H 0.11 -0.77 6.09 -2.39 -0.01 -0.78 16 11 C -0.13 0.89 7.29 31.12 0.23 1.12 16 12 C -0.07 0.39 3.86 -11.01 -0.04 0.35 16 13 H 0.11 -0.69 8.09 -2.39 -0.02 -0.71 16 14 C -0.07 0.18 5.29 -19.87 -0.11 0.08 16 15 C -0.11 0.30 9.71 22.27 0.22 0.52 16 16 C -0.11 0.24 10.05 22.27 0.22 0.47 16 17 C -0.11 -0.03 9.79 22.28 0.22 0.19 16 18 C -0.10 -0.14 6.22 22.31 0.14 -0.01 16 19 Br -0.06 -0.14 33.70 -20.37 -0.69 -0.83 16 20 C -0.10 0.10 8.35 22.29 0.19 0.28 16 21 C -0.15 0.79 7.25 31.12 0.23 1.01 16 22 C -0.24 -0.06 9.29 22.50 0.21 0.15 16 23 C -0.01 -0.01 9.77 22.44 0.22 0.21 16 24 H 0.39 -3.08 8.70 -74.06 -0.64 -3.73 16 25 H 0.11 0.05 7.96 -2.39 -0.02 0.03 16 26 H -0.30 -1.64 7.11 99.48 0.71 -0.94 16 27 H -0.29 -0.94 7.11 99.48 0.71 -0.23 16 28 H 0.17 -0.31 4.88 -2.91 -0.01 -0.33 16 29 H 0.41 -1.15 8.83 -92.70 -0.82 -1.97 16 30 H 0.08 -0.55 8.14 -2.39 -0.02 -0.57 16 31 H 0.10 -0.77 7.72 -2.39 -0.02 -0.79 16 32 H 0.14 -0.95 8.05 -2.91 -0.02 -0.97 16 33 H 0.15 -0.92 8.06 -2.91 -0.02 -0.94 16 34 H 0.14 -0.20 8.06 -2.91 -0.02 -0.23 16 35 H 0.14 -0.50 6.66 -2.91 -0.02 -0.52 16 36 H 0.10 -0.64 6.31 -2.39 -0.02 -0.65 16 37 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.15 -0.57 6.03 -2.91 -0.02 -0.59 16 39 H 0.14 -0.23 8.06 -2.91 -0.02 -0.25 16 Total: 0.00 -13.78 342.83 -0.77 -14.56 By element: Atomic # 1 Polarization: -14.04 SS G_CDS: -0.32 Total: -14.36 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 3.85 Total: 6.79 kcal Atomic # 7 Polarization: -1.29 SS G_CDS: -3.76 Total: -5.05 kcal Atomic # 8 Polarization: 0.09 SS G_CDS: -1.90 Total: -1.82 kcal Atomic # 14 Polarization: -1.34 SS G_CDS: 2.05 Total: 0.70 kcal Atomic # 35 Polarization: -0.14 SS G_CDS: -0.69 Total: -0.83 kcal Total: -13.78 -0.77 -14.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14189270_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.272 kcal (2) G-P(sol) polarization free energy of solvation -13.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds