Wall clock time and date at job start Mon Mar 8 2021 05:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86298 * 109.47192 * 2 1 4 4 C 1.50707 * 109.46861 * 240.00291 * 2 1 3 5 5 C 1.33327 * 125.95268 * 299.99732 * 4 2 1 6 6 N 1.32116 * 114.57817 * 180.02562 * 5 4 2 7 7 C 1.29683 * 116.86896 * 0.02562 * 6 5 4 8 8 N 1.38616 * 124.95190 * 179.97438 * 7 6 5 9 9 C 1.46496 * 119.99624 * 0.02702 * 8 7 6 10 10 H 1.09000 * 112.91246 * 23.74668 * 9 8 7 11 11 C 1.53786 * 113.61518 * 154.99909 * 9 8 7 12 12 C 1.53781 * 87.17350 * 89.15486 * 11 9 8 13 13 H 1.08997 * 113.61223 * 270.84552 * 12 11 9 14 14 C 1.50703 * 113.61417 * 139.93966 * 12 11 9 15 15 C 1.38217 * 119.99153 * 120.00089 * 14 12 11 16 16 C 1.38264 * 120.01470 * 179.97438 * 15 14 12 17 17 C 1.38187 * 120.01251 * 0.02562 * 16 15 14 18 18 C 1.38348 * 119.99515 * 359.97438 * 17 16 15 19 19 Br 1.89091 * 120.01566 * 179.97438 * 18 17 16 20 20 C 1.38240 * 119.99442 * 299.72569 * 14 12 11 21 21 C 1.53782 * 87.08260 * 25.39213 * 12 11 9 22 22 S 1.70966 * 110.10066 * 0.24180 * 7 6 5 23 23 H 0.96700 * 114.00101 * 299.99991 * 1 2 3 24 24 H 1.09000 * 109.46931 * 120.00470 * 2 1 3 25 25 H 1.48503 * 109.99612 * 178.67997 * 3 2 1 26 26 H 1.48489 * 110.00339 * 300.00121 * 3 2 1 27 27 H 1.08001 * 122.71091 * 0.02911 * 5 4 2 28 28 H 0.97001 * 120.00258 * 180.02562 * 8 7 6 29 29 H 1.09002 * 113.61357 * 334.56403 * 11 9 8 30 30 H 1.09002 * 113.61608 * 203.74565 * 11 9 8 31 31 H 1.07998 * 119.99186 * 0.02562 * 15 14 12 32 32 H 1.08001 * 119.99233 * 180.02562 * 16 15 14 33 33 H 1.08002 * 120.00591 * 180.02562 * 17 16 15 34 34 H 1.07996 * 120.00468 * 359.97438 * 20 14 12 35 35 H 1.08997 * 113.61668 * 89.11298 * 21 12 11 36 36 H 1.08994 * 113.61387 * 220.02033 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2306 5 6 1.6834 -1.9788 -1.5582 6 7 2.2384 -2.3723 -2.6907 7 6 2.9437 -1.4945 -3.3339 8 7 3.5979 -1.7261 -4.5338 9 6 3.5198 -3.0443 -5.1680 10 1 2.6381 -3.6093 -4.8653 11 6 3.7363 -3.0095 -6.6901 12 6 5.2376 -3.1794 -6.4038 13 1 5.7662 -2.2356 -6.2704 14 6 5.9334 -4.1110 -7.3626 15 6 6.9791 -3.6486 -8.1391 16 6 7.6180 -4.5030 -9.0185 17 6 7.2111 -5.8196 -9.1218 18 6 6.1644 -6.2830 -8.3447 19 35 5.6066 -8.0842 -8.4861 20 6 5.5293 -5.4294 -7.4611 21 6 4.8294 -3.8492 -5.0811 22 16 2.9552 -0.0120 -2.4824 23 1 -0.3933 0.4417 0.7650 24 1 1.7923 -0.5139 0.8900 25 1 3.5346 1.7701 0.0321 26 1 1.5615 2.4679 -1.2084 27 1 1.0779 -2.6318 -0.9471 28 1 4.1075 -1.0154 -4.9535 29 1 3.4843 -2.0516 -7.1452 30 1 3.2930 -3.8565 -7.2138 31 1 7.2976 -2.6198 -8.0584 32 1 8.4354 -4.1414 -9.6249 33 1 7.7106 -6.4870 -9.8084 34 1 4.7154 -5.7918 -6.8507 35 1 4.6846 -4.9263 -5.1635 36 1 5.4598 -3.5691 -4.2372 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14189270_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:54:58 Heat of formation + Delta-G solvation = 85.455925 kcal Electronic energy + Delta-G solvation = -21173.607888 eV Core-core repulsion = 17798.570827 eV Total energy + Delta-G solvation = -3375.037061 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.998 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.52029 -40.65859 -39.30954 -37.75612 -35.44575 -33.38280 -32.13007 -31.19181 -30.27259 -27.03799 -26.74973 -26.18379 -24.58205 -23.52690 -22.63780 -21.24669 -20.22119 -19.29844 -18.47507 -18.16242 -17.58176 -16.81475 -16.39847 -16.24426 -16.01937 -15.81222 -15.48450 -15.10834 -14.91219 -14.56466 -14.52818 -14.35682 -14.24438 -13.67554 -13.51339 -13.00701 -12.86690 -12.55003 -12.40946 -12.23748 -12.12712 -11.91147 -11.67448 -11.37013 -11.27111 -11.11358 -10.79089 -10.42756 -10.21946 -9.88333 -9.65868 -8.86067 -5.18718 -0.20727 -0.07059 0.07032 0.23350 0.49375 0.60720 1.23901 1.57345 1.85131 1.92353 2.01606 2.53804 3.34613 3.46624 3.55117 3.60212 3.65191 3.79397 3.89280 3.96797 4.02179 4.18657 4.25057 4.38202 4.48054 4.50296 4.62026 4.63426 4.69376 4.71840 4.90337 4.91712 4.94978 4.99151 5.15069 5.21307 5.34487 5.50993 5.76295 5.80846 6.03309 6.84813 6.92838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.024 4.024 3 Si 0.756 3.244 4 C -0.273 4.273 5 C 0.109 3.891 6 N -0.570 5.570 7 C 0.328 3.672 8 N -0.665 5.665 9 C 0.134 3.866 10 H 0.091 0.909 11 C -0.126 4.126 12 C -0.064 4.064 13 H 0.115 0.885 14 C -0.068 4.068 15 C -0.104 4.104 16 C -0.114 4.114 17 C -0.108 4.108 18 C -0.102 4.102 19 Br -0.061 7.061 20 C -0.098 4.098 21 C -0.142 4.142 22 S 0.059 5.941 23 H 0.405 0.595 24 H 0.106 0.894 25 H -0.273 1.273 26 H -0.285 1.285 27 H 0.188 0.812 28 H 0.424 0.576 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.149 0.851 32 H 0.152 0.848 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.095 0.905 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.568 4.568 2.098 5.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.137 4.137 3 Si 0.660 3.340 4 C -0.395 4.395 5 C -0.041 4.041 6 N -0.297 5.297 7 C -0.042 4.042 8 N -0.304 5.304 9 C 0.026 3.974 10 H 0.110 0.890 11 C -0.165 4.165 12 C -0.082 4.082 13 H 0.133 0.867 14 C -0.069 4.069 15 C -0.122 4.122 16 C -0.132 4.132 17 C -0.127 4.127 18 C -0.182 4.182 19 Br 0.025 6.975 20 C -0.117 4.117 21 C -0.182 4.182 22 S 0.307 5.693 23 H 0.257 0.743 24 H 0.123 0.877 25 H -0.199 1.199 26 H -0.212 1.212 27 H 0.205 0.795 28 H 0.264 0.736 29 H 0.106 0.894 30 H 0.119 0.881 31 H 0.167 0.833 32 H 0.170 0.830 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.113 0.887 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.306 4.445 0.616 5.046 hybrid contribution -0.134 -0.701 0.036 0.715 sum 2.172 3.744 0.652 4.378 Atomic orbital electron populations 1.86461 1.17036 1.82356 1.51513 1.23860 0.85734 1.09744 0.94363 0.94165 0.78564 0.75738 0.85513 1.24670 1.12729 0.97864 1.04278 1.21568 0.97146 0.93561 0.91801 1.66463 1.18136 1.33984 1.11080 1.23950 0.94720 0.92967 0.92591 1.43769 1.53706 1.14486 1.18486 1.21921 0.98946 0.82999 0.93506 0.89037 1.23412 0.94594 1.04314 0.94152 1.21609 0.95192 0.98167 0.93275 0.86690 1.19821 0.96331 0.93342 0.97447 1.21529 0.94709 1.01113 0.94855 1.21483 1.00388 0.92589 0.98787 1.21358 0.95534 0.97206 0.98627 1.21942 1.01534 0.91602 1.03082 1.96761 1.90345 1.12462 1.97974 1.21084 0.99937 0.93180 0.97514 1.23615 0.96920 1.00466 0.97158 1.84080 1.51923 1.15072 1.18247 0.74319 0.87694 1.19881 1.21198 0.79507 0.73607 0.89400 0.88082 0.83313 0.83038 0.84429 0.84648 0.88664 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.19 12.84 -148.98 -1.91 -1.72 16 2 C -0.02 0.01 2.98 71.24 0.21 0.22 16 3 Si 0.76 -1.24 31.05 68.60 2.13 0.89 16 4 C -0.27 -1.63 5.78 24.58 0.14 -1.49 16 5 C 0.11 0.81 11.22 83.54 0.94 1.75 16 6 N -0.57 -5.30 9.83 -202.03 -1.99 -7.29 16 7 C 0.33 1.94 8.09 179.32 1.45 3.39 16 8 N -0.66 -0.02 5.42 -327.60 -1.78 -1.80 16 9 C 0.13 -0.12 4.45 45.58 0.20 0.08 16 10 H 0.09 0.29 7.67 -2.39 -0.02 0.27 16 11 C -0.13 0.56 7.29 31.12 0.23 0.79 16 12 C -0.06 0.30 3.86 -11.01 -0.04 0.25 16 13 H 0.12 -0.85 8.10 -2.39 -0.02 -0.87 16 14 C -0.07 0.11 5.29 -19.87 -0.11 0.01 16 15 C -0.10 0.29 9.71 22.27 0.22 0.51 16 16 C -0.11 0.23 10.05 22.26 0.22 0.45 16 17 C -0.11 -0.09 9.79 22.28 0.22 0.12 16 18 C -0.10 -0.28 6.22 22.31 0.14 -0.14 16 19 Br -0.06 -0.23 33.70 -20.37 -0.69 -0.92 16 20 C -0.10 -0.09 8.37 22.29 0.19 0.10 16 21 C -0.14 0.27 7.26 31.18 0.23 0.49 16 22 S 0.06 0.33 20.57 -56.49 -1.16 -0.84 16 23 H 0.41 -4.58 8.74 -74.06 -0.65 -5.22 16 24 H 0.11 -0.52 7.96 -2.39 -0.02 -0.54 16 25 H -0.27 -0.90 7.11 99.48 0.71 -0.19 16 26 H -0.29 -1.71 7.11 99.48 0.71 -1.00 16 27 H 0.19 0.76 8.06 -2.91 -0.02 0.74 16 28 H 0.42 -2.01 8.83 -92.71 -0.82 -2.82 16 29 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 30 H 0.10 -0.40 7.73 -2.39 -0.02 -0.42 16 31 H 0.15 -1.09 8.05 -2.91 -0.02 -1.12 16 32 H 0.15 -0.97 8.06 -2.91 -0.02 -0.99 16 33 H 0.14 -0.14 8.06 -2.91 -0.02 -0.17 16 34 H 0.14 -0.05 6.64 -2.91 -0.02 -0.07 16 35 H 0.10 -0.15 6.30 -2.39 -0.02 -0.16 16 36 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 Total: 0.00 -16.78 338.45 -1.46 -18.24 By element: Atomic # 1 Polarization: -12.82 SS G_CDS: -0.29 Total: -13.11 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 4.23 Total: 6.55 kcal Atomic # 7 Polarization: -5.32 SS G_CDS: -3.76 Total: -9.09 kcal Atomic # 8 Polarization: 0.19 SS G_CDS: -1.91 Total: -1.72 kcal Atomic # 14 Polarization: -1.24 SS G_CDS: 2.13 Total: 0.89 kcal Atomic # 16 Polarization: 0.33 SS G_CDS: -1.16 Total: -0.84 kcal Atomic # 35 Polarization: -0.23 SS G_CDS: -0.69 Total: -0.92 kcal Total: -16.78 -1.46 -18.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14189270_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.694 kcal (2) G-P(sol) polarization free energy of solvation -16.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds