Wall clock time and date at job start Mon Mar 8 2021 05:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86309 * 109.46855 * 2 1 4 4 C 1.50698 * 109.47070 * 240.00307 * 2 1 3 5 5 C 1.37985 * 120.32740 * 119.97650 * 4 2 1 6 6 N 1.32016 * 120.89775 * 179.76688 * 5 4 2 7 7 C 1.32333 * 121.64296 * 0.51957 * 6 5 4 8 8 N 1.39151 * 119.71499 * 179.75526 * 7 6 5 9 9 C 1.46500 * 119.99770 * 359.72651 * 8 7 6 10 10 H 1.09002 * 112.85112 * 23.80275 * 9 8 7 11 11 C 1.53780 * 113.61095 * 155.00153 * 9 8 7 12 12 C 1.53778 * 87.08300 * 89.20158 * 11 9 8 13 13 H 1.09003 * 113.61023 * 270.79617 * 12 11 9 14 14 C 1.50699 * 113.61512 * 139.98075 * 12 11 9 15 15 C 1.38224 * 119.99661 * 121.52772 * 14 12 11 16 16 C 1.38260 * 120.02069 * 179.97438 * 15 14 12 17 17 C 1.38197 * 120.00789 * 0.28248 * 16 15 14 18 18 C 1.38349 * 119.99163 * 359.46466 * 17 16 15 19 19 Br 1.89097 * 120.00930 * 180.27891 * 18 17 16 20 20 C 1.38242 * 119.99408 * 301.54794 * 14 12 11 21 21 C 1.53779 * 87.17381 * 25.38781 * 12 11 9 22 22 C 1.39347 * 120.56674 * 359.48203 * 7 6 5 23 23 F 1.35098 * 120.46692 * 180.27872 * 22 7 6 24 24 C 1.38433 * 119.05556 * 0.25266 * 22 7 6 25 25 H 0.96702 * 113.99917 * 299.99837 * 1 2 3 26 26 H 1.08995 * 109.47351 * 119.99726 * 2 1 3 27 27 H 1.48502 * 109.99758 * 178.68411 * 3 2 1 28 28 H 1.48501 * 109.99932 * 299.99828 * 3 2 1 29 29 H 1.08002 * 119.55085 * 0.02562 * 5 4 2 30 30 H 0.96996 * 119.99895 * 179.72573 * 8 7 6 31 31 H 1.09000 * 113.61344 * 334.64555 * 11 9 8 32 32 H 1.09003 * 113.68841 * 203.76144 * 11 9 8 33 33 H 1.08001 * 119.98470 * 359.97438 * 15 14 12 34 34 H 1.08002 * 119.99108 * 179.97438 * 16 15 14 35 35 H 1.08004 * 120.00055 * 179.72824 * 17 16 15 36 36 H 1.08001 * 120.00669 * 0.02562 * 20 14 12 37 37 H 1.09002 * 113.61421 * 89.15854 * 21 12 11 38 38 H 1.08998 * 113.61779 * 220.06137 * 21 12 11 39 39 H 1.08001 * 120.75925 * 180.02562 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7246 -0.0461 -2.1434 6 7 3.1746 -0.6587 -3.2228 7 6 2.8779 -1.9228 -3.4781 8 7 3.3699 -2.5275 -4.6308 9 6 4.2075 -1.7632 -5.5585 10 1 4.7087 -0.9214 -5.0808 11 6 5.1458 -2.6390 -6.4055 12 6 4.0045 -2.7318 -7.4319 13 1 3.3256 -3.5662 -7.2557 14 6 4.4709 -2.6489 -8.8625 15 6 4.1977 -3.6818 -9.7393 16 6 4.6249 -3.6061 -11.0521 17 6 5.3305 -2.5001 -11.4866 18 6 5.5997 -1.4636 -10.6106 19 35 6.5582 0.0535 -11.2067 20 6 5.1724 -1.5399 -9.2975 21 6 3.4942 -1.3936 -6.8718 22 6 2.0817 -2.6552 -2.5998 23 9 1.7846 -3.9472 -2.8597 24 6 1.5999 -2.0401 -1.4570 25 1 -0.3933 0.4417 0.7651 26 1 1.7923 -0.5138 0.8900 27 1 3.5345 1.7704 0.0320 28 1 1.5614 2.4679 -1.2085 29 1 2.9844 0.9879 -1.9705 30 1 3.1582 -3.4550 -4.8200 31 1 5.3922 -3.5928 -5.9390 32 1 6.0238 -2.1095 -6.7754 33 1 3.6502 -4.5483 -9.3989 34 1 4.4115 -4.4137 -11.7367 35 1 5.6680 -2.4430 -12.5109 36 1 5.3865 -0.7332 -8.6121 37 1 3.9192 -0.5216 -7.3690 38 1 2.4091 -1.3434 -6.7813 39 1 0.9808 -2.5819 -0.7573 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14189270_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:55:04 Heat of formation + Delta-G solvation = 34.204075 kcal Electronic energy + Delta-G solvation = -25093.043805 eV Core-core repulsion = 21157.178075 eV Total energy + Delta-G solvation = -3935.865730 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.032 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.06445 -41.75264 -41.10520 -39.36961 -37.81080 -35.66756 -33.49498 -33.32469 -32.28002 -31.00580 -30.27666 -26.94245 -26.76289 -26.12519 -24.95505 -23.51700 -22.91674 -22.45170 -20.30017 -19.59759 -18.57077 -18.28186 -18.08058 -17.97655 -17.03413 -16.76735 -16.68721 -16.16191 -16.10706 -15.50583 -15.37191 -15.11077 -14.92421 -14.73191 -14.54907 -14.42723 -14.33424 -14.04285 -13.93156 -13.59968 -13.51836 -12.93961 -12.58076 -12.42001 -12.23239 -12.08565 -11.93152 -11.69807 -11.37636 -11.30946 -11.19910 -10.88853 -10.82668 -10.24497 -9.89473 -9.67081 -8.88842 -4.92159 -0.26570 -0.01658 0.05869 0.22151 0.59227 1.31833 1.68574 1.81017 1.99249 2.36163 2.52727 2.88504 3.05387 3.32483 3.38950 3.56551 3.60034 3.63091 3.73181 3.78951 3.89179 4.00104 4.04044 4.17345 4.23833 4.30000 4.35846 4.39008 4.51717 4.58884 4.65768 4.67941 4.75744 4.87026 4.90011 4.93675 4.94935 5.06455 5.17404 5.29433 5.34969 5.50418 5.78953 5.87031 6.06593 6.81068 6.94578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.064 4.064 3 Si 0.771 3.229 4 C -0.170 4.170 5 C 0.126 3.874 6 N -0.528 5.528 7 C 0.381 3.619 8 N -0.694 5.694 9 C 0.132 3.868 10 H 0.096 0.904 11 C -0.128 4.128 12 C -0.065 4.065 13 H 0.110 0.890 14 C -0.069 4.069 15 C -0.105 4.105 16 C -0.113 4.113 17 C -0.107 4.107 18 C -0.102 4.102 19 Br -0.060 7.060 20 C -0.097 4.097 21 C -0.144 4.144 22 C -0.028 4.028 23 F -0.134 7.134 24 C -0.037 4.037 25 H 0.406 0.594 26 H 0.101 0.899 27 H -0.283 1.283 28 H -0.295 1.295 29 H 0.157 0.843 30 H 0.419 0.581 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.334 -0.979 4.593 4.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.175 4.175 3 Si 0.677 3.323 4 C -0.175 4.175 5 C -0.030 4.030 6 N -0.245 5.245 7 C 0.143 3.857 8 N -0.326 5.326 9 C 0.026 3.974 10 H 0.114 0.886 11 C -0.166 4.166 12 C -0.083 4.083 13 H 0.128 0.872 14 C -0.070 4.070 15 C -0.123 4.123 16 C -0.132 4.132 17 C -0.127 4.127 18 C -0.181 4.181 19 Br 0.026 6.974 20 C -0.117 4.117 21 C -0.182 4.182 22 C -0.054 4.054 23 F -0.113 7.113 24 C -0.063 4.063 25 H 0.257 0.743 26 H 0.119 0.881 27 H -0.210 1.210 28 H -0.223 1.223 29 H 0.173 0.827 30 H 0.257 0.743 31 H 0.103 0.897 32 H 0.120 0.880 33 H 0.165 0.835 34 H 0.170 0.830 35 H 0.157 0.843 36 H 0.154 0.846 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.230 0.378 2.687 2.723 hybrid contribution -0.736 -1.707 0.038 1.860 sum -0.506 -1.329 2.725 3.074 Atomic orbital electron populations 1.86436 1.17095 1.82452 1.51563 1.24596 0.85972 1.10725 0.96178 0.94170 0.77622 0.75362 0.85168 1.20278 1.03096 0.94582 0.99515 1.22345 0.93375 0.98954 0.88359 1.67246 1.27073 1.08129 1.22029 1.18525 0.90469 0.89007 0.87720 1.44224 1.54179 1.14505 1.19742 1.21839 0.91657 0.95324 0.88585 0.88565 1.23403 0.96934 1.01095 0.95126 1.21591 0.98194 0.99150 0.89396 0.87153 1.19830 0.97427 0.93748 0.95955 1.21528 0.98749 0.98805 0.93251 1.21483 0.97065 0.98003 0.96637 1.21364 0.98444 0.92927 0.99944 1.21938 1.04149 0.95038 0.96995 1.96758 1.73534 1.37445 1.89697 1.21066 0.97787 0.98963 0.93847 1.23608 1.00882 0.97577 0.96180 1.18086 1.07156 0.80968 0.99226 1.91481 1.92245 1.33519 1.94034 1.21489 0.95650 0.94357 0.94775 0.74284 0.88088 1.20968 1.22260 0.82671 0.74253 0.89684 0.88031 0.83488 0.82998 0.84328 0.84629 0.88646 0.91759 0.81596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 1.42 12.75 -148.98 -1.90 -0.48 16 2 C -0.06 0.18 2.83 71.24 0.20 0.38 16 3 Si 0.77 -3.09 29.82 68.60 2.05 -1.04 16 4 C -0.17 -0.62 5.43 -19.77 -0.11 -0.72 16 5 C 0.13 0.80 9.84 84.61 0.83 1.63 16 6 N -0.53 -4.34 9.13 -193.02 -1.76 -6.10 16 7 C 0.38 2.38 7.49 133.08 1.00 3.38 16 8 N -0.69 -1.19 5.42 -321.50 -1.74 -2.93 16 9 C 0.13 0.03 4.36 45.58 0.20 0.23 16 10 H 0.10 0.30 7.40 -2.39 -0.02 0.28 16 11 C -0.13 0.39 7.29 31.12 0.23 0.62 16 12 C -0.07 0.19 3.85 -11.02 -0.04 0.14 16 13 H 0.11 -0.53 8.09 -2.39 -0.02 -0.55 16 14 C -0.07 0.03 5.29 -19.87 -0.11 -0.08 16 15 C -0.11 0.16 9.71 22.27 0.22 0.38 16 16 C -0.11 0.13 10.05 22.27 0.22 0.36 16 17 C -0.11 -0.15 9.79 22.29 0.22 0.06 16 18 C -0.10 -0.34 6.22 22.31 0.14 -0.20 16 19 Br -0.06 -0.25 33.70 -20.37 -0.69 -0.93 16 20 C -0.10 -0.16 8.28 22.29 0.18 0.02 16 21 C -0.14 0.05 7.27 31.18 0.23 0.28 16 22 C -0.03 -0.16 7.35 22.58 0.17 0.01 16 23 F -0.13 -0.73 16.65 44.97 0.75 0.02 16 24 C -0.04 -0.14 9.75 22.48 0.22 0.08 16 25 H 0.41 -5.29 8.74 -74.06 -0.65 -5.93 16 26 H 0.10 -0.76 7.96 -2.39 -0.02 -0.77 16 27 H -0.28 -0.32 7.11 99.48 0.71 0.39 16 28 H -0.29 -1.14 7.11 99.48 0.71 -0.44 16 29 H 0.16 0.70 4.88 -2.91 -0.01 0.69 16 30 H 0.42 -0.54 8.17 -92.71 -0.76 -1.30 16 31 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 32 H 0.10 -0.32 7.64 -2.39 -0.02 -0.34 16 33 H 0.15 -0.85 8.05 -2.91 -0.02 -0.87 16 34 H 0.15 -0.86 8.06 -2.91 -0.02 -0.88 16 35 H 0.14 -0.09 8.06 -2.91 -0.02 -0.11 16 36 H 0.14 0.04 6.73 -2.91 -0.02 0.02 16 37 H 0.10 -0.04 6.40 -2.39 -0.02 -0.06 16 38 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.17 0.02 8.06 -2.91 -0.02 0.00 16 Total: 0.00 -15.25 350.99 0.25 -15.00 By element: Atomic # 1 Polarization: -9.87 SS G_CDS: -0.25 Total: -10.12 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 3.79 Total: 6.58 kcal Atomic # 7 Polarization: -5.53 SS G_CDS: -3.50 Total: -9.03 kcal Atomic # 8 Polarization: 1.42 SS G_CDS: -1.90 Total: -0.48 kcal Atomic # 9 Polarization: -0.73 SS G_CDS: 0.75 Total: 0.02 kcal Atomic # 14 Polarization: -3.09 SS G_CDS: 2.05 Total: -1.04 kcal Atomic # 35 Polarization: -0.25 SS G_CDS: -0.69 Total: -0.93 kcal Total: -15.25 0.25 -15.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14189270_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.201 kcal (2) G-P(sol) polarization free energy of solvation -15.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds