Wall clock time and date at job start Mon Mar 8 2021 05:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33327 * 125.94848 * 2 1 4 4 C 1.50698 * 122.71348 * 0.02562 * 3 2 1 5 5 O 1.42898 * 109.46812 * 330.00139 * 4 3 2 6 6 Si 1.86293 * 109.47252 * 209.99744 * 4 3 2 7 7 N 1.32121 * 114.57428 * 179.75379 * 3 2 1 8 8 C 1.29680 * 116.86809 * 0.47305 * 7 3 2 9 9 N 1.38615 * 124.94950 * 179.81469 * 8 7 3 10 10 C 1.46502 * 119.99590 * 179.44941 * 9 8 7 11 11 H 1.08995 * 112.85044 * 336.18890 * 10 9 8 12 12 C 1.53784 * 113.61374 * 107.50465 * 10 9 8 13 13 C 1.53781 * 87.08137 * 89.11055 * 12 10 9 14 14 H 1.08996 * 113.61464 * 270.87852 * 13 12 10 15 15 C 1.50701 * 113.68718 * 139.99089 * 13 12 10 16 16 C 1.38194 * 119.99895 * 322.18475 * 15 13 12 17 17 C 1.38349 * 119.98850 * 179.76669 * 16 15 13 18 18 Br 1.89105 * 120.00593 * 180.25686 * 17 16 15 19 19 C 1.38298 * 119.98146 * 0.49071 * 17 16 15 20 20 C 1.38240 * 119.99084 * 359.76577 * 19 17 16 21 21 C 1.38214 * 120.00773 * 0.02562 * 20 19 17 22 22 C 1.53779 * 87.08411 * 25.43064 * 13 12 10 23 23 S 1.70966 * 110.10264 * 359.55038 * 8 7 3 24 24 H 1.08995 * 109.46830 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46994 * 300.02355 * 1 2 3 26 26 H 1.08999 * 109.46783 * 60.02089 * 1 2 3 27 27 H 1.09006 * 109.46956 * 89.99394 * 4 3 2 28 28 H 0.96704 * 113.99990 * 180.02562 * 5 4 3 29 29 H 1.48494 * 110.00103 * 298.68081 * 6 4 3 30 30 H 1.48503 * 109.99892 * 59.99985 * 6 4 3 31 31 H 0.96991 * 119.99725 * 359.72205 * 9 8 7 32 32 H 1.09001 * 113.61148 * 203.65880 * 12 10 9 33 33 H 1.08995 * 113.61612 * 334.56097 * 12 10 9 34 34 H 1.08000 * 120.00057 * 0.02562 * 16 15 13 35 35 H 1.08004 * 120.00245 * 179.78279 * 19 17 16 36 36 H 1.07996 * 119.99741 * 180.02562 * 20 19 17 37 37 H 1.08005 * 119.99023 * 180.02562 * 21 20 19 38 38 H 1.08996 * 113.61416 * 220.02070 * 22 13 12 39 39 H 1.09006 * 113.61563 * 89.11082 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.4811 2.5022 -0.6726 6 14 2.9320 3.6152 -0.8777 7 7 3.5850 0.8188 0.0052 8 6 3.9315 -0.4309 0.0000 9 7 5.2385 -0.8925 0.0004 10 6 5.5065 -2.3328 0.0063 11 1 4.6810 -2.9153 0.4154 12 6 6.0343 -2.8667 -1.3358 13 6 7.4466 -2.5477 -0.8177 14 1 7.7775 -1.5349 -1.0475 15 6 8.4722 -3.5931 -1.1727 16 6 8.1285 -4.9315 -1.1574 17 6 9.0690 -5.8908 -1.4881 18 35 8.5971 -7.7220 -1.4744 19 6 10.3555 -5.5105 -1.8240 20 6 10.6999 -4.1717 -1.8339 21 6 9.7589 -3.2134 -1.5077 22 6 6.8755 -2.7020 0.6018 23 16 2.5413 -1.4261 -0.0001 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5142 0.8898 26 1 -0.3633 0.5135 -0.8902 27 1 1.6095 2.8211 1.0284 28 1 0.0688 3.3762 -0.7108 29 1 4.2368 3.6286 -0.1690 30 1 3.1203 3.1648 -2.2802 31 1 5.9755 -0.2620 0.0008 32 1 5.8536 -3.9315 -1.4835 33 1 5.7370 -2.2630 -2.1932 34 1 7.1247 -5.2283 -0.8914 35 1 11.0909 -6.2593 -2.0788 36 1 11.7044 -3.8746 -2.0966 37 1 10.0282 -2.1675 -1.5159 38 1 7.2573 -1.9653 1.3085 39 1 6.9247 -3.7218 0.9837 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14189270_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:55:01 Heat of formation + Delta-G solvation = 80.500865 kcal Electronic energy + Delta-G solvation = -23248.892416 eV Core-core repulsion = 19718.102868 eV Total energy + Delta-G solvation = -3530.789548 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.014 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.56406 -40.99054 -39.46860 -37.65913 -35.56721 -33.44202 -32.82151 -31.69972 -30.28721 -29.29398 -26.85566 -26.40296 -25.61697 -24.43637 -23.56338 -22.70272 -20.80126 -20.23993 -19.14932 -18.36513 -17.96259 -17.38439 -16.83021 -16.54270 -16.32046 -16.14496 -15.72248 -15.49503 -15.18268 -14.81531 -14.61588 -14.37044 -14.26858 -14.13227 -13.96694 -13.56583 -13.54235 -13.43530 -13.05380 -12.99104 -12.44876 -12.33848 -12.20905 -11.94809 -11.84045 -11.66585 -11.42518 -11.30001 -11.02772 -10.80146 -10.42733 -10.08744 -9.89891 -9.67764 -8.73079 -4.96492 -0.13007 0.02705 0.05086 0.21395 0.59504 0.62941 1.26404 1.65350 1.74806 1.76839 2.20112 2.51525 3.09966 3.27117 3.46711 3.52359 3.75028 3.83344 3.94948 3.98677 4.07082 4.11944 4.21809 4.27878 4.30726 4.37267 4.42868 4.57258 4.64528 4.66599 4.80938 4.85632 4.87203 4.89102 4.91529 4.98933 5.09550 5.16955 5.31268 5.33608 5.47392 5.59844 5.78011 6.15800 6.74721 6.94814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.242 4.242 3 C 0.070 3.930 4 C -0.035 4.035 5 O -0.552 6.552 6 Si 0.811 3.189 7 N -0.583 5.583 8 C 0.308 3.692 9 N -0.672 5.672 10 C 0.123 3.877 11 H 0.102 0.898 12 C -0.145 4.145 13 C -0.067 4.067 14 H 0.107 0.893 15 C -0.068 4.068 16 C -0.095 4.095 17 C -0.101 4.101 18 Br -0.058 7.058 19 C -0.107 4.107 20 C -0.114 4.114 21 C -0.107 4.107 22 C -0.122 4.122 23 S 0.128 5.872 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.407 0.593 29 H -0.302 1.302 30 H -0.323 1.323 31 H 0.414 0.586 32 H 0.108 0.892 33 H 0.068 0.932 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.150 0.850 37 H 0.144 0.856 38 H 0.086 0.914 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.759 2.306 1.513 2.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.365 4.365 3 C -0.058 4.058 4 C -0.147 4.147 5 O -0.362 6.362 6 Si 0.719 3.281 7 N -0.312 5.312 8 C -0.063 4.063 9 N -0.312 5.312 10 C 0.017 3.983 11 H 0.120 0.880 12 C -0.184 4.184 13 C -0.086 4.086 14 H 0.125 0.875 15 C -0.069 4.069 16 C -0.115 4.115 17 C -0.181 4.181 18 Br 0.027 6.973 19 C -0.127 4.127 20 C -0.133 4.133 21 C -0.125 4.125 22 C -0.160 4.160 23 S 0.377 5.623 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.260 0.740 29 H -0.231 1.231 30 H -0.252 1.252 31 H 0.253 0.747 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.168 0.832 37 H 0.162 0.838 38 H 0.104 0.896 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.191 0.180 1.068 1.099 hybrid contribution 0.537 0.706 0.044 0.888 sum 0.728 0.886 1.112 1.597 Atomic orbital electron populations 1.20114 0.84943 1.01980 1.04100 1.25563 1.02647 0.92762 1.15552 1.19417 0.86442 0.96774 1.03153 1.23978 0.93549 0.94547 1.02622 1.86387 1.33053 1.37924 1.78840 0.95346 0.76171 0.82706 0.73862 1.65756 1.18116 1.18067 1.29218 1.23483 0.92933 0.91343 0.98580 1.43719 1.01003 1.07028 1.79402 1.22092 0.99319 0.78722 0.98172 0.88015 1.23677 0.94787 1.02828 0.97157 1.21575 0.92352 0.97791 0.96842 0.87535 1.19782 0.94941 0.93284 0.98875 1.21089 0.99403 0.91833 0.99166 1.21945 0.97395 0.90759 1.07971 1.96770 1.93220 1.09444 1.97851 1.21361 0.94711 0.97688 0.98899 1.21464 1.00980 0.91916 0.98926 1.21512 0.92614 1.00961 0.97388 1.23400 0.92547 1.04103 0.95965 1.83749 0.95406 1.09580 1.73613 0.91732 0.90161 0.89410 0.88280 0.74015 1.23097 1.25232 0.74750 0.87407 0.91341 0.84072 0.84400 0.83214 0.83808 0.89574 0.87049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.13 8.91 71.24 0.63 0.50 16 2 C -0.24 -1.75 6.50 24.58 0.16 -1.59 16 3 C 0.07 0.66 5.95 41.40 0.25 0.90 16 4 C -0.03 -0.09 2.93 71.24 0.21 0.12 16 5 O -0.55 0.61 9.80 -148.98 -1.46 -0.85 16 6 Si 0.81 2.69 32.09 68.60 2.20 4.89 16 7 N -0.58 -6.73 8.96 -189.86 -1.70 -8.43 16 8 C 0.31 2.20 8.24 179.32 1.48 3.68 16 9 N -0.67 -0.91 5.42 -327.89 -1.78 -2.69 16 10 C 0.12 -0.41 4.31 45.52 0.20 -0.21 16 11 H 0.10 -0.38 7.06 -2.39 -0.02 -0.39 16 12 C -0.15 0.54 7.26 31.12 0.23 0.77 16 13 C -0.07 0.32 3.85 -11.01 -0.04 0.27 16 14 H 0.11 -0.58 8.09 -2.39 -0.02 -0.60 16 15 C -0.07 0.14 5.29 -19.87 -0.11 0.04 16 16 C -0.10 0.06 8.34 22.29 0.19 0.24 16 17 C -0.10 -0.17 6.22 22.31 0.14 -0.03 16 18 Br -0.06 -0.15 33.70 -20.37 -0.69 -0.84 16 19 C -0.11 -0.05 9.79 22.28 0.22 0.17 16 20 C -0.11 0.21 10.05 22.26 0.22 0.43 16 21 C -0.11 0.25 9.71 22.27 0.22 0.47 16 22 C -0.12 0.71 7.29 31.12 0.23 0.94 16 23 S 0.13 0.58 21.69 -56.49 -1.23 -0.64 16 24 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 25 H 0.08 0.07 8.14 -2.38 -0.02 0.05 16 26 H 0.09 0.27 6.74 -2.39 -0.02 0.25 16 27 H 0.10 -0.13 7.96 -2.38 -0.02 -0.15 16 28 H 0.41 -4.91 8.74 -74.05 -0.65 -5.55 16 29 H -0.30 -3.44 7.11 99.48 0.71 -2.74 16 30 H -0.32 -4.24 7.11 99.48 0.71 -3.53 16 31 H 0.41 0.12 8.82 -92.71 -0.82 -0.70 16 32 H 0.11 -0.56 6.33 -2.39 -0.02 -0.57 16 33 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 34 H 0.14 -0.44 6.68 -2.91 -0.02 -0.46 16 35 H 0.14 -0.20 8.06 -2.91 -0.02 -0.22 16 36 H 0.15 -0.88 8.06 -2.91 -0.02 -0.91 16 37 H 0.14 -0.85 8.05 -2.91 -0.02 -0.88 16 38 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H 0.11 -0.77 7.71 -2.38 -0.02 -0.78 16 Total: 0.00 -18.85 355.39 -0.76 -19.61 By element: Atomic # 1 Polarization: -17.44 SS G_CDS: -0.32 Total: -17.76 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 4.21 Total: 6.70 kcal Atomic # 7 Polarization: -7.64 SS G_CDS: -3.48 Total: -11.12 kcal Atomic # 8 Polarization: 0.61 SS G_CDS: -1.46 Total: -0.85 kcal Atomic # 14 Polarization: 2.69 SS G_CDS: 2.20 Total: 4.89 kcal Atomic # 16 Polarization: 0.58 SS G_CDS: -1.23 Total: -0.64 kcal Atomic # 35 Polarization: -0.15 SS G_CDS: -0.69 Total: -0.84 kcal Total: -18.85 -0.76 -19.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14189270_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.115 kcal (2) G-P(sol) polarization free energy of solvation -18.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds