Wall clock time and date at job start Mon Mar 8 2021 05:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33327 * 125.94848 * 2 1 4 4 C 1.50698 * 122.71348 * 0.02562 * 3 2 1 5 5 O 1.42898 * 109.46812 * 330.00139 * 4 3 2 6 6 Si 1.86293 * 109.47252 * 209.99744 * 4 3 2 7 7 N 1.32121 * 114.57428 * 179.75379 * 3 2 1 8 8 C 1.29680 * 116.86809 * 0.47305 * 7 3 2 9 9 N 1.38615 * 124.94950 * 179.81469 * 8 7 3 10 10 C 1.46502 * 119.99590 * 179.44941 * 9 8 7 11 11 H 1.08995 * 112.85044 * 336.18890 * 10 9 8 12 12 C 1.53784 * 113.61374 * 107.50465 * 10 9 8 13 13 C 1.53781 * 87.08137 * 89.11055 * 12 10 9 14 14 H 1.08996 * 113.61464 * 270.87852 * 13 12 10 15 15 C 1.50701 * 113.68718 * 139.99089 * 13 12 10 16 16 C 1.38194 * 119.99895 * 322.18475 * 15 13 12 17 17 C 1.38349 * 119.98850 * 179.76669 * 16 15 13 18 18 Br 1.89105 * 120.00593 * 180.25686 * 17 16 15 19 19 C 1.38298 * 119.98146 * 0.49071 * 17 16 15 20 20 C 1.38240 * 119.99084 * 359.76577 * 19 17 16 21 21 C 1.38214 * 120.00773 * 0.02562 * 20 19 17 22 22 C 1.53779 * 87.08411 * 25.43064 * 13 12 10 23 23 S 1.70966 * 110.10264 * 359.55038 * 8 7 3 24 24 H 1.08995 * 109.46830 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46994 * 300.02355 * 1 2 3 26 26 H 1.08999 * 109.46783 * 60.02089 * 1 2 3 27 27 H 1.09006 * 109.46956 * 89.99394 * 4 3 2 28 28 H 0.96704 * 113.99990 * 180.02562 * 5 4 3 29 29 H 1.48494 * 110.00103 * 298.68081 * 6 4 3 30 30 H 1.48503 * 109.99892 * 59.99985 * 6 4 3 31 31 H 0.96991 * 119.99725 * 359.72205 * 9 8 7 32 32 H 1.09001 * 113.61148 * 203.65880 * 12 10 9 33 33 H 1.08995 * 113.61612 * 334.56097 * 12 10 9 34 34 H 1.08000 * 120.00057 * 0.02562 * 16 15 13 35 35 H 1.08004 * 120.00245 * 179.78279 * 19 17 16 36 36 H 1.07996 * 119.99741 * 180.02562 * 20 19 17 37 37 H 1.08005 * 119.99023 * 180.02562 * 21 20 19 38 38 H 1.08996 * 113.61416 * 220.02070 * 22 13 12 39 39 H 1.09006 * 113.61563 * 89.11082 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.4811 2.5022 -0.6726 6 14 2.9320 3.6152 -0.8777 7 7 3.5850 0.8188 0.0052 8 6 3.9315 -0.4309 0.0000 9 7 5.2385 -0.8925 0.0004 10 6 5.5065 -2.3328 0.0063 11 1 4.6810 -2.9153 0.4154 12 6 6.0343 -2.8667 -1.3358 13 6 7.4466 -2.5477 -0.8177 14 1 7.7775 -1.5349 -1.0475 15 6 8.4722 -3.5931 -1.1727 16 6 8.1285 -4.9315 -1.1574 17 6 9.0690 -5.8908 -1.4881 18 35 8.5971 -7.7220 -1.4744 19 6 10.3555 -5.5105 -1.8240 20 6 10.6999 -4.1717 -1.8339 21 6 9.7589 -3.2134 -1.5077 22 6 6.8755 -2.7020 0.6018 23 16 2.5413 -1.4261 -0.0001 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5142 0.8898 26 1 -0.3633 0.5135 -0.8902 27 1 1.6095 2.8211 1.0284 28 1 0.0688 3.3762 -0.7108 29 1 4.2368 3.6286 -0.1690 30 1 3.1203 3.1648 -2.2802 31 1 5.9755 -0.2620 0.0008 32 1 5.8536 -3.9315 -1.4835 33 1 5.7370 -2.2630 -2.1932 34 1 7.1247 -5.2283 -0.8914 35 1 11.0909 -6.2593 -2.0788 36 1 11.7044 -3.8746 -2.0966 37 1 10.0282 -2.1675 -1.5159 38 1 7.2573 -1.9653 1.3085 39 1 6.9247 -3.7218 0.9837 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14189270_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:55:02 Heat of formation + Delta-G solvation = 74.749130 kcal Electronic energy + Delta-G solvation = -23249.141830 eV Core-core repulsion = 19718.102868 eV Total energy + Delta-G solvation = -3531.038962 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.014 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.62152 -40.86363 -39.52953 -37.65708 -35.53568 -33.46411 -32.76176 -31.71837 -30.31157 -29.20965 -27.00189 -26.46807 -25.50152 -24.32943 -23.61985 -22.75727 -20.79365 -20.19245 -19.08118 -18.39519 -17.98867 -17.29605 -16.90282 -16.51577 -16.32961 -16.11778 -15.66528 -15.48664 -15.17680 -14.86368 -14.66495 -14.44538 -14.08964 -14.04043 -13.88243 -13.71813 -13.51531 -13.33234 -13.06661 -12.96976 -12.54444 -12.24097 -12.04647 -12.03158 -11.74441 -11.69307 -11.50980 -11.27854 -10.98415 -10.60632 -10.32505 -9.98289 -9.94585 -9.71588 -8.60345 -4.81599 -0.00097 0.05742 0.14473 0.18388 0.59698 0.80147 1.39244 1.73418 1.89582 1.95815 2.37002 2.44570 3.10624 3.14450 3.34620 3.40941 3.62212 3.71747 3.87908 3.95745 3.99428 4.10249 4.16024 4.23191 4.29523 4.39708 4.45016 4.45501 4.49384 4.53610 4.73782 4.77106 4.80550 4.87762 4.92312 4.94339 5.09740 5.16700 5.23512 5.39185 5.41344 5.60513 5.68921 6.22320 6.63436 6.91532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.225 4.225 3 C 0.097 3.903 4 C -0.035 4.035 5 O -0.545 6.545 6 Si 0.712 3.288 7 N -0.548 5.548 8 C 0.319 3.681 9 N -0.678 5.678 10 C 0.126 3.874 11 H 0.099 0.901 12 C -0.149 4.149 13 C -0.072 4.072 14 H 0.102 0.898 15 C -0.066 4.066 16 C -0.089 4.089 17 C -0.087 4.087 18 Br -0.048 7.048 19 C -0.094 4.094 20 C -0.110 4.110 21 C -0.100 4.100 22 C -0.132 4.132 23 S 0.106 5.894 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.385 0.615 29 H -0.252 1.252 30 H -0.264 1.264 31 H 0.412 0.588 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.082 0.918 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.337 2.081 1.009 2.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.348 4.348 3 C -0.032 4.032 4 C -0.147 4.147 5 O -0.351 6.351 6 Si 0.612 3.388 7 N -0.275 5.275 8 C -0.052 4.052 9 N -0.318 5.318 10 C 0.019 3.981 11 H 0.117 0.883 12 C -0.188 4.188 13 C -0.090 4.090 14 H 0.120 0.880 15 C -0.067 4.067 16 C -0.109 4.109 17 C -0.167 4.167 18 Br 0.037 6.963 19 C -0.114 4.114 20 C -0.128 4.128 21 C -0.118 4.118 22 C -0.170 4.170 23 S 0.355 5.645 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.108 0.892 27 H 0.098 0.902 28 H 0.233 0.767 29 H -0.177 1.177 30 H -0.189 1.189 31 H 0.250 0.750 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.147 0.853 38 H 0.101 0.899 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.638 -0.059 0.549 0.843 hybrid contribution 0.324 0.798 0.260 0.899 sum 0.962 0.739 0.809 1.458 Atomic orbital electron populations 1.20106 0.86173 1.01421 1.03932 1.25209 1.01581 0.92428 1.15556 1.18898 0.86380 0.95147 1.02736 1.23961 0.93023 0.96221 1.01488 1.86429 1.33885 1.35716 1.79057 0.96169 0.78902 0.84637 0.79097 1.65690 1.17289 1.16880 1.27623 1.23172 0.91776 0.91295 0.98985 1.43553 1.01780 1.06138 1.80316 1.21969 0.98583 0.79833 0.97698 0.88326 1.23698 0.94602 1.02627 0.97873 1.21584 0.92910 0.97913 0.96620 0.87978 1.19648 0.94579 0.93312 0.99149 1.20947 0.99099 0.91674 0.99164 1.21826 0.96795 0.91065 1.06970 1.96792 1.93157 1.08533 1.97773 1.21184 0.94663 0.96990 0.98578 1.21215 1.00052 0.92256 0.99321 1.21235 0.92640 1.00084 0.97876 1.23442 0.93708 1.03646 0.96238 1.83953 0.96296 1.10408 1.73875 0.92490 0.90879 0.89152 0.90219 0.76664 1.17738 1.18880 0.74951 0.88170 0.90128 0.84905 0.84888 0.84892 0.85347 0.89894 0.87800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.08 8.91 36.01 0.32 0.24 16 2 C -0.23 -0.79 6.50 -36.02 -0.23 -1.03 16 3 C 0.10 0.43 5.95 -84.18 -0.50 -0.07 16 4 C -0.03 -0.05 2.93 36.00 0.11 0.06 16 5 O -0.54 0.08 9.80 -35.23 -0.35 -0.26 16 6 Si 0.71 0.84 32.09 -169.99 -5.45 -4.62 16 7 N -0.55 -2.85 8.96 -11.36 -0.10 -2.95 16 8 C 0.32 1.02 8.24 -87.68 -0.72 0.30 16 9 N -0.68 -0.30 5.42 -54.99 -0.30 -0.60 16 10 C 0.13 -0.20 4.31 -67.11 -0.29 -0.49 16 11 H 0.10 -0.17 7.06 -51.93 -0.37 -0.53 16 12 C -0.15 0.27 7.26 -25.92 -0.19 0.08 16 13 C -0.07 0.15 3.85 -90.96 -0.35 -0.20 16 14 H 0.10 -0.25 8.09 -51.93 -0.42 -0.67 16 15 C -0.07 0.06 5.29 -104.63 -0.55 -0.50 16 16 C -0.09 0.02 8.34 -39.56 -0.33 -0.31 16 17 C -0.09 -0.06 6.22 -39.52 -0.25 -0.31 16 18 Br -0.05 -0.05 33.70 -68.01 -2.29 -2.34 16 19 C -0.09 -0.01 9.79 -39.56 -0.39 -0.40 16 20 C -0.11 0.08 10.05 -39.59 -0.40 -0.32 16 21 C -0.10 0.09 9.71 -39.58 -0.38 -0.30 16 22 C -0.13 0.34 7.29 -25.92 -0.19 0.16 16 23 S 0.11 0.23 21.69 -107.50 -2.33 -2.10 16 24 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 25 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 26 H 0.09 0.16 6.74 -51.93 -0.35 -0.19 16 27 H 0.08 -0.01 7.96 -51.93 -0.41 -0.43 16 28 H 0.39 -2.03 8.74 45.56 0.40 -1.63 16 29 H -0.25 -1.18 7.11 56.52 0.40 -0.77 16 30 H -0.26 -1.40 7.11 56.52 0.40 -1.00 16 31 H 0.41 -0.07 8.82 -40.82 -0.36 -0.43 16 32 H 0.10 -0.24 6.33 -51.93 -0.33 -0.57 16 33 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 34 H 0.13 -0.19 6.68 -52.49 -0.35 -0.54 16 35 H 0.13 -0.12 8.06 -52.48 -0.42 -0.55 16 36 H 0.13 -0.34 8.06 -52.49 -0.42 -0.76 16 37 H 0.13 -0.32 8.05 -52.48 -0.42 -0.74 16 38 H 0.08 -0.21 8.14 -51.93 -0.42 -0.64 16 39 H 0.10 -0.31 7.71 -51.93 -0.40 -0.71 16 LS Contribution 355.39 15.07 5.36 5.36 Total: 0.00 -7.43 355.39 -14.56 -21.99 By element: Atomic # 1 Polarization: -6.65 SS G_CDS: -4.75 Total: -11.40 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -4.35 Total: -3.08 kcal Atomic # 7 Polarization: -3.15 SS G_CDS: -0.40 Total: -3.55 kcal Atomic # 8 Polarization: 0.08 SS G_CDS: -0.35 Total: -0.26 kcal Atomic # 14 Polarization: 0.84 SS G_CDS: -5.45 Total: -4.62 kcal Atomic # 16 Polarization: 0.23 SS G_CDS: -2.33 Total: -2.10 kcal Atomic # 35 Polarization: -0.05 SS G_CDS: -2.29 Total: -2.34 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -7.43 -14.56 -21.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14189270_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.744 kcal (2) G-P(sol) polarization free energy of solvation -7.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds