Wall clock time and date at job start Mon Mar 8 2021 04:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34227 * 117.00482 * 2 1 4 4 O 1.20829 * 119.99599 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00352 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47409 * 180.02562 * 5 3 2 7 7 C 1.52995 * 109.47304 * 180.02562 * 6 5 3 8 8 H 1.08999 * 112.84933 * 316.19697 * 7 6 5 9 9 C 1.53781 * 113.69221 * 87.46267 * 7 6 5 10 10 C 1.54049 * 87.08031 * 139.98770 * 9 7 6 11 11 H 1.09000 * 113.61076 * 89.06984 * 10 9 7 12 12 N 1.46494 * 113.69866 * 220.05561 * 10 9 7 13 13 C 1.39006 * 119.99907 * 252.42089 * 12 10 9 14 14 N 1.32397 * 119.70534 * 179.72790 * 13 12 10 15 15 C 1.31977 * 121.61704 * 179.71594 * 14 13 12 16 16 C 1.38013 * 120.85739 * 0.55716 * 15 14 13 17 17 C 1.50709 * 120.33535 * 179.70571 * 16 15 14 18 18 O 1.42896 * 109.47141 * 120.02499 * 17 16 15 19 19 Si 1.86304 * 109.46853 * 0.02562 * 17 16 15 20 20 C 1.38882 * 119.33354 * 359.72958 * 16 15 14 21 21 C 1.38297 * 118.50559 * 359.97438 * 20 16 15 22 22 C 1.53781 * 113.61503 * 184.99857 * 7 6 5 23 23 H 1.09000 * 109.47317 * 59.99475 * 1 2 3 24 24 H 1.08997 * 109.47560 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46924 * 299.99436 * 1 2 3 26 26 H 1.09000 * 109.47064 * 59.99866 * 5 3 2 27 27 H 1.09004 * 109.46779 * 300.00259 * 5 3 2 28 28 H 1.09000 * 109.47431 * 59.99706 * 6 5 3 29 29 H 1.09001 * 109.46726 * 300.00118 * 6 5 3 30 30 H 1.09005 * 113.61471 * 254.54353 * 9 7 6 31 31 H 1.08996 * 113.61178 * 25.35695 * 9 7 6 32 32 H 0.97000 * 120.00537 * 72.42383 * 12 10 9 33 33 H 1.08007 * 119.56750 * 180.29124 * 15 14 13 34 34 H 1.08997 * 109.47054 * 240.02582 * 17 16 15 35 35 H 0.96703 * 114.00151 * 299.99786 * 18 17 16 36 36 H 1.48499 * 109.99801 * 180.02562 * 19 17 16 37 37 H 1.48493 * 110.00075 * 301.31940 * 19 17 16 38 38 H 1.08004 * 120.75034 * 179.97438 * 20 16 15 39 39 H 1.07998 * 120.45297 * 180.02562 * 21 20 16 40 40 H 1.09002 * 113.61445 * 334.48413 * 22 7 6 41 41 H 1.09002 * 113.61408 * 105.30144 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0003 2.7419 0.0002 7 6 5.5281 2.8219 -0.0011 8 1 5.9893 2.1196 0.6933 9 6 6.1473 2.7931 -1.4084 10 6 7.1408 3.8584 -0.9074 11 1 8.0421 3.4389 -0.4603 12 7 7.4265 4.9059 -1.8909 13 6 8.6603 4.9412 -2.5302 14 7 8.9103 5.8873 -3.4220 15 6 10.0703 5.9596 -4.0472 16 6 11.0668 5.0375 -3.7992 17 6 12.3847 5.1274 -4.5247 18 8 13.4405 5.2925 -3.5760 19 14 12.3574 6.5859 -5.6835 20 6 10.8427 4.0256 -2.8748 21 6 9.6197 3.9789 -2.2309 22 6 6.0700 4.2558 0.1224 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 3.9557 0.7808 -0.8908 27 1 3.9564 0.7804 0.8892 28 1 3.6109 3.2355 0.8906 29 1 3.6101 3.2366 -0.8893 30 1 6.6166 1.8419 -1.6596 31 1 5.4759 3.1526 -2.1882 32 1 6.7547 5.5749 -2.0960 33 1 10.2405 6.7482 -4.7653 34 1 12.5485 4.2131 -5.0952 35 1 13.3595 6.0878 -3.0319 36 1 13.6513 6.6852 -6.4055 37 1 11.2439 6.4418 -6.6552 38 1 11.6064 3.2917 -2.6634 39 1 9.4119 3.2058 -1.5059 40 1 5.3780 5.0167 -0.2387 41 1 6.4757 4.4859 1.1075 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14475076_13915762.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:45:26 Heat of formation + Delta-G solvation = -51.600315 kcal Electronic energy + Delta-G solvation = -22437.138451 eV Core-core repulsion = 18898.600359 eV Total energy + Delta-G solvation = -3538.538091 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.61276 -41.42103 -40.19328 -37.91413 -37.63944 -35.78056 -33.74029 -33.22495 -31.15982 -29.07874 -27.10080 -26.64226 -25.92031 -24.84547 -23.38529 -22.18539 -21.42326 -20.61025 -18.81881 -18.50807 -18.41526 -17.70488 -17.54164 -17.44207 -16.56508 -16.36309 -16.06510 -15.80930 -15.62002 -15.37113 -14.99282 -14.56818 -14.36223 -14.15093 -14.01564 -13.76264 -13.51489 -13.39442 -13.24281 -13.03726 -12.70733 -12.33356 -12.26789 -12.12323 -11.86656 -11.81709 -11.67890 -11.42957 -11.16897 -10.96708 -10.72420 -10.40220 -10.36521 -8.64938 -4.98941 0.23976 0.42044 1.14008 1.34870 1.63606 1.76598 1.97070 2.17896 2.83880 3.52518 3.55425 3.57673 3.63520 3.73491 3.80098 3.84709 3.87110 4.03188 4.08302 4.16731 4.23861 4.25123 4.30152 4.39582 4.51486 4.56058 4.65239 4.66435 4.68934 4.77217 4.82570 4.89063 4.95280 5.02663 5.09361 5.16719 5.25095 5.32545 5.38147 5.48561 5.63159 6.08691 6.56659 6.67876 6.80656 7.16595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.368 6.368 3 C 0.454 3.546 4 O -0.547 6.547 5 C -0.108 4.108 6 C -0.093 4.093 7 C -0.095 4.095 8 H 0.119 0.881 9 C -0.150 4.150 10 C 0.126 3.874 11 H 0.122 0.878 12 N -0.710 5.710 13 C 0.394 3.606 14 N -0.569 5.569 15 C 0.144 3.856 16 C -0.238 4.238 17 C -0.052 4.052 18 O -0.556 6.556 19 Si 0.764 3.236 20 C -0.012 4.012 21 C -0.241 4.241 22 C -0.139 4.139 23 H 0.058 0.942 24 H 0.128 0.872 25 H 0.060 0.940 26 H 0.124 0.876 27 H 0.131 0.869 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.404 0.596 33 H 0.165 0.835 34 H 0.107 0.893 35 H 0.394 0.606 36 H -0.296 1.296 37 H -0.289 1.289 38 H 0.146 0.854 39 H 0.153 0.847 40 H 0.082 0.918 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.490 -2.648 3.767 4.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C 0.299 3.701 4 O -0.437 6.437 5 C -0.145 4.145 6 C -0.131 4.131 7 C -0.114 4.114 8 H 0.137 0.863 9 C -0.189 4.189 10 C 0.021 3.979 11 H 0.139 0.861 12 N -0.341 5.341 13 C 0.158 3.842 14 N -0.287 5.287 15 C -0.013 4.013 16 C -0.244 4.244 17 C -0.163 4.163 18 O -0.364 6.364 19 Si 0.671 3.329 20 C -0.038 4.038 21 C -0.266 4.266 22 C -0.177 4.177 23 H 0.077 0.923 24 H 0.146 0.854 25 H 0.079 0.921 26 H 0.142 0.858 27 H 0.149 0.851 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.240 0.760 33 H 0.182 0.818 34 H 0.125 0.875 35 H 0.244 0.756 36 H -0.224 1.224 37 H -0.216 1.216 38 H 0.164 0.836 39 H 0.170 0.830 40 H 0.100 0.900 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.161 -2.186 2.651 3.440 hybrid contribution -0.320 -0.702 -0.111 0.779 sum -0.481 -2.888 2.540 3.876 Atomic orbital electron populations 1.23486 0.75302 1.05504 1.02274 1.86513 1.24637 1.33542 1.83739 1.24679 0.93752 0.80777 0.70892 1.90677 1.68467 1.37527 1.47071 1.21566 0.84626 1.00358 1.07947 1.21328 0.95202 0.93843 1.02753 1.22334 0.93639 0.97620 0.97816 0.86308 1.23683 0.98375 0.99842 0.97047 1.22779 0.97976 0.88160 0.88974 0.86069 1.44710 1.12696 1.33115 1.43555 1.18735 0.87276 0.89550 0.88643 1.67157 1.23677 1.25813 1.12026 1.22438 0.87274 0.96323 0.95219 1.21036 0.98657 1.00241 1.04440 1.24810 0.84659 1.09667 0.97212 1.86448 1.46194 1.50434 1.53292 0.93856 0.76336 0.83913 0.78834 1.21400 0.95687 0.95435 0.91248 1.21687 0.94749 1.03098 1.07030 1.23389 0.97261 0.97457 0.99631 0.92317 0.85392 0.92145 0.85795 0.85073 0.91663 0.92417 0.89984 0.90630 0.75972 0.81825 0.87516 0.75610 1.22370 1.21575 0.83595 0.82963 0.89992 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.17 16 2 O -0.37 -0.87 10.56 -51.39 -0.54 -1.41 16 3 C 0.45 1.36 7.96 71.23 0.57 1.93 16 4 O -0.55 -5.61 15.73 21.95 0.35 -5.27 16 5 C -0.11 0.59 5.80 29.85 0.17 0.76 16 6 C -0.09 0.39 4.34 30.59 0.13 0.52 16 7 C -0.10 0.78 3.65 -10.27 -0.04 0.74 16 8 H 0.12 -1.38 8.13 -2.39 -0.02 -1.40 16 9 C -0.15 0.97 7.45 31.21 0.23 1.20 16 10 C 0.13 -0.70 4.04 45.61 0.18 -0.52 16 11 H 0.12 -0.94 6.10 -2.39 -0.01 -0.95 16 12 N -0.71 0.39 5.53 -321.61 -1.78 -1.39 16 13 C 0.39 1.35 7.65 133.07 1.02 2.36 16 14 N -0.57 -3.63 10.39 -193.26 -2.01 -5.64 16 15 C 0.14 0.45 9.84 84.62 0.83 1.28 16 16 C -0.24 -0.31 5.40 -19.76 -0.11 -0.42 16 17 C -0.05 0.01 2.84 71.24 0.20 0.21 16 18 O -0.56 0.01 12.78 -148.98 -1.90 -1.89 16 19 Si 0.76 -0.92 29.82 68.60 2.05 1.12 16 20 C -0.01 -0.01 9.77 22.44 0.22 0.21 16 21 C -0.24 -0.11 9.29 22.50 0.21 0.10 16 22 C -0.14 0.90 7.38 31.12 0.23 1.13 16 23 H 0.06 0.00 8.13 -2.39 -0.02 -0.01 16 24 H 0.13 -0.83 8.14 -2.39 -0.02 -0.85 16 25 H 0.06 -0.01 8.13 -2.38 -0.02 -0.03 16 26 H 0.12 -1.06 8.14 -2.39 -0.02 -1.08 16 27 H 0.13 -1.30 8.14 -2.38 -0.02 -1.32 16 28 H 0.06 -0.11 8.10 -2.39 -0.02 -0.13 16 29 H 0.06 -0.03 7.81 -2.39 -0.02 -0.05 16 30 H 0.08 -0.63 8.14 -2.38 -0.02 -0.65 16 31 H 0.08 -0.26 7.90 -2.39 -0.02 -0.28 16 32 H 0.40 -0.11 8.85 -92.71 -0.82 -0.93 16 33 H 0.17 -0.12 4.88 -2.91 -0.01 -0.14 16 34 H 0.11 0.06 7.96 -2.39 -0.02 0.04 16 35 H 0.39 -2.99 8.70 -74.05 -0.64 -3.64 16 36 H -0.30 -1.74 7.11 99.48 0.71 -1.03 16 37 H -0.29 -1.17 7.11 99.48 0.71 -0.47 16 38 H 0.15 -0.28 8.06 -2.91 -0.02 -0.30 16 39 H 0.15 -0.66 6.03 -2.91 -0.02 -0.68 16 40 H 0.08 -0.38 8.08 -2.39 -0.02 -0.40 16 41 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 Total: 0.00 -19.54 342.56 0.84 -18.70 By element: Atomic # 1 Polarization: -14.54 SS G_CDS: -0.37 Total: -14.91 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 5.05 Total: 10.69 kcal Atomic # 7 Polarization: -3.24 SS G_CDS: -3.79 Total: -7.03 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -2.10 Total: -8.57 kcal Atomic # 14 Polarization: -0.92 SS G_CDS: 2.05 Total: 1.12 kcal Total: -19.54 0.84 -18.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14475076_13915762.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.899 kcal (2) G-P(sol) polarization free energy of solvation -19.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds