Wall clock time and date at job start Mon Mar 8 2021 05:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86309 * 109.46855 * 2 1 4 4 C 1.50698 * 109.47070 * 240.00307 * 2 1 3 5 5 C 1.37985 * 120.32740 * 119.97650 * 4 2 1 6 6 N 1.32016 * 120.89775 * 179.76688 * 5 4 2 7 7 C 1.32333 * 121.64296 * 0.51957 * 6 5 4 8 8 N 1.39151 * 119.71499 * 179.75526 * 7 6 5 9 9 C 1.46500 * 119.99770 * 359.72651 * 8 7 6 10 10 H 1.09002 * 112.85112 * 23.80275 * 9 8 7 11 11 C 1.53780 * 113.61095 * 155.00153 * 9 8 7 12 12 C 1.53778 * 87.08300 * 89.20158 * 11 9 8 13 13 H 1.09003 * 113.61023 * 270.79617 * 12 11 9 14 14 C 1.50699 * 113.61512 * 139.98075 * 12 11 9 15 15 C 1.38224 * 119.99661 * 121.52772 * 14 12 11 16 16 C 1.38260 * 120.02069 * 179.97438 * 15 14 12 17 17 C 1.38197 * 120.00789 * 0.28248 * 16 15 14 18 18 C 1.38349 * 119.99163 * 359.46466 * 17 16 15 19 19 Br 1.89097 * 120.00930 * 180.27891 * 18 17 16 20 20 C 1.38242 * 119.99408 * 301.54794 * 14 12 11 21 21 C 1.53779 * 87.17381 * 25.38781 * 12 11 9 22 22 C 1.39347 * 120.56674 * 359.48203 * 7 6 5 23 23 F 1.35098 * 120.46692 * 180.27872 * 22 7 6 24 24 C 1.38433 * 119.05556 * 0.25266 * 22 7 6 25 25 H 0.96702 * 113.99917 * 299.99837 * 1 2 3 26 26 H 1.08995 * 109.47351 * 119.99726 * 2 1 3 27 27 H 1.48502 * 109.99758 * 178.68411 * 3 2 1 28 28 H 1.48501 * 109.99932 * 299.99828 * 3 2 1 29 29 H 1.08002 * 119.55085 * 0.02562 * 5 4 2 30 30 H 0.96996 * 119.99895 * 179.72573 * 8 7 6 31 31 H 1.09000 * 113.61344 * 334.64555 * 11 9 8 32 32 H 1.09003 * 113.68841 * 203.76144 * 11 9 8 33 33 H 1.08001 * 119.98470 * 359.97438 * 15 14 12 34 34 H 1.08002 * 119.99108 * 179.97438 * 16 15 14 35 35 H 1.08004 * 120.00055 * 179.72824 * 17 16 15 36 36 H 1.08001 * 120.00669 * 0.02562 * 20 14 12 37 37 H 1.09002 * 113.61421 * 89.15854 * 21 12 11 38 38 H 1.08998 * 113.61779 * 220.06137 * 21 12 11 39 39 H 1.08001 * 120.75925 * 180.02562 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7246 -0.0461 -2.1434 6 7 3.1746 -0.6587 -3.2228 7 6 2.8779 -1.9228 -3.4781 8 7 3.3699 -2.5275 -4.6308 9 6 4.2075 -1.7632 -5.5585 10 1 4.7087 -0.9214 -5.0808 11 6 5.1458 -2.6390 -6.4055 12 6 4.0045 -2.7318 -7.4319 13 1 3.3256 -3.5662 -7.2557 14 6 4.4709 -2.6489 -8.8625 15 6 4.1977 -3.6818 -9.7393 16 6 4.6249 -3.6061 -11.0521 17 6 5.3305 -2.5001 -11.4866 18 6 5.5997 -1.4636 -10.6106 19 35 6.5582 0.0535 -11.2067 20 6 5.1724 -1.5399 -9.2975 21 6 3.4942 -1.3936 -6.8718 22 6 2.0817 -2.6552 -2.5998 23 9 1.7846 -3.9472 -2.8597 24 6 1.5999 -2.0401 -1.4570 25 1 -0.3933 0.4417 0.7651 26 1 1.7923 -0.5138 0.8900 27 1 3.5345 1.7704 0.0320 28 1 1.5614 2.4679 -1.2085 29 1 2.9844 0.9879 -1.9705 30 1 3.1582 -3.4550 -4.8200 31 1 5.3922 -3.5928 -5.9390 32 1 6.0238 -2.1095 -6.7754 33 1 3.6502 -4.5483 -9.3989 34 1 4.4115 -4.4137 -11.7367 35 1 5.6680 -2.4430 -12.5109 36 1 5.3865 -0.7332 -8.6121 37 1 3.9192 -0.5216 -7.3690 38 1 2.4091 -1.3434 -6.7813 39 1 0.9808 -2.5819 -0.7573 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14189270_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:55:05 Heat of formation + Delta-G solvation = 27.704803 kcal Electronic energy + Delta-G solvation = -25093.325635 eV Core-core repulsion = 21157.178075 eV Total energy + Delta-G solvation = -3936.147560 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.032 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -49.89371 -41.69775 -41.07352 -39.38149 -37.89146 -35.63566 -33.44853 -33.23682 -32.26393 -30.96815 -30.24891 -26.94945 -26.80215 -26.10153 -24.86775 -23.52721 -22.84757 -22.45190 -20.31054 -19.51094 -18.59752 -18.25570 -18.00595 -17.96559 -16.88198 -16.78633 -16.65532 -16.16690 -16.08970 -15.52173 -15.36838 -15.06184 -14.91757 -14.69614 -14.53551 -14.39201 -14.34473 -13.93747 -13.91297 -13.60288 -13.54322 -12.95926 -12.59089 -12.46184 -12.20881 -12.08125 -11.96420 -11.66856 -11.37001 -11.25458 -11.16647 -10.77332 -10.68532 -10.34742 -9.90128 -9.65905 -8.79848 -5.05260 -0.11137 0.05593 0.10510 0.20596 0.64606 1.19732 1.58036 1.86236 1.89507 2.48420 2.51616 3.01483 3.13886 3.28976 3.36633 3.52829 3.58267 3.62026 3.73950 3.80639 3.84656 3.95693 4.03273 4.09523 4.19342 4.24538 4.32889 4.45366 4.49279 4.59451 4.61596 4.64561 4.74185 4.84835 4.88607 4.93752 4.95840 5.03654 5.15899 5.28489 5.38795 5.47141 5.74566 5.93038 6.13202 6.54886 6.91065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.059 4.059 3 Si 0.682 3.318 4 C -0.162 4.162 5 C 0.142 3.858 6 N -0.509 5.509 7 C 0.392 3.608 8 N -0.699 5.699 9 C 0.133 3.867 10 H 0.110 0.890 11 C -0.138 4.138 12 C -0.074 4.074 13 H 0.100 0.900 14 C -0.065 4.065 15 C -0.101 4.101 16 C -0.110 4.110 17 C -0.096 4.096 18 C -0.087 4.087 19 Br -0.049 7.049 20 C -0.089 4.089 21 C -0.146 4.146 22 C -0.017 4.017 23 F -0.132 7.132 24 C -0.034 4.034 25 H 0.384 0.616 26 H 0.077 0.923 27 H -0.251 1.251 28 H -0.247 1.247 29 H 0.155 0.845 30 H 0.413 0.587 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.816 -0.038 3.836 3.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.171 4.171 3 Si 0.582 3.418 4 C -0.167 4.167 5 C -0.015 4.015 6 N -0.225 5.225 7 C 0.154 3.846 8 N -0.332 5.332 9 C 0.027 3.973 10 H 0.128 0.872 11 C -0.176 4.176 12 C -0.093 4.093 13 H 0.118 0.882 14 C -0.066 4.066 15 C -0.120 4.120 16 C -0.129 4.129 17 C -0.115 4.115 18 C -0.167 4.167 19 Br 0.036 6.964 20 C -0.108 4.108 21 C -0.185 4.185 22 C -0.044 4.044 23 F -0.111 7.111 24 C -0.060 4.060 25 H 0.232 0.768 26 H 0.095 0.905 27 H -0.176 1.176 28 H -0.171 1.171 29 H 0.171 0.829 30 H 0.250 0.750 31 H 0.096 0.904 32 H 0.118 0.882 33 H 0.146 0.854 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.765 1.333 1.903 2.446 hybrid contribution -0.880 -2.021 0.300 2.225 sum -0.115 -0.689 2.203 2.311 Atomic orbital electron populations 1.86491 1.17177 1.81858 1.49819 1.24468 0.85757 1.10243 0.96593 0.95093 0.80898 0.77930 0.87856 1.19949 1.03600 0.94424 0.98769 1.22139 0.92758 0.98600 0.88010 1.67262 1.26319 1.07582 1.21368 1.18367 0.90184 0.89044 0.87054 1.44201 1.54464 1.14261 1.20236 1.21847 0.91371 0.95304 0.88757 0.87245 1.23469 0.97196 1.01136 0.95784 1.21622 0.98163 0.99454 0.90013 0.88225 1.19695 0.97614 0.93851 0.95398 1.21235 0.99033 0.98363 0.93321 1.21207 0.97680 0.97867 0.96142 1.21170 0.98083 0.92695 0.99594 1.21822 1.03445 0.94959 0.96432 1.96783 1.73224 1.36767 1.89591 1.20958 0.97489 0.98443 0.93936 1.23646 1.01704 0.96901 0.96201 1.17963 1.06720 0.80943 0.98734 1.91493 1.92191 1.33446 1.93963 1.21258 0.95793 0.94189 0.94798 0.76815 0.90531 1.17555 1.17121 0.82872 0.74969 0.90369 0.88202 0.85378 0.84940 0.84942 0.84900 0.88641 0.90623 0.83042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.40 12.75 -35.23 -0.45 -0.05 16 2 C -0.06 0.06 2.83 36.00 0.10 0.16 16 3 Si 0.68 -1.39 29.82 -169.99 -5.07 -6.46 16 4 C -0.16 -0.28 5.43 -104.47 -0.57 -0.84 16 5 C 0.14 0.36 9.84 -17.56 -0.17 0.19 16 6 N -0.51 -1.73 9.13 -12.36 -0.11 -1.84 16 7 C 0.39 1.03 7.49 -154.85 -1.16 -0.13 16 8 N -0.70 -0.38 5.42 -52.97 -0.29 -0.67 16 9 C 0.13 -0.04 4.36 -67.03 -0.29 -0.33 16 10 H 0.11 0.09 7.40 -51.93 -0.38 -0.29 16 11 C -0.14 0.21 7.29 -25.92 -0.19 0.02 16 12 C -0.07 0.10 3.85 -90.96 -0.35 -0.25 16 13 H 0.10 -0.19 8.09 -51.93 -0.42 -0.61 16 14 C -0.06 0.01 5.29 -104.63 -0.55 -0.55 16 15 C -0.10 0.03 9.71 -39.58 -0.38 -0.35 16 16 C -0.11 0.02 10.05 -39.59 -0.40 -0.37 16 17 C -0.10 -0.06 9.79 -39.56 -0.39 -0.45 16 18 C -0.09 -0.12 6.22 -39.52 -0.25 -0.37 16 19 Br -0.05 -0.08 33.70 -68.01 -2.29 -2.37 16 20 C -0.09 -0.05 8.28 -39.56 -0.33 -0.38 16 21 C -0.15 0.08 7.27 -25.83 -0.19 -0.11 16 22 C -0.02 -0.04 7.35 -39.10 -0.29 -0.33 16 23 F -0.13 -0.34 16.65 2.25 0.04 -0.31 16 24 C -0.03 -0.06 9.75 -39.26 -0.38 -0.45 16 25 H 0.38 -2.20 8.74 45.56 0.40 -1.80 16 26 H 0.08 -0.21 7.96 -51.93 -0.41 -0.63 16 27 H -0.25 -0.05 7.11 56.52 0.40 0.35 16 28 H -0.25 -0.29 7.11 56.52 0.40 0.12 16 29 H 0.15 0.22 4.88 -52.49 -0.26 -0.04 16 30 H 0.41 -0.30 8.17 -40.82 -0.33 -0.63 16 31 H 0.08 -0.13 8.14 -51.93 -0.42 -0.56 16 32 H 0.10 -0.16 7.64 -51.93 -0.40 -0.56 16 33 H 0.13 -0.26 8.05 -52.49 -0.42 -0.68 16 34 H 0.13 -0.29 8.06 -52.49 -0.42 -0.71 16 35 H 0.13 -0.06 8.06 -52.48 -0.42 -0.48 16 36 H 0.13 -0.04 6.73 -52.49 -0.35 -0.40 16 37 H 0.10 -0.07 6.40 -51.93 -0.33 -0.40 16 38 H 0.08 0.05 8.14 -51.93 -0.42 -0.38 16 39 H 0.15 0.06 8.06 -52.49 -0.42 -0.37 16 LS Contribution 350.99 15.07 5.29 5.29 Total: 0.00 -6.13 350.99 -12.89 -19.02 By element: Atomic # 1 Polarization: -3.85 SS G_CDS: -4.22 Total: -8.07 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -5.78 Total: -4.54 kcal Atomic # 7 Polarization: -2.11 SS G_CDS: -0.40 Total: -2.50 kcal Atomic # 8 Polarization: 0.40 SS G_CDS: -0.45 Total: -0.05 kcal Atomic # 9 Polarization: -0.34 SS G_CDS: 0.04 Total: -0.31 kcal Atomic # 14 Polarization: -1.39 SS G_CDS: -5.07 Total: -6.46 kcal Atomic # 35 Polarization: -0.08 SS G_CDS: -2.29 Total: -2.37 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -6.13 -12.89 -19.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14189270_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.728 kcal (2) G-P(sol) polarization free energy of solvation -6.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds