Wall clock time and date at job start Mon Mar 8 2021 04:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34235 * 116.99569 * 2 1 4 4 O 1.20813 * 120.00426 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99548 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.46934 * 299.99950 * 5 3 2 7 7 C 1.52994 * 109.47457 * 60.00006 * 5 3 2 8 8 C 1.53002 * 109.47421 * 179.97438 * 7 5 3 9 9 C 1.53000 * 109.47022 * 300.00341 * 8 7 5 10 10 H 1.08995 * 109.47062 * 180.02562 * 9 8 7 11 11 N 1.46500 * 109.46817 * 299.99510 * 9 8 7 12 12 C 1.39004 * 120.00487 * 275.00254 * 11 9 8 13 13 N 1.32392 * 119.70730 * 180.02562 * 12 11 9 14 14 C 1.31976 * 121.61887 * 179.72422 * 13 12 11 15 15 C 1.38022 * 120.85502 * 0.54346 * 14 13 12 16 16 C 1.50699 * 120.33216 * 179.72353 * 15 14 13 17 17 O 1.42903 * 109.47152 * 244.72624 * 16 15 14 18 18 Si 1.86305 * 109.47184 * 4.72096 * 16 15 14 19 19 C 1.38880 * 119.33082 * 359.45053 * 15 14 13 20 20 C 1.38301 * 118.50424 * 0.27084 * 19 15 14 21 21 C 1.52994 * 109.47301 * 59.99585 * 9 8 7 22 22 C 1.53000 * 109.46927 * 180.02562 * 5 3 2 23 23 H 1.09001 * 109.47370 * 59.99911 * 1 2 3 24 24 H 1.08995 * 109.46959 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46834 * 300.00025 * 1 2 3 26 26 H 1.09004 * 109.47265 * 299.99852 * 7 5 3 27 27 H 1.09005 * 109.46956 * 59.99719 * 7 5 3 28 28 H 1.08997 * 109.47132 * 179.97438 * 8 7 5 29 29 H 1.09003 * 109.46526 * 59.99690 * 8 7 5 30 30 H 0.97001 * 119.99900 * 95.00434 * 11 9 8 31 31 H 1.08005 * 119.56897 * 180.28660 * 14 13 12 32 32 H 1.08997 * 109.47198 * 124.72302 * 16 15 14 33 33 H 0.96700 * 114.00311 * 180.02562 * 17 16 15 34 34 H 1.48499 * 109.99670 * 178.68093 * 18 16 15 35 35 H 1.48497 * 110.00233 * 300.00062 * 18 16 15 36 36 H 1.07998 * 120.74532 * 180.25278 * 19 15 14 37 37 H 1.07999 * 120.44790 * 179.97438 * 20 19 15 38 38 H 1.08997 * 109.47094 * 60.00033 * 21 9 8 39 39 H 1.09004 * 109.47265 * 180.02562 * 21 9 8 40 40 H 1.08994 * 109.47206 * 59.99764 * 22 5 3 41 41 H 1.08997 * 109.47020 * 299.99587 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9564 0.7807 0.8891 7 6 4.1129 0.5817 -1.2501 8 6 5.6408 0.6623 -1.2510 9 6 6.0741 2.1297 -1.2511 10 1 7.1625 2.1871 -1.2522 11 7 5.5494 2.7936 -2.4470 12 6 6.2513 2.7247 -3.6448 13 7 5.7719 3.3273 -4.7218 14 6 6.4096 3.2907 -5.8767 15 6 7.6023 2.6081 -6.0054 16 6 8.3175 2.5688 -7.3313 17 8 8.3490 1.2248 -7.8158 18 14 7.4180 3.6488 -8.5542 19 6 8.1396 1.9627 -4.8992 20 6 7.4516 2.0233 -3.7010 21 6 5.5275 2.8230 -0.0016 22 6 4.0001 2.7422 0.0002 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.8039 -0.4636 -1.2502 27 1 3.7228 1.0760 -2.1399 28 1 6.0302 0.1680 -2.1410 29 1 6.0312 0.1683 -0.3612 30 1 4.7121 3.2814 -2.4029 31 1 5.9906 3.7980 -6.7332 32 1 9.3368 2.9336 -7.2053 33 1 8.7957 1.1241 -8.6675 34 1 8.1311 3.6437 -9.8568 35 1 6.0269 3.1618 -8.7349 36 1 9.0736 1.4254 -4.9731 37 1 7.8406 1.5325 -2.8211 38 1 5.9179 2.3290 0.8881 39 1 5.8358 3.8685 -0.0019 40 1 3.6107 3.2357 0.8906 41 1 3.6100 3.2368 -0.8893 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14474852_13915762.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:44:09 Heat of formation + Delta-G solvation = -73.148684 kcal Electronic energy + Delta-G solvation = -23761.266680 eV Core-core repulsion = 20221.794181 eV Total energy + Delta-G solvation = -3539.472499 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.94452 -41.36254 -39.77029 -37.93867 -37.59344 -35.62595 -33.54687 -32.29339 -31.72976 -30.52113 -28.63278 -26.28709 -25.15274 -24.45733 -23.61697 -22.67922 -21.74241 -20.34781 -18.80396 -18.69152 -18.47031 -17.94245 -17.86552 -17.40802 -16.61707 -16.27633 -16.02935 -15.69441 -15.31711 -15.08843 -14.87897 -14.81444 -14.28575 -14.12028 -13.97437 -13.89275 -13.75300 -13.68588 -13.24209 -13.07890 -12.97769 -12.36901 -12.23400 -12.10757 -11.99655 -11.89956 -11.62077 -11.54929 -11.18450 -10.94591 -10.70264 -10.57592 -10.27856 -8.64101 -4.92451 0.25845 0.45058 1.06943 1.32562 1.58532 1.69504 1.95008 2.17634 2.82348 3.45971 3.48480 3.57558 3.64245 3.68665 3.86839 3.98426 4.04815 4.06707 4.12924 4.15136 4.22264 4.23202 4.32384 4.33867 4.42190 4.45903 4.53218 4.63020 4.71493 4.79901 4.82904 4.90039 5.06636 5.07098 5.13309 5.14632 5.27725 5.29550 5.32929 5.37876 5.58950 6.10918 6.55086 6.62144 6.64102 7.18778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.458 3.542 4 O -0.542 6.542 5 C -0.073 4.073 6 H 0.138 0.862 7 C -0.104 4.104 8 C -0.129 4.129 9 C 0.149 3.851 10 H 0.103 0.897 11 N -0.715 5.715 12 C 0.396 3.604 13 N -0.571 5.571 14 C 0.141 3.859 15 C -0.200 4.200 16 C -0.062 4.062 17 O -0.559 6.559 18 Si 0.747 3.253 19 C -0.013 4.013 20 C -0.237 4.237 21 C -0.116 4.116 22 C -0.104 4.104 23 H 0.056 0.944 24 H 0.129 0.871 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.400 0.600 31 H 0.158 0.842 32 H 0.098 0.902 33 H 0.394 0.606 34 H -0.281 1.281 35 H -0.304 1.304 36 H 0.149 0.851 37 H 0.158 0.842 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.343 -1.441 3.299 6.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.303 3.697 4 O -0.432 6.432 5 C -0.091 4.091 6 H 0.155 0.845 7 C -0.141 4.141 8 C -0.168 4.168 9 C 0.044 3.956 10 H 0.121 0.879 11 N -0.347 5.347 12 C 0.160 3.840 13 N -0.289 5.289 14 C -0.015 4.015 15 C -0.205 4.205 16 C -0.172 4.172 17 O -0.369 6.369 18 Si 0.653 3.347 19 C -0.039 4.039 20 C -0.262 4.262 21 C -0.153 4.153 22 C -0.142 4.142 23 H 0.075 0.925 24 H 0.147 0.853 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.123 0.877 30 H 0.236 0.764 31 H 0.175 0.825 32 H 0.115 0.885 33 H 0.244 0.756 34 H -0.208 1.208 35 H -0.232 1.232 36 H 0.167 0.833 37 H 0.175 0.825 38 H 0.128 0.872 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.684 -0.871 3.341 5.049 hybrid contribution 0.038 -1.072 -0.930 1.420 sum 3.722 -1.943 2.411 4.842 Atomic orbital electron populations 1.23498 0.75278 1.05544 1.02273 1.86510 1.24575 1.33271 1.83589 1.24541 0.93330 0.80929 0.70895 1.90668 1.68243 1.37478 1.46762 1.21251 0.84678 0.99879 1.03332 0.84452 1.21406 0.97061 1.00819 0.94853 1.22044 0.94060 0.96460 1.04224 1.21248 0.99596 0.91538 0.83191 0.87921 1.44864 1.25867 1.57858 1.06123 1.18683 0.89078 0.89701 0.86526 1.67147 1.36234 1.25670 0.99879 1.22353 0.90499 0.94598 0.94093 1.20087 0.98585 1.05750 0.96120 1.24613 1.05124 0.89267 0.98231 1.86551 1.81798 1.26366 1.42205 0.94336 0.75811 0.87355 0.77169 1.21438 0.98850 0.92803 0.90778 1.21690 0.96733 1.07105 1.00629 1.21794 0.93374 1.02379 0.97779 1.21410 0.96942 0.93040 1.02839 0.92519 0.85321 0.91938 0.90310 0.93423 0.91427 0.87686 0.76379 0.82514 0.88452 0.75577 1.20805 1.23180 0.83299 0.82499 0.87241 0.90169 0.90918 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.01 10.56 113.37 1.20 1.21 16 2 O -0.36 -1.38 10.47 -51.47 -0.54 -1.92 16 3 C 0.46 2.27 7.26 71.24 0.52 2.79 16 4 O -0.54 -6.36 15.73 22.00 0.35 -6.01 16 5 C -0.07 0.19 2.63 -11.54 -0.03 0.16 16 6 H 0.14 -1.04 8.14 -2.39 -0.02 -1.06 16 7 C -0.10 0.28 4.98 30.59 0.15 0.43 16 8 C -0.13 0.86 5.52 30.59 0.17 1.03 16 9 C 0.15 -0.93 2.47 44.99 0.11 -0.82 16 10 H 0.10 -0.89 6.45 -2.39 -0.02 -0.90 16 11 N -0.71 -0.04 4.40 -324.56 -1.43 -1.47 16 12 C 0.40 1.77 7.63 133.07 1.02 2.78 16 13 N -0.57 -4.98 10.39 -193.26 -2.01 -6.99 16 14 C 0.14 0.89 9.84 84.62 0.83 1.72 16 15 C -0.20 -0.77 5.39 -19.76 -0.11 -0.87 16 16 C -0.06 0.00 2.81 71.24 0.20 0.20 16 17 O -0.56 -1.36 12.82 -148.98 -1.91 -3.27 16 18 Si 0.75 -0.24 29.87 68.60 2.05 1.81 16 19 C -0.01 -0.03 9.84 22.44 0.22 0.20 16 20 C -0.24 -0.23 8.83 22.50 0.20 -0.03 16 21 C -0.12 0.89 5.61 30.58 0.17 1.06 16 22 C -0.10 0.28 4.32 30.58 0.13 0.41 16 23 H 0.06 0.10 8.13 -2.39 -0.02 0.08 16 24 H 0.13 -0.68 8.14 -2.39 -0.02 -0.70 16 25 H 0.06 0.04 8.13 -2.39 -0.02 0.03 16 26 H 0.08 -0.20 8.11 -2.39 -0.02 -0.22 16 27 H 0.05 0.11 7.60 -2.38 -0.02 0.09 16 28 H 0.07 -0.29 7.66 -2.39 -0.02 -0.31 16 29 H 0.10 -1.17 8.14 -2.39 -0.02 -1.19 16 30 H 0.40 0.80 6.99 -92.71 -0.65 0.15 16 31 H 0.16 0.55 4.87 -2.91 -0.01 0.54 16 32 H 0.10 -0.45 7.96 -2.39 -0.02 -0.47 16 33 H 0.39 -2.23 8.74 -74.06 -0.65 -2.87 16 34 H -0.28 -0.86 7.11 99.48 0.71 -0.15 16 35 H -0.30 -2.39 7.06 99.48 0.70 -1.69 16 36 H 0.15 -0.28 8.06 -2.91 -0.02 -0.30 16 37 H 0.16 -0.72 6.07 -2.91 -0.02 -0.74 16 38 H 0.11 -1.30 8.14 -2.39 -0.02 -1.32 16 39 H 0.08 -0.56 8.14 -2.39 -0.02 -0.58 16 40 H 0.07 -0.08 8.10 -2.39 -0.02 -0.10 16 41 H 0.05 0.07 6.46 -2.39 -0.02 0.06 16 Total: 0.00 -20.33 329.59 1.09 -19.24 By element: Atomic # 1 Polarization: -11.45 SS G_CDS: -0.20 Total: -11.66 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 4.78 Total: 10.26 kcal Atomic # 7 Polarization: -5.02 SS G_CDS: -3.44 Total: -8.46 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -2.10 Total: -11.20 kcal Atomic # 14 Polarization: -0.24 SS G_CDS: 2.05 Total: 1.81 kcal Total: -20.33 1.09 -19.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14474852_13915762.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.907 kcal (2) G-P(sol) polarization free energy of solvation -20.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds