Wall clock time and date at job start Mon Mar 8 2021 05:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.38836 * 120.33483 * 65.00185 * 4 2 1 6 6 C 1.38340 * 118.50131 * 179.97438 * 5 4 2 7 7 C 1.39097 * 119.10152 * 0.02562 * 6 5 4 8 8 N 1.39010 * 119.70699 * 180.02562 * 7 6 5 9 9 C 1.46502 * 119.99845 * 359.97438 * 8 7 6 10 10 C 1.53003 * 109.47153 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47091 * 179.97438 * 10 9 8 12 12 H 1.08999 * 112.85087 * 43.80064 * 11 10 9 13 13 C 1.53780 * 113.61255 * 174.99739 * 11 10 9 14 14 C 1.53781 * 87.07975 * 139.98106 * 13 11 10 15 15 H 1.09003 * 113.61637 * 220.01721 * 14 13 11 16 16 F 1.39899 * 113.61639 * 89.20002 * 14 13 11 17 17 C 1.53781 * 113.61432 * 272.49750 * 11 10 9 18 18 N 1.32419 * 120.58910 * 359.97438 * 7 6 5 19 19 C 1.31950 * 121.62134 * 359.70672 * 18 7 6 20 20 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 21 21 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 22 22 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 23 23 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 24 24 H 1.07996 * 120.75076 * 0.02562 * 5 4 2 25 25 H 1.08006 * 120.44808 * 180.02562 * 6 5 4 26 26 H 0.96997 * 120.00028 * 180.02562 * 8 7 6 27 27 H 1.08999 * 109.47017 * 300.00033 * 9 8 7 28 28 H 1.08996 * 109.47184 * 60.00052 * 9 8 7 29 29 H 1.09000 * 109.46650 * 300.00192 * 10 9 8 30 30 H 1.08997 * 109.46771 * 59.99511 * 10 9 8 31 31 H 1.08997 * 113.61321 * 254.52829 * 13 11 10 32 32 H 1.08999 * 113.61645 * 25.43417 * 13 11 10 33 33 H 1.09000 * 113.61212 * 334.56597 * 17 11 10 34 34 H 1.08994 * 113.61280 * 105.47079 * 17 11 10 35 35 H 1.07998 * 119.56906 * 180.28863 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 1.6874 -2.0659 1.4063 6 6 2.1663 -2.6799 2.5498 7 6 2.8712 -1.9228 3.4796 8 7 3.3585 -2.5271 4.6328 9 6 3.1282 -3.9552 4.8647 10 6 3.7623 -4.3645 6.1956 11 6 3.5212 -5.8558 6.4381 12 1 3.6894 -6.4620 5.5480 13 6 4.2243 -6.3972 7.6940 14 6 2.9533 -7.2230 7.9537 15 1 2.6665 -7.2643 9.0045 16 9 2.9692 -8.4825 7.3450 17 6 2.1911 -6.1572 7.1486 18 7 3.0832 -0.6317 3.2757 19 6 2.6437 -0.0212 2.1916 20 1 -0.3934 0.4418 0.7650 21 1 1.7924 -0.5139 -0.8899 22 1 1.5616 2.4678 -1.2086 23 1 1.5878 2.4586 1.2241 24 1 1.1371 -2.6284 0.6667 25 1 1.9950 -3.7329 2.7182 26 1 3.8504 -2.0031 5.2842 27 1 2.0562 -4.1495 4.8983 28 1 3.5768 -4.5316 4.0556 29 1 4.8343 -4.1700 6.1623 30 1 3.3134 -3.7880 7.0044 31 1 5.1025 -7.0046 7.4752 32 1 4.4128 -5.6361 8.4512 33 1 1.8238 -5.3306 7.7566 34 1 1.4280 -6.5709 6.4894 35 1 2.8394 1.0323 2.0568 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14412252_13915762.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:44:06 Heat of formation + Delta-G solvation = -15.110625 kcal Electronic energy + Delta-G solvation = -17877.237743 eV Core-core repulsion = 14791.956131 eV Total energy + Delta-G solvation = -3085.281612 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.67186 -41.39284 -39.53281 -38.19700 -36.77588 -33.58227 -32.61651 -30.57884 -26.95428 -26.70069 -25.26876 -24.77451 -22.88835 -22.26070 -20.49308 -18.72938 -18.56979 -17.58091 -17.19421 -16.73763 -16.48572 -16.40916 -16.19793 -15.84220 -15.52005 -15.47997 -15.03604 -14.46641 -14.37922 -14.02687 -13.78729 -13.52081 -13.31367 -13.10127 -12.60776 -12.44977 -12.03968 -11.92350 -11.83610 -11.24378 -11.10576 -11.01028 -10.76278 -10.54406 -10.41127 -8.70841 -4.90614 0.22323 0.39396 1.34031 1.60592 1.96519 2.11880 2.82136 3.28367 3.34675 3.46029 3.60042 3.61990 3.71077 3.78509 3.86211 4.01898 4.06963 4.12957 4.24259 4.36188 4.46976 4.58509 4.60821 4.70620 4.73314 4.76970 4.82701 4.91987 5.00095 5.02898 5.13077 5.18607 5.29779 5.50100 5.53043 6.01491 6.50299 6.54701 7.14074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.064 4.064 3 Si 0.758 3.242 4 C -0.234 4.234 5 C -0.012 4.012 6 C -0.244 4.244 7 C 0.392 3.608 8 N -0.721 5.721 9 C 0.128 3.872 10 C -0.110 4.110 11 C -0.104 4.104 12 H 0.090 0.910 13 C -0.153 4.153 14 C 0.044 3.956 15 H 0.109 0.891 16 F -0.220 7.220 17 C -0.155 4.155 18 N -0.565 5.565 19 C 0.145 3.855 20 H 0.384 0.616 21 H 0.125 0.875 22 H -0.300 1.300 23 H -0.283 1.283 24 H 0.146 0.854 25 H 0.146 0.854 26 H 0.407 0.593 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.041 -0.491 2.489 3.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.174 4.174 3 Si 0.664 3.336 4 C -0.240 4.240 5 C -0.037 4.037 6 C -0.268 4.268 7 C 0.156 3.844 8 N -0.354 5.354 9 C 0.004 3.996 10 C -0.147 4.147 11 C -0.123 4.123 12 H 0.108 0.892 13 C -0.190 4.190 14 C 0.008 3.992 15 H 0.127 0.873 16 F -0.201 7.201 17 C -0.192 4.192 18 N -0.283 5.283 19 C -0.012 4.012 20 H 0.234 0.766 21 H 0.143 0.857 22 H -0.228 1.228 23 H -0.209 1.209 24 H 0.163 0.837 25 H 0.164 0.836 26 H 0.243 0.757 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.093 0.907 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.348 0.220 2.594 3.505 hybrid contribution -1.411 -0.600 0.057 1.534 sum 0.937 -0.380 2.650 2.836 Atomic orbital electron populations 1.86564 1.18756 1.80309 1.50112 1.24918 0.83122 1.11237 0.98085 0.94172 0.90476 0.72494 0.76493 1.20956 1.06839 0.96082 1.00092 1.21412 0.93058 0.93627 0.95632 1.21639 1.06438 1.02074 0.96689 1.18666 0.89646 0.88449 0.87613 1.44630 1.60296 1.10036 1.20402 1.21502 1.00837 0.79045 0.98224 1.21646 1.01890 0.94973 0.96228 1.22454 0.96097 0.95863 0.97864 0.89157 1.23626 0.96678 0.99789 0.98947 1.22706 1.00125 0.78469 0.97912 0.87305 1.92778 1.97375 1.44135 1.85810 1.23702 0.97244 0.98800 0.99491 1.67168 1.27009 1.09787 1.24333 1.22507 0.91491 0.99668 0.87550 0.76649 0.85706 1.22820 1.20942 0.83663 0.83592 0.75669 0.91545 0.91666 0.90361 0.89925 0.90746 0.86473 0.86641 0.90721 0.81675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.48 12.84 -148.98 -1.91 -3.39 16 2 C -0.06 0.02 2.82 71.24 0.20 0.22 16 3 Si 0.76 -1.05 29.90 68.60 2.05 1.00 16 4 C -0.23 -0.32 5.36 -19.76 -0.11 -0.43 16 5 C -0.01 -0.02 9.83 22.44 0.22 0.20 16 6 C -0.24 -0.37 9.33 22.50 0.21 -0.16 16 7 C 0.39 1.43 7.65 133.05 1.02 2.44 16 8 N -0.72 0.76 5.73 -345.08 -1.98 -1.22 16 9 C 0.13 -0.67 4.88 86.38 0.42 -0.25 16 10 C -0.11 0.86 5.17 30.59 0.16 1.02 16 11 C -0.10 0.63 3.63 -10.27 -0.04 0.59 16 12 H 0.09 -0.38 8.13 -2.39 -0.02 -0.40 16 13 C -0.15 0.86 7.54 31.12 0.23 1.10 16 14 C 0.04 -0.12 5.69 31.12 0.18 0.05 16 15 H 0.11 -0.63 8.14 -2.39 -0.02 -0.65 16 16 F -0.22 -1.06 17.39 44.97 0.78 -0.28 16 17 C -0.15 0.88 7.53 31.12 0.23 1.12 16 18 N -0.57 -3.42 10.39 -193.26 -2.01 -5.43 16 19 C 0.15 0.42 9.84 84.63 0.83 1.25 16 20 H 0.38 -0.93 8.70 -74.06 -0.64 -1.57 16 21 H 0.13 -0.28 7.96 -2.39 -0.02 -0.30 16 22 H -0.30 -1.82 7.11 99.48 0.71 -1.11 16 23 H -0.28 -0.71 7.02 99.48 0.70 -0.01 16 24 H 0.15 -0.18 8.06 -2.91 -0.02 -0.20 16 25 H 0.15 -0.31 6.71 -2.91 -0.02 -0.33 16 26 H 0.41 -0.87 8.60 -92.71 -0.80 -1.67 16 27 H 0.07 -0.35 7.93 -2.39 -0.02 -0.37 16 28 H 0.07 -0.33 7.93 -2.39 -0.02 -0.35 16 29 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 30 H 0.08 -0.74 7.84 -2.39 -0.02 -0.76 16 31 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 32 H 0.12 -1.05 8.10 -2.39 -0.02 -1.07 16 33 H 0.12 -1.01 7.89 -2.39 -0.02 -1.03 16 34 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 35 H 0.17 -0.14 4.85 -2.91 -0.01 -0.15 16 Total: 0.00 -13.56 294.89 0.19 -13.37 By element: Atomic # 1 Polarization: -10.90 SS G_CDS: -0.30 Total: -11.21 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 3.56 Total: 7.16 kcal Atomic # 7 Polarization: -2.66 SS G_CDS: -3.99 Total: -6.65 kcal Atomic # 8 Polarization: -1.48 SS G_CDS: -1.91 Total: -3.39 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.78 Total: -0.28 kcal Atomic # 14 Polarization: -1.05 SS G_CDS: 2.05 Total: 1.00 kcal Total: -13.56 0.19 -13.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14412252_13915762.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.740 kcal (2) G-P(sol) polarization free energy of solvation -13.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds