Wall clock time and date at job start Mon Mar 8 2021 04:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00077 * 2 1 4 4 O 1.20833 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00302 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.47473 * 59.99636 * 5 3 2 7 7 C 1.52999 * 109.47581 * 180.02562 * 5 3 2 8 8 C 1.52997 * 109.47606 * 179.97438 * 7 5 3 9 9 C 1.52998 * 109.46630 * 299.99508 * 8 7 5 10 10 H 1.09003 * 109.47339 * 179.97438 * 9 8 7 11 11 N 1.46495 * 109.47792 * 299.99856 * 9 8 7 12 12 C 1.38396 * 120.00766 * 205.00370 * 11 9 8 13 13 N 1.32494 * 119.21329 * 359.72840 * 12 11 9 14 14 C 1.32284 * 120.74108 * 179.71874 * 13 12 11 15 15 C 1.38601 * 119.19502 * 0.54612 * 14 13 12 16 16 C 1.50702 * 120.72510 * 179.75149 * 15 14 13 17 17 O 1.42898 * 109.47347 * 119.97612 * 16 15 14 18 18 Si 1.86304 * 109.46770 * 359.97438 * 16 15 14 19 19 C 1.38615 * 118.56118 * 359.72702 * 15 14 13 20 20 N 1.32281 * 119.19161 * 0.02562 * 19 15 14 21 21 C 1.53006 * 109.47286 * 60.00179 * 9 8 7 22 22 C 1.52997 * 109.46769 * 299.99910 * 21 9 8 23 23 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47070 * 300.00162 * 1 2 3 25 25 H 1.09001 * 109.46626 * 60.00180 * 1 2 3 26 26 H 1.09005 * 109.46903 * 300.00018 * 7 5 3 27 27 H 1.09000 * 109.47608 * 59.99121 * 7 5 3 28 28 H 1.09000 * 109.47303 * 59.98998 * 8 7 5 29 29 H 1.08995 * 109.47152 * 179.97438 * 8 7 5 30 30 H 0.97008 * 119.99116 * 25.00066 * 11 9 8 31 31 H 1.07993 * 120.40404 * 180.29812 * 14 13 12 32 32 H 1.08999 * 109.47589 * 239.97782 * 16 15 14 33 33 H 0.96703 * 113.99703 * 300.00487 * 17 16 15 34 34 H 1.48501 * 110.00071 * 58.68166 * 18 16 15 35 35 H 1.48491 * 109.99919 * 179.97438 * 18 16 15 36 36 H 1.07997 * 120.40534 * 179.97438 * 19 15 14 37 37 H 1.09003 * 109.46914 * 59.99560 * 21 9 8 38 38 H 1.09001 * 109.47019 * 179.97438 * 21 9 8 39 39 H 1.09003 * 109.47116 * 299.99526 * 22 21 9 40 40 H 1.09008 * 109.47127 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9558 0.7809 -0.8907 7 6 4.0002 2.7420 0.0002 8 6 5.5281 2.8222 0.0002 9 6 6.0750 2.1281 1.2492 10 1 7.1636 2.1847 1.2491 11 7 5.5512 2.7915 2.4457 12 6 6.2507 2.7221 3.6379 13 7 7.3898 2.0467 3.6809 14 6 8.0856 1.9654 4.8029 15 6 7.6038 2.5875 5.9439 16 6 8.3657 2.5122 7.2420 17 8 8.7128 3.8314 7.6678 18 14 9.9173 1.5112 6.9941 19 6 6.4062 3.2809 5.8651 20 7 5.7624 3.3275 4.7104 21 6 5.6412 0.6608 1.2485 22 6 4.1134 0.5807 1.2484 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 3.6101 3.2367 -0.8894 27 1 3.6108 3.2357 0.8905 28 1 5.9179 2.3284 -0.8899 29 1 5.8371 3.8674 0.0003 30 1 4.7140 3.2797 2.4022 31 1 9.0159 1.4175 4.8306 32 1 7.7443 2.0371 8.0011 33 1 9.2667 4.3145 7.0394 34 1 10.7585 2.1311 5.9389 35 1 10.6780 1.4300 8.2668 36 1 6.0031 3.7764 6.7360 37 1 6.0310 0.1671 0.3583 38 1 6.0313 0.1662 2.1381 39 1 3.7236 1.0744 2.1386 40 1 3.8043 -0.4646 1.2474 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14474852_12175864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:44:06 Heat of formation + Delta-G solvation = -56.751235 kcal Electronic energy + Delta-G solvation = -23916.542519 eV Core-core repulsion = 20312.355156 eV Total energy + Delta-G solvation = -3604.187363 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.18486 -41.76392 -39.87699 -38.10728 -37.58930 -35.70169 -34.71424 -32.82966 -31.83898 -30.84892 -28.62326 -26.57251 -25.89331 -24.70943 -23.69600 -23.27810 -21.81367 -20.53255 -19.53425 -18.69277 -18.40711 -18.09487 -17.84255 -17.44317 -16.62872 -16.47130 -16.14337 -15.94832 -15.64535 -15.42264 -14.96918 -14.92015 -14.55981 -14.23837 -14.02362 -13.89958 -13.75399 -13.26584 -13.19850 -13.03009 -12.94463 -12.28508 -12.26769 -12.10198 -11.89187 -11.87991 -11.73217 -11.65152 -11.60760 -11.14724 -11.05782 -10.65265 -10.03585 -9.06558 -4.89787 0.08418 0.16103 1.08501 1.33597 1.62431 1.70383 1.87613 2.00198 2.81763 3.18992 3.43095 3.47331 3.61031 3.67179 3.69427 3.74953 3.82152 4.00008 4.06541 4.16523 4.24751 4.25613 4.26787 4.35678 4.42174 4.44536 4.63773 4.65939 4.67470 4.79703 4.83972 4.97058 5.06369 5.12768 5.13764 5.25135 5.31195 5.33266 5.39540 5.82390 6.06656 6.41477 6.49948 6.63882 7.29339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.460 3.540 4 O -0.542 6.542 5 C -0.073 4.073 6 H 0.137 0.863 7 C -0.104 4.104 8 C -0.117 4.117 9 C 0.158 3.842 10 H 0.094 0.906 11 N -0.687 5.687 12 C 0.554 3.446 13 N -0.569 5.569 14 C 0.195 3.805 15 C -0.286 4.286 16 C -0.058 4.058 17 O -0.548 6.548 18 Si 0.763 3.237 19 C 0.211 3.789 20 N -0.597 5.597 21 C -0.120 4.120 22 C -0.102 4.102 23 H 0.129 0.871 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.411 0.589 31 H 0.189 0.811 32 H 0.129 0.871 33 H 0.385 0.615 34 H -0.279 1.279 35 H -0.301 1.301 36 H 0.178 0.822 37 H 0.101 0.899 38 H 0.064 0.936 39 H 0.048 0.952 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.317 -5.006 -2.477 6.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.305 3.695 4 O -0.431 6.431 5 C -0.092 4.092 6 H 0.155 0.845 7 C -0.141 4.141 8 C -0.155 4.155 9 C 0.053 3.947 10 H 0.112 0.888 11 N -0.324 5.324 12 C 0.197 3.803 13 N -0.292 5.292 14 C 0.027 3.973 15 C -0.295 4.295 16 C -0.168 4.168 17 O -0.356 6.356 18 Si 0.668 3.332 19 C 0.044 3.956 20 N -0.320 5.320 21 C -0.159 4.159 22 C -0.140 4.140 23 H 0.147 0.853 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.127 0.873 29 H 0.095 0.905 30 H 0.249 0.751 31 H 0.205 0.795 32 H 0.147 0.853 33 H 0.234 0.766 34 H -0.205 1.205 35 H -0.229 1.229 36 H 0.195 0.805 37 H 0.119 0.881 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.121 -4.944 -3.031 6.175 hybrid contribution -0.385 1.706 0.881 1.958 sum 1.736 -3.238 -2.151 4.257 Atomic orbital electron populations 1.23505 0.75240 1.05564 1.02281 1.86508 1.24586 1.33196 1.83556 1.24478 0.93206 0.80959 0.70905 1.90674 1.68217 1.37467 1.46784 1.21241 0.84817 0.99729 1.03401 0.84495 1.21413 0.96517 0.93230 1.02978 1.21835 0.93695 1.02177 0.97812 1.21118 0.99399 0.91703 0.82455 0.88801 1.44535 1.25246 1.57029 1.05593 1.19659 0.86587 0.86934 0.87084 1.67986 1.08227 1.23203 1.29770 1.23199 0.97061 0.90860 0.86133 1.21676 1.00814 1.08029 0.98961 1.24888 1.07574 0.89452 0.94911 1.86585 1.72542 1.27032 1.49418 0.94296 0.74471 0.86933 0.77530 1.23081 0.89097 0.89485 0.93957 1.67998 1.37270 1.26248 1.00434 1.21905 0.93894 0.96082 1.03994 1.21425 0.96759 1.00998 0.94839 0.85296 0.92413 0.92027 0.90750 0.92642 0.87312 0.90454 0.75057 0.79474 0.85325 0.76573 1.20500 1.22926 0.80547 0.88099 0.91677 0.93274 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.19 16 2 O -0.36 -1.09 10.47 -51.35 -0.54 -1.62 16 3 C 0.46 1.96 7.25 71.23 0.52 2.48 16 4 O -0.54 -5.93 15.73 21.94 0.35 -5.59 16 5 C -0.07 0.20 2.63 -11.54 -0.03 0.17 16 6 H 0.14 -1.01 8.14 -2.39 -0.02 -1.03 16 7 C -0.10 0.27 4.32 30.59 0.13 0.40 16 8 C -0.12 0.73 5.61 30.59 0.17 0.90 16 9 C 0.16 -0.56 2.77 44.99 0.12 -0.43 16 10 H 0.09 -0.21 7.51 -2.39 -0.02 -0.23 16 11 N -0.69 -0.72 4.38 -330.44 -1.45 -2.17 16 12 C 0.55 2.72 8.40 261.49 2.20 4.91 16 13 N -0.57 -1.75 9.21 -198.00 -1.82 -3.57 16 14 C 0.19 -0.13 9.92 84.71 0.84 0.72 16 15 C -0.29 0.20 5.40 -19.69 -0.11 0.09 16 16 C -0.06 0.18 2.85 71.24 0.20 0.38 16 17 O -0.55 -0.19 12.79 -148.98 -1.91 -2.09 16 18 Si 0.76 -3.43 29.87 68.60 2.05 -1.38 16 19 C 0.21 0.57 10.92 84.72 0.93 1.49 16 20 N -0.60 -3.92 10.46 -197.99 -2.07 -5.99 16 21 C -0.12 0.57 5.62 30.60 0.17 0.75 16 22 C -0.10 0.29 4.98 30.59 0.15 0.44 16 23 H 0.13 -0.79 8.14 -2.39 -0.02 -0.81 16 24 H 0.06 0.05 8.13 -2.39 -0.02 0.03 16 25 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 26 H 0.07 -0.09 8.10 -2.38 -0.02 -0.11 16 27 H 0.05 0.04 6.46 -2.39 -0.02 0.03 16 28 H 0.11 -1.10 8.14 -2.39 -0.02 -1.12 16 29 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 30 H 0.41 0.64 6.98 -92.70 -0.65 -0.01 16 31 H 0.19 -1.18 5.04 -2.91 -0.01 -1.20 16 32 H 0.13 -0.63 7.96 -2.39 -0.02 -0.65 16 33 H 0.39 -1.80 8.70 -74.06 -0.64 -2.45 16 34 H -0.28 0.26 7.11 99.48 0.71 0.97 16 35 H -0.30 -1.11 7.11 99.48 0.71 -0.40 16 36 H 0.18 -0.05 8.06 -2.91 -0.02 -0.07 16 37 H 0.10 -0.88 8.14 -2.39 -0.02 -0.90 16 38 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 39 H 0.05 0.06 7.60 -2.39 -0.02 0.04 16 40 H 0.08 -0.25 8.11 -2.38 -0.02 -0.27 16 Total: 0.00 -18.62 327.98 0.93 -17.69 By element: Atomic # 1 Polarization: -8.58 SS G_CDS: -0.18 Total: -8.76 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 6.50 Total: 13.49 kcal Atomic # 7 Polarization: -6.40 SS G_CDS: -5.34 Total: -11.73 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -2.10 Total: -9.30 kcal Atomic # 14 Polarization: -3.43 SS G_CDS: 2.05 Total: -1.38 kcal Total: -18.62 0.93 -17.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14474852_12175864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.062 kcal (2) G-P(sol) polarization free energy of solvation -18.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds