Wall clock time and date at job start Mon Mar 8 2021 05:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33327 * 125.95124 * 2 1 4 4 C 1.50700 * 122.71312 * 359.97438 * 3 2 1 5 5 O 1.42898 * 109.47297 * 113.53699 * 4 3 2 6 6 Si 1.86299 * 109.47276 * 233.54062 * 4 3 2 7 7 N 1.32122 * 114.58067 * 180.24387 * 3 2 1 8 8 C 1.29693 * 116.86463 * 359.48762 * 7 3 2 9 9 N 1.38607 * 124.95213 * 180.22692 * 8 7 3 10 10 C 1.46497 * 120.00002 * 180.27707 * 9 8 7 11 11 C 1.53007 * 109.46838 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.46820 * 180.02562 * 11 10 9 13 13 H 1.08995 * 112.85229 * 316.19394 * 12 11 10 14 14 C 1.53790 * 113.61555 * 87.49973 * 12 11 10 15 15 C 1.53788 * 87.07849 * 139.97771 * 14 12 11 16 16 H 1.08996 * 113.61227 * 220.01799 * 15 14 12 17 17 F 1.39899 * 113.61139 * 89.12018 * 15 14 12 18 18 C 1.53775 * 87.08342 * 334.56740 * 15 14 12 19 19 S 1.70967 * 110.09738 * 0.48774 * 8 7 3 20 20 H 1.09004 * 109.46809 * 84.87305 * 1 2 3 21 21 H 1.09000 * 109.47346 * 204.86932 * 1 2 3 22 22 H 1.08997 * 109.47429 * 324.87473 * 1 2 3 23 23 H 1.08998 * 109.46586 * 353.53752 * 4 3 2 24 24 H 0.96698 * 113.99975 * 59.99980 * 5 4 3 25 25 H 1.48499 * 109.99967 * 58.67442 * 6 4 3 26 26 H 1.48494 * 110.00080 * 179.97438 * 6 4 3 27 27 H 0.97002 * 119.99544 * 0.27562 * 9 8 7 28 28 H 1.09000 * 109.47251 * 299.99479 * 10 9 8 29 29 H 1.09000 * 109.47391 * 60.00274 * 10 9 8 30 30 H 1.09000 * 109.46653 * 299.99697 * 11 10 9 31 31 H 1.08987 * 109.47253 * 59.99712 * 11 10 9 32 32 H 1.08998 * 113.61052 * 254.52778 * 14 12 11 33 33 H 1.08997 * 113.61394 * 25.43185 * 14 12 11 34 34 H 1.08995 * 113.61581 * 270.88424 * 18 15 14 35 35 H 1.09004 * 113.69163 * 139.99047 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7414 2.4830 -0.0006 5 8 2.0688 3.1228 1.2345 6 14 2.4882 3.4409 -1.4132 7 7 3.5850 0.8188 -0.0051 8 6 3.9315 -0.4310 0.0009 9 7 5.2384 -0.8926 0.0015 10 6 5.5065 -2.3329 0.0025 11 6 7.0180 -2.5702 0.0036 12 6 7.2980 -4.0744 0.0040 13 1 6.6623 -4.6231 0.6989 14 6 7.3513 -4.6915 -1.4036 15 6 8.5358 -5.5351 -0.9033 16 1 9.3355 -5.6428 -1.6360 17 9 8.1539 -6.7533 -0.3310 18 6 8.7907 -4.4231 0.1278 19 16 2.5413 -1.4260 0.0007 20 1 -0.3633 0.0918 -1.0236 21 1 -0.3634 -0.9324 0.4322 22 1 -0.3634 0.8405 0.5913 23 1 0.6581 2.4498 -0.1166 24 1 3.0186 3.1875 1.4043 25 1 2.1818 2.7681 -2.7011 26 1 1.9551 4.8268 -1.4251 27 1 5.9755 -0.2620 0.0012 28 1 5.0677 -2.7835 0.8927 29 1 5.0681 -2.7847 -0.8873 30 1 7.4572 -2.1195 -0.8864 31 1 7.4561 -2.1185 0.8935 32 1 6.4702 -5.2818 -1.6552 33 1 7.6212 -3.9788 -2.1829 34 1 9.4540 -3.6371 -0.2327 35 1 9.0718 -4.7954 1.1130 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14412252_15704122.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:44:10 Heat of formation + Delta-G solvation = -12.482529 kcal Electronic energy + Delta-G solvation = -18402.872003 eV Core-core repulsion = 15251.318981 eV Total energy + Delta-G solvation = -3151.553021 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 273.094 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.65787 -41.04718 -39.56419 -37.89398 -36.83276 -33.63514 -31.50322 -28.95501 -26.83562 -26.18731 -25.44654 -24.14721 -23.00359 -20.63441 -20.36034 -19.11527 -17.95559 -17.62242 -17.05687 -16.81276 -16.62161 -16.38728 -15.84023 -15.82191 -15.47367 -15.30374 -14.77184 -14.25387 -14.10256 -13.99806 -13.78245 -13.63327 -13.44405 -13.13626 -12.92347 -12.61694 -12.45816 -11.95330 -11.92286 -11.79178 -11.20320 -11.07122 -10.98324 -10.70102 -10.48194 -10.03708 -8.65812 -4.93496 -0.05856 0.14157 0.70974 1.24993 1.61692 1.79775 1.93789 1.96297 3.29372 3.35275 3.39765 3.60793 3.63913 3.73610 3.85509 3.98630 4.09126 4.15805 4.18869 4.39743 4.42239 4.57054 4.63791 4.65626 4.75124 4.83081 4.86426 4.89563 4.93483 5.03519 5.11317 5.16508 5.20552 5.51102 5.60755 6.36038 6.63342 6.88870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.269 4.269 3 C 0.061 3.939 4 C -0.038 4.038 5 O -0.549 6.549 6 Si 0.779 3.221 7 N -0.556 5.556 8 C 0.310 3.690 9 N -0.684 5.684 10 C 0.119 3.881 11 C -0.106 4.106 12 C -0.106 4.106 13 H 0.088 0.912 14 C -0.156 4.156 15 C 0.043 3.957 16 H 0.110 0.890 17 F -0.221 7.221 18 C -0.151 4.151 19 S 0.113 5.887 20 H 0.079 0.921 21 H 0.076 0.924 22 H 0.080 0.920 23 H 0.122 0.878 24 H 0.393 0.607 25 H -0.297 1.297 26 H -0.280 1.280 27 H 0.419 0.581 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.215 -1.257 -1.221 4.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.392 4.392 3 C -0.069 4.069 4 C -0.150 4.150 5 O -0.356 6.356 6 Si 0.683 3.317 7 N -0.283 5.283 8 C -0.062 4.062 9 N -0.325 5.325 10 C -0.004 4.004 11 C -0.144 4.144 12 C -0.125 4.125 13 H 0.107 0.893 14 C -0.193 4.193 15 C 0.007 3.993 16 H 0.127 0.873 17 F -0.202 7.202 18 C -0.189 4.189 19 S 0.362 5.638 20 H 0.098 0.902 21 H 0.095 0.905 22 H 0.099 0.901 23 H 0.139 0.861 24 H 0.243 0.757 25 H -0.224 1.224 26 H -0.207 1.207 27 H 0.259 0.741 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.730 -1.720 -1.892 4.522 hybrid contribution -0.544 0.312 0.341 0.714 sum 3.186 -1.408 -1.551 3.813 Atomic orbital electron populations 1.20245 0.85986 1.03759 1.03220 1.25416 1.02151 0.93655 1.17999 1.20224 0.87316 0.97491 1.01908 1.24839 1.03290 0.89754 0.97151 1.86433 1.31133 1.79550 1.38477 0.92950 0.90410 0.75592 0.72715 1.65978 1.16943 1.17067 1.28356 1.23544 0.92815 0.91538 0.98260 1.44057 1.00996 1.08065 1.79421 1.21680 0.98474 0.78101 1.02176 1.21626 0.92779 0.95444 1.04553 1.22463 0.97030 0.95466 0.97492 0.89325 1.23724 0.98156 0.99401 0.98040 1.22720 0.99641 0.79709 0.97240 0.87256 1.92778 1.92951 1.47647 1.86811 1.23620 0.97311 0.98143 0.99807 1.83864 0.96314 1.09761 1.73909 0.90214 0.90508 0.90092 0.86101 0.75731 1.22384 1.20696 0.74123 0.91617 0.91196 0.89183 0.89806 0.90847 0.86369 0.86220 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.04 9.71 71.23 0.69 0.65 16 2 C -0.27 -1.29 6.57 24.57 0.16 -1.13 16 3 C 0.06 0.35 5.20 41.40 0.22 0.56 16 4 C -0.04 -0.15 2.84 71.24 0.20 0.05 16 5 O -0.55 -2.64 12.88 -148.98 -1.92 -4.56 16 6 Si 0.78 2.28 32.61 68.60 2.24 4.51 16 7 N -0.56 -2.81 9.76 -189.86 -1.85 -4.67 16 8 C 0.31 0.83 8.24 179.32 1.48 2.31 16 9 N -0.68 2.23 5.71 -351.00 -2.01 0.22 16 10 C 0.12 -0.78 5.52 86.38 0.48 -0.30 16 11 C -0.11 1.05 5.17 30.60 0.16 1.20 16 12 C -0.11 0.76 3.63 -10.26 -0.04 0.73 16 13 H 0.09 -0.44 8.13 -2.39 -0.02 -0.46 16 14 C -0.16 1.05 7.53 31.13 0.23 1.28 16 15 C 0.04 -0.16 5.69 31.12 0.18 0.02 16 16 H 0.11 -0.73 8.14 -2.39 -0.02 -0.75 16 17 F -0.22 -0.95 17.38 44.97 0.78 -0.17 16 18 C -0.15 1.04 7.54 31.12 0.23 1.27 16 19 S 0.11 0.26 22.32 -56.49 -1.26 -1.00 16 20 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 21 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 22 H 0.08 0.01 7.17 -2.39 -0.02 -0.01 16 23 H 0.12 0.33 6.33 -2.39 -0.02 0.32 16 24 H 0.39 -0.36 8.70 -74.06 -0.64 -1.00 16 25 H -0.30 -2.60 7.11 99.48 0.71 -1.90 16 26 H -0.28 -2.07 7.11 99.48 0.71 -1.36 16 27 H 0.42 -2.44 8.60 -92.71 -0.80 -3.24 16 28 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 29 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 30 H 0.09 -1.05 7.84 -2.39 -0.02 -1.07 16 31 H 0.08 -0.85 8.14 -2.39 -0.02 -0.87 16 32 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 33 H 0.12 -1.21 7.89 -2.39 -0.02 -1.22 16 34 H 0.12 -1.27 8.10 -2.39 -0.02 -1.29 16 35 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 Total: 0.00 -13.31 310.40 -0.32 -13.63 By element: Atomic # 1 Polarization: -14.34 SS G_CDS: -0.29 Total: -14.63 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 3.99 Total: 6.65 kcal Atomic # 7 Polarization: -0.59 SS G_CDS: -3.86 Total: -4.45 kcal Atomic # 8 Polarization: -2.64 SS G_CDS: -1.92 Total: -4.56 kcal Atomic # 9 Polarization: -0.95 SS G_CDS: 0.78 Total: -0.17 kcal Atomic # 14 Polarization: 2.28 SS G_CDS: 2.24 Total: 4.51 kcal Atomic # 16 Polarization: 0.26 SS G_CDS: -1.26 Total: -1.00 kcal Total: -13.31 -0.32 -13.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14412252_15704122.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.149 kcal (2) G-P(sol) polarization free energy of solvation -13.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds