Wall clock time and date at job start Mon Mar 8 2021 06:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46496 * 119.99759 * 2 1 4 4 C 1.50695 * 109.47390 * 89.99689 * 3 2 1 5 5 C 1.38213 * 120.00149 * 270.26933 * 4 3 2 6 6 C 1.38257 * 119.99889 * 179.97438 * 5 4 3 7 7 C 1.38207 * 120.00295 * 359.97438 * 6 5 4 8 8 C 1.38256 * 120.00214 * 359.96893 * 7 6 5 9 Xx 1.80998 * 120.00478 * 179.97438 * 8 7 6 10 9 F 7.25612 * 136.05760 * 81.64243 * 2 1 3 11 10 F 1.61000 * 90.00072 * 315.00820 * 9 8 7 12 11 F 1.60997 * 90.00092 * 135.00527 * 9 8 7 13 12 F 1.61001 * 89.99597 * 45.00523 * 9 8 7 14 13 F 1.61001 * 90.00403 * 225.00523 * 9 8 7 15 14 C 1.38214 * 119.99664 * 359.82467 * 8 7 6 16 15 C 1.38399 * 120.00229 * 179.97438 * 2 1 3 17 16 N 1.32490 * 119.22040 * 180.27097 * 16 2 1 18 17 C 1.32278 * 120.74371 * 179.97438 * 17 16 2 19 18 C 1.38601 * 119.19824 * 0.02562 * 18 17 16 20 19 C 1.50694 * 120.72172 * 180.02562 * 19 18 17 21 20 O 1.42901 * 109.46896 * 65.00462 * 20 19 18 22 21 Si 1.86306 * 109.47246 * 185.00141 * 20 19 18 23 22 H 1.48500 * 109.46989 * 60.00177 * 22 20 19 24 23 H 1.48495 * 109.47266 * 180.02562 * 22 20 19 25 24 H 1.48497 * 109.47156 * 300.00720 * 22 20 19 26 25 C 1.38609 * 118.55746 * 0.02562 * 19 18 17 27 26 N 1.32279 * 119.19450 * 359.74479 * 26 19 18 28 27 H 1.09001 * 109.47060 * 90.00688 * 1 2 3 29 28 H 1.09004 * 109.47073 * 210.00177 * 1 2 3 30 29 H 1.09000 * 109.47212 * 330.00260 * 1 2 3 31 30 H 1.09001 * 109.47057 * 210.00204 * 3 2 1 32 31 H 1.08999 * 109.47333 * 329.99764 * 3 2 1 33 32 H 1.08000 * 119.99799 * 359.97438 * 5 4 3 34 33 H 1.08005 * 120.00005 * 179.97438 * 6 5 4 35 34 H 1.08005 * 120.00576 * 179.97438 * 7 6 5 36 35 H 1.08005 * 120.00179 * 179.97438 * 15 8 7 37 36 H 1.07996 * 120.39888 * 179.97438 * 18 17 16 38 37 H 1.09001 * 109.47340 * 305.00452 * 20 19 18 39 38 H 0.96696 * 113.99887 * 60.00028 * 21 20 19 40 39 H 1.07996 * 120.40493 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 1.4207 5 6 1.5245 2.4972 2.0741 6 6 1.7547 2.8960 3.3778 7 6 2.9085 2.5008 4.0278 8 6 3.8324 1.7062 3.3747 9 9 6.6897 0.7319 4.9818 10 9 5.5469 2.6886 4.7760 11 9 5.1409 -0.3101 3.6756 12 9 4.4817 0.8253 5.5358 13 9 6.2061 1.5532 2.9157 14 6 3.6003 1.3041 2.0729 15 6 2.1571 -1.1985 0.0005 16 7 3.4819 -1.1805 0.0060 17 6 4.1735 -2.3080 0.0072 18 6 3.4958 -3.5170 0.0021 19 6 4.2493 -4.8220 0.0038 20 8 4.9745 -4.9516 1.2283 21 14 3.0452 -6.2346 -0.1573 22 1 2.2916 -6.0999 -1.4297 23 1 3.7877 -7.5206 -0.1550 24 1 2.0966 -6.2091 0.9849 25 6 2.1098 -3.4996 -0.0047 26 7 1.4791 -2.3369 -0.0009 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 3.1499 1.1384 -0.5139 31 1 1.6084 2.0284 -0.5139 32 1 0.6226 2.8057 1.5663 33 1 1.0328 3.5163 3.8882 34 1 3.0886 2.8126 5.0461 35 1 4.3222 0.6837 1.5625 36 1 5.2533 -2.2868 0.0112 37 1 4.9456 -4.8407 -0.8346 38 1 4.4170 -4.9430 2.0183 39 1 1.5516 -4.4241 -0.0092 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14414426_12175864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:07:51 Heat of formation + Delta-G solvation = 437.710561 kcal Electronic energy + Delta-G solvation = -32345.042231 eV Core-core repulsion = 27038.735108 eV Total energy + Delta-G solvation = -5306.307124 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 353.103 amu Computer time = 33.89 seconds Orbital eigenvalues (eV) -44.40585 -44.26553 -44.21263 -44.12213 -43.55502 -42.24676 -41.17389 -38.49255 -37.40928 -34.87470 -33.77175 -32.66379 -32.26104 -28.82218 -27.88375 -25.70160 -25.21928 -23.93897 -23.24371 -22.14510 -19.24527 -18.86490 -18.25521 -17.99146 -17.09631 -16.92462 -16.41779 -16.18403 -16.02505 -15.83494 -15.61059 -15.26440 -15.14831 -15.00982 -14.96671 -14.81588 -14.76319 -14.37937 -14.22374 -14.19069 -14.16454 -14.06507 -14.01810 -13.92402 -13.64478 -13.63487 -13.41485 -13.22426 -13.16457 -12.83092 -12.74317 -12.31018 -12.25350 -12.21334 -11.95927 -11.89338 -11.71204 -11.43431 -11.27722 -10.77122 -10.69973 -10.58875 -10.05995 -9.02733 -5.28490 -4.82698 -3.07876 -0.70312 -0.51531 -0.02817 0.04743 1.14804 1.43830 1.48529 1.51732 1.91279 2.04295 2.65687 2.72471 2.97612 3.07658 3.38648 3.45885 3.50349 3.54039 3.64024 3.65355 3.73104 3.86599 4.15523 4.19904 4.38365 4.41718 4.53501 4.61693 4.64266 4.72849 4.73704 4.82420 4.89962 5.02369 5.13497 5.21164 5.72657 5.76643 6.20973 6.63617 7.11667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.581 5.581 3 C 0.167 3.833 4 C -0.049 4.049 5 C -0.063 4.063 6 C -0.035 4.035 7 C -0.116 4.116 8 C 0.315 3.685 9 F -0.221 7.221 10 F -0.160 7.160 11 F -0.160 7.160 12 F -0.166 7.166 13 F -0.162 7.162 14 C -0.108 4.108 15 C 0.547 3.453 16 N -0.580 5.580 17 C 0.212 3.788 18 C -0.285 4.285 19 C -0.062 4.062 20 O -0.555 6.555 21 Si 0.974 3.026 22 H -0.249 1.249 23 H -0.272 1.272 24 H -0.249 1.249 25 C 0.185 3.815 26 N -0.572 5.572 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.160 0.840 32 H 0.220 0.780 33 H 0.227 0.773 34 H 0.180 0.820 35 H 0.161 0.839 36 H 0.175 0.825 37 H 0.129 0.871 38 H 0.386 0.614 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.202 5.523 -7.279 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.296 5.296 3 C 0.045 3.955 4 C -0.051 4.051 5 C -0.080 4.080 6 C -0.051 4.051 7 C -0.134 4.134 8 C 0.311 3.689 9 F -0.221 7.221 10 F -0.158 7.158 11 F -0.159 7.159 12 F -0.164 7.164 13 F -0.160 7.160 14 C -0.126 4.126 15 C 0.191 3.809 16 N -0.302 5.302 17 C 0.045 3.955 18 C -0.293 4.293 19 C -0.173 4.173 20 O -0.361 6.361 21 Si 0.798 3.202 22 H -0.172 1.172 23 H -0.197 1.197 24 H -0.172 1.172 25 C 0.017 3.983 26 N -0.293 5.293 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.130 0.870 30 H 0.114 0.886 31 H 0.177 0.823 32 H 0.237 0.763 33 H 0.243 0.757 34 H 0.197 0.803 35 H 0.179 0.821 36 H 0.192 0.808 37 H 0.146 0.854 38 H 0.235 0.765 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -15.973 5.882 -7.816 18.730 hybrid contribution 2.419 -1.357 1.359 3.089 sum -13.554 4.524 -6.458 15.681 Atomic orbital electron populations 1.21952 0.75180 1.04693 1.02981 1.46263 1.06775 1.00338 1.76271 1.20781 1.00482 0.85048 0.89207 1.20908 0.88691 0.97236 0.98287 1.22409 0.99714 0.91912 0.93947 1.22175 0.90994 0.97758 0.94221 1.22347 0.89785 0.96003 1.05217 1.27938 0.54136 1.02643 0.84197 2.00000 1.94894 1.81253 1.45945 1.99919 1.89043 1.55414 1.71474 1.99921 1.99040 1.69693 1.47210 1.99919 1.73158 1.90600 1.52771 1.99921 1.95210 1.96746 1.24153 1.21965 0.99828 1.01460 0.89366 1.19702 0.85536 0.87340 0.88279 1.67933 1.07187 1.32258 1.22849 1.23062 1.00975 0.86118 0.85386 1.21781 0.95962 0.98953 1.12577 1.24789 1.03053 0.98849 0.90638 1.86520 1.37825 1.96001 1.15797 0.85333 0.76954 0.76525 0.81416 1.17238 1.19661 1.17236 1.23125 0.91420 0.95962 0.87771 1.67922 1.40946 0.98053 1.22411 0.91928 0.91611 0.86972 0.88633 0.82286 0.76295 0.75695 0.80324 0.82142 0.80779 0.85377 0.76503 0.80722 Number of geometries 1 Number of calculations of the screened coulomb radii 10 The total number of SCF iterations 656. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 -1.17 10.44 127.77 1.33 0.16 16 2 N -0.58 4.42 2.96 -740.23 -2.19 2.23 16 3 C 0.17 -2.19 5.53 85.63 0.47 -1.71 16 4 C -0.05 0.60 5.46 -19.87 -0.11 0.49 16 5 C -0.06 1.27 9.70 22.27 0.22 1.49 16 6 C -0.03 0.65 10.05 22.27 0.22 0.87 16 7 C -0.12 0.85 8.62 22.27 0.19 1.04 16 8 C 0.32 0.68 4.82 22.27 0.11 0.78 16 9 F -0.22 -6.46 16.66 44.97 0.75 -5.71 16 10 F -0.16 -2.83 15.31 44.97 0.69 -2.14 16 11 F -0.16 -3.19 15.31 44.97 0.69 -2.50 16 12 F -0.17 -3.03 15.32 44.97 0.69 -2.35 16 13 F -0.16 -3.13 15.31 44.97 0.69 -2.44 16 14 C -0.11 0.23 8.24 22.27 0.18 0.41 16 15 C 0.55 0.31 8.17 261.49 2.14 2.45 16 16 N -0.58 -1.35 8.33 -198.00 -1.65 -3.00 16 17 C 0.21 0.45 10.99 84.71 0.93 1.39 16 18 C -0.28 -0.02 5.36 -19.69 -0.11 -0.13 16 19 C -0.06 0.12 2.83 71.23 0.20 0.32 16 20 O -0.55 -0.79 12.85 -148.98 -1.91 -2.71 16 21 Si 0.97 -2.86 25.21 68.60 1.73 -1.14 16 22 H -0.25 0.70 7.11 99.48 0.71 1.41 16 23 H -0.27 -0.33 7.11 99.48 0.71 0.38 16 24 H -0.25 0.79 7.05 99.48 0.70 1.49 16 25 C 0.18 0.05 9.92 84.71 0.84 0.89 16 26 N -0.57 -1.14 9.11 -197.99 -1.80 -2.95 16 27 H 0.06 -0.78 8.14 -2.39 -0.02 -0.80 16 28 H 0.07 -0.51 7.33 -2.38 -0.02 -0.53 16 29 H 0.11 -2.35 8.06 -2.39 -0.02 -2.37 16 30 H 0.10 -0.85 7.28 -2.39 -0.02 -0.87 16 31 H 0.16 -3.52 8.02 -2.39 -0.02 -3.54 16 32 H 0.22 -6.62 8.05 -2.91 -0.02 -6.65 16 33 H 0.23 -6.16 8.06 -2.91 -0.02 -6.18 16 34 H 0.18 -1.26 7.40 -2.91 -0.02 -1.28 16 35 H 0.16 0.51 6.63 -2.91 -0.02 0.49 16 36 H 0.18 0.10 8.06 -2.91 -0.02 0.07 16 37 H 0.13 -0.52 7.96 -2.39 -0.02 -0.54 16 38 H 0.39 -1.46 8.70 -74.06 -0.64 -2.10 16 39 H 0.18 -0.64 5.03 -2.91 -0.01 -0.66 16 Total: 0.00 -41.45 356.50 5.54 -35.91 By element: Atomic # 1 Polarization: -22.90 SS G_CDS: 1.23 Total: -21.67 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 6.63 Total: 8.46 kcal Atomic # 7 Polarization: 1.92 SS G_CDS: -5.64 Total: -3.72 kcal Atomic # 8 Polarization: -0.79 SS G_CDS: -1.91 Total: -2.71 kcal Atomic # 9 Polarization: -18.64 SS G_CDS: 3.50 Total: -15.14 kcal Atomic # 14 Polarization: -2.86 SS G_CDS: 1.73 Total: -1.14 kcal Total: -41.45 5.54 -35.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14414426_12175864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 473.620 kcal (2) G-P(sol) polarization free energy of solvation -41.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 432.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 437.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 33.89 seconds