Wall clock time and date at job start Mon Mar 8 2021 05:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42891 * 1 3 3 Si 1.86299 * 109.47421 * 2 1 4 4 C 1.50704 * 109.47386 * 120.00373 * 2 1 3 5 5 C 1.38602 * 120.71938 * 64.99560 * 4 2 1 6 6 N 1.32279 * 119.19348 * 179.97438 * 5 4 2 7 7 C 1.32488 * 120.74408 * 359.97438 * 6 5 4 8 8 N 1.38407 * 119.21852 * 180.02562 * 7 6 5 9 9 C 1.46502 * 120.00004 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47175 * 180.02562 * 9 8 7 11 11 C 1.52990 * 109.47110 * 179.97438 * 10 9 8 12 12 H 1.09000 * 112.90908 * 43.75454 * 11 10 9 13 13 C 1.53786 * 113.61464 * 175.00082 * 11 10 9 14 14 C 1.53781 * 87.17350 * 140.02626 * 13 11 10 15 15 H 1.08998 * 113.61196 * 219.97759 * 14 13 11 16 16 F 1.39903 * 113.61367 * 89.07581 * 14 13 11 17 17 C 1.53781 * 87.08070 * 334.52830 * 14 13 11 18 18 N 1.32501 * 121.56531 * 0.27807 * 7 6 5 19 19 C 1.32277 * 120.73547 * 359.44258 * 18 7 6 20 20 H 0.96702 * 114.00132 * 299.99708 * 1 2 3 21 21 H 1.09004 * 109.47367 * 240.00125 * 2 1 3 22 22 H 1.48502 * 110.00104 * 178.67619 * 3 2 1 23 23 H 1.48495 * 110.00012 * 300.00315 * 3 2 1 24 24 H 1.07993 * 120.40336 * 0.02562 * 5 4 2 25 25 H 0.97003 * 120.00022 * 0.02562 * 8 7 6 26 26 H 1.09002 * 109.47067 * 60.00301 * 9 8 7 27 27 H 1.09003 * 109.47399 * 300.00438 * 9 8 7 28 28 H 1.09007 * 109.46551 * 60.00395 * 10 9 8 29 29 H 1.08994 * 109.47111 * 300.00667 * 10 9 8 30 30 H 1.09002 * 113.61357 * 25.43543 * 13 11 10 31 31 H 1.09002 * 113.61608 * 254.61705 * 13 11 10 32 32 H 1.09005 * 113.61471 * 139.98321 * 17 14 13 33 33 H 1.09003 * 113.61469 * 270.88099 * 17 14 13 34 34 H 1.08003 * 120.39642 * 180.29392 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.6925 -2.0634 1.4139 6 7 2.1478 -2.6568 2.5049 7 6 2.8251 -1.9729 3.4154 8 7 3.2874 -2.6257 4.5449 9 6 4.0387 -1.8862 5.5623 10 6 4.4301 -2.8348 6.6972 11 6 5.2152 -2.0628 7.7593 12 1 4.7750 -1.0928 7.9908 13 6 5.5527 -2.8990 9.0050 14 6 6.9291 -2.2132 8.9989 15 1 7.7525 -2.8847 9.2421 16 9 6.9645 -1.0210 9.7300 17 6 6.7305 -2.0039 7.4884 18 7 3.0661 -0.6779 3.2727 19 6 2.6435 -0.0255 2.2024 20 1 -0.3933 0.4417 0.7651 21 1 1.7923 -0.5138 -0.8900 22 1 3.5346 1.7702 0.0322 23 1 1.5615 2.4679 -1.2084 24 1 1.1422 -2.6264 0.6748 25 1 3.1147 -3.5729 4.6626 26 1 3.4190 -1.0816 5.9583 27 1 4.9388 -1.4649 5.1147 28 1 5.0500 -3.6391 6.3008 29 1 3.5302 -3.2565 7.1448 30 1 5.5980 -3.9709 8.8123 31 1 4.9451 -2.6508 9.8753 32 1 7.0733 -1.0319 7.1335 33 1 7.0979 -2.8310 6.8809 34 1 2.8471 1.0291 2.0894 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14412252_12175864.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:44:04 Heat of formation + Delta-G solvation = 1.776575 kcal Electronic energy + Delta-G solvation = -18017.344412 eV Core-core repulsion = 14867.369174 eV Total energy + Delta-G solvation = -3149.975239 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 254.117 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.66032 -42.09757 -39.52730 -38.16665 -36.87913 -34.76170 -33.26128 -31.07153 -27.06277 -26.75472 -26.03029 -25.10047 -23.13639 -22.72522 -20.50810 -19.40259 -18.70327 -18.01897 -17.21752 -16.82839 -16.69016 -16.29665 -16.09171 -16.01744 -15.72267 -15.49464 -15.31834 -14.63387 -14.56621 -14.09508 -13.77928 -13.51778 -13.15872 -13.11581 -12.61870 -12.26642 -11.95147 -11.92302 -11.86309 -11.77661 -11.33585 -11.14276 -11.00441 -10.55098 -10.06229 -9.12043 -4.99467 0.03445 0.11952 1.32110 1.64396 1.82291 1.98821 2.78017 3.13509 3.29768 3.35614 3.54319 3.61655 3.63409 3.68942 3.73606 3.82151 3.89678 4.12909 4.23106 4.28667 4.46796 4.56238 4.60531 4.73078 4.73834 4.76693 4.83748 4.93129 5.03686 5.10225 5.18067 5.26704 5.50624 5.73459 6.02320 6.38703 6.78523 7.25401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.046 4.046 3 Si 0.767 3.233 4 C -0.288 4.288 5 C 0.212 3.788 6 N -0.590 5.590 7 C 0.549 3.451 8 N -0.693 5.693 9 C 0.141 3.859 10 C -0.110 4.110 11 C -0.104 4.104 12 H 0.088 0.912 13 C -0.151 4.151 14 C 0.045 3.955 15 H 0.111 0.889 16 F -0.220 7.220 17 C -0.156 4.156 18 N -0.579 5.579 19 C 0.195 3.805 20 H 0.395 0.605 21 H 0.114 0.886 22 H -0.285 1.285 23 H -0.295 1.295 24 H 0.183 0.817 25 H 0.419 0.581 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.150 -0.796 1.488 1.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.158 4.158 3 Si 0.673 3.327 4 C -0.297 4.297 5 C 0.044 3.956 6 N -0.313 5.313 7 C 0.192 3.808 8 N -0.330 5.330 9 C 0.018 3.982 10 C -0.148 4.148 11 C -0.123 4.123 12 H 0.106 0.894 13 C -0.188 4.188 14 C 0.009 3.991 15 H 0.129 0.871 16 F -0.201 7.201 17 C -0.193 4.193 18 N -0.302 5.302 19 C 0.028 3.972 20 H 0.245 0.755 21 H 0.131 0.869 22 H -0.212 1.212 23 H -0.223 1.223 24 H 0.199 0.801 25 H 0.258 0.742 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.137 0.863 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.134 0.866 34 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 0.870 -0.873 1.570 1.996 hybrid contribution -0.224 -0.334 -0.881 0.969 sum 0.646 -1.207 0.688 1.533 Atomic orbital electron populations 1.86477 1.17188 1.82080 1.50444 1.24795 0.85131 1.10088 0.95798 0.93963 0.77890 0.75272 0.85615 1.21774 1.08612 0.97470 1.01810 1.23155 0.89194 0.91728 0.91484 1.68002 1.17431 1.40628 1.05228 1.19692 0.87601 0.85924 0.87602 1.44280 1.58382 1.12485 1.17842 1.21331 0.95050 0.94607 0.87250 1.21683 1.01210 0.97864 0.94015 1.22485 0.94992 0.99584 0.95260 0.89406 1.23619 0.95081 1.01506 0.98630 1.22696 1.01003 0.83016 0.92375 0.87132 1.92778 1.97768 1.50157 1.79396 1.23753 0.96433 1.04254 0.94901 1.67973 1.27775 1.08389 1.26106 1.23189 0.87663 1.00199 0.86170 0.75543 0.86861 1.21166 1.22254 0.80053 0.74240 0.92164 0.92126 0.89688 0.90093 0.86306 0.90685 0.90981 0.86610 0.79464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.11 12.85 -148.98 -1.91 -0.80 16 2 C -0.05 0.13 2.83 71.24 0.20 0.33 16 3 Si 0.77 -3.06 29.88 68.60 2.05 -1.01 16 4 C -0.29 0.06 5.36 -19.69 -0.11 -0.05 16 5 C 0.21 0.53 10.99 84.71 0.93 1.46 16 6 N -0.59 -3.66 10.46 -197.99 -2.07 -5.73 16 7 C 0.55 3.16 8.43 261.49 2.20 5.36 16 8 N -0.69 -0.66 5.70 -351.03 -2.00 -2.66 16 9 C 0.14 -0.26 5.64 86.38 0.49 0.23 16 10 C -0.11 0.70 5.17 30.59 0.16 0.86 16 11 C -0.10 0.47 3.64 -10.18 -0.04 0.43 16 12 H 0.09 -0.18 8.13 -2.39 -0.02 -0.20 16 13 C -0.15 0.75 7.53 31.12 0.23 0.98 16 14 C 0.05 -0.09 5.69 31.12 0.18 0.09 16 15 H 0.11 -0.59 8.14 -2.39 -0.02 -0.61 16 16 F -0.22 -1.24 17.38 44.97 0.78 -0.46 16 17 C -0.16 0.66 7.54 31.21 0.24 0.90 16 18 N -0.58 -2.99 9.59 -197.98 -1.90 -4.88 16 19 C 0.19 0.11 9.92 84.71 0.84 0.95 16 20 H 0.39 -3.74 8.70 -74.06 -0.64 -4.39 16 21 H 0.11 -0.27 7.96 -2.39 -0.02 -0.28 16 22 H -0.28 -0.29 7.11 99.48 0.71 0.41 16 23 H -0.29 -1.06 7.11 99.48 0.71 -0.35 16 24 H 0.18 -0.23 8.06 -2.91 -0.02 -0.25 16 25 H 0.42 -0.75 8.59 -92.71 -0.80 -1.55 16 26 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 27 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 28 H 0.08 -0.69 7.85 -2.38 -0.02 -0.71 16 29 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 30 H 0.12 -1.03 8.10 -2.39 -0.02 -1.05 16 31 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 32 H 0.07 -0.14 8.14 -2.38 -0.02 -0.16 16 33 H 0.12 -0.87 7.90 -2.39 -0.02 -0.89 16 34 H 0.19 -1.01 5.07 -2.91 -0.01 -1.02 16 Total: 0.00 -15.94 292.02 0.00 -15.95 By element: Atomic # 1 Polarization: -11.64 SS G_CDS: -0.28 Total: -11.92 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 5.33 Total: 11.53 kcal Atomic # 7 Polarization: -7.31 SS G_CDS: -5.97 Total: -13.28 kcal Atomic # 8 Polarization: 1.11 SS G_CDS: -1.91 Total: -0.80 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.78 Total: -0.46 kcal Atomic # 14 Polarization: -3.06 SS G_CDS: 2.05 Total: -1.01 kcal Total: -15.94 0.00 -15.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14412252_12175864.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.724 kcal (2) G-P(sol) polarization free energy of solvation -15.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds