Wall clock time and date at job start Mon Mar 8 2021 04:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 117.00436 * 2 1 4 4 O 1.20826 * 120.00050 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00108 * 179.97438 * 3 2 1 6 6 H 1.08992 * 109.47284 * 300.00185 * 5 3 2 7 7 C 1.53002 * 109.46958 * 60.00103 * 5 3 2 8 8 C 1.52997 * 109.46978 * 180.02562 * 7 5 3 9 9 C 1.53006 * 109.47164 * 299.99874 * 8 7 5 10 10 H 1.08998 * 109.46505 * 299.99708 * 9 8 7 11 11 N 1.46500 * 109.47249 * 180.02562 * 9 8 7 12 12 C 1.38607 * 120.00141 * 84.99877 * 11 9 8 13 13 N 1.29686 * 124.94891 * 359.69363 * 12 11 9 14 14 C 1.32123 * 116.86438 * 179.81886 * 13 12 11 15 15 C 1.33329 * 114.57848 * 0.46714 * 14 13 12 16 16 C 1.50698 * 125.95316 * 179.75434 * 15 14 13 17 17 O 1.42905 * 109.47320 * 299.98260 * 16 15 14 18 18 Si 1.86292 * 109.47474 * 179.97438 * 16 15 14 19 19 S 1.70962 * 124.94719 * 180.02562 * 12 11 9 20 20 C 1.52997 * 109.47127 * 59.99836 * 9 8 7 21 21 C 1.52996 * 109.46990 * 179.97438 * 5 3 2 22 22 H 1.09006 * 109.46924 * 300.00276 * 1 2 3 23 23 H 1.09001 * 109.46755 * 59.99811 * 1 2 3 24 24 H 1.08993 * 109.47498 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47097 * 299.99808 * 7 5 3 26 26 H 1.09001 * 109.47142 * 59.99773 * 7 5 3 27 27 H 1.09001 * 109.47375 * 59.99908 * 8 7 5 28 28 H 1.09000 * 109.47140 * 179.97438 * 8 7 5 29 29 H 0.97005 * 119.99374 * 264.99912 * 11 9 8 30 30 H 1.07997 * 122.71427 * 180.22744 * 14 13 12 31 31 H 1.09004 * 109.46973 * 59.97668 * 16 15 14 32 32 H 0.96695 * 114.00359 * 179.97438 * 17 16 15 33 33 H 1.48499 * 110.00029 * 59.99788 * 18 16 15 34 34 H 1.48497 * 110.00254 * 181.32052 * 18 16 15 35 35 H 1.09002 * 109.47153 * 180.02562 * 20 9 8 36 36 H 1.09001 * 109.46832 * 60.00321 * 20 9 8 37 37 H 1.09004 * 109.47368 * 60.00232 * 21 5 3 38 38 H 1.09001 * 109.47372 * 300.00388 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9558 0.7808 0.8907 7 6 4.1139 0.5809 -1.2483 8 6 5.6418 0.6603 -1.2474 9 6 6.0762 2.1274 -1.2472 10 1 5.6873 2.6215 -2.1375 11 7 7.5393 2.2035 -1.2470 12 6 8.2370 2.1350 -2.4427 13 7 7.6945 1.9987 -3.6127 14 6 8.5130 1.9552 -4.6489 15 6 9.8062 2.0499 -4.3385 16 6 10.9545 2.0238 -5.3141 17 8 10.9433 0.7871 -6.0300 18 14 12.5615 2.1899 -4.3864 19 16 9.9387 2.2100 -2.5891 20 6 5.5287 2.8212 0.0016 21 6 4.0003 2.7419 -0.0002 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.8048 -0.4644 -1.2482 26 1 3.7245 1.0748 -2.1386 27 1 6.0308 0.1661 -0.3572 28 1 6.0319 0.1656 -2.1369 29 1 8.0196 2.3017 -0.4100 30 1 8.1631 1.8477 -5.6650 31 1 10.8533 2.8511 -6.0165 32 1 11.6564 0.7009 -6.6774 33 1 12.7114 1.0679 -3.4253 34 1 13.6999 2.1976 -5.3398 35 1 5.8378 3.8665 0.0015 36 1 5.9178 2.3270 0.8918 37 1 3.6102 3.2366 0.8893 38 1 3.6109 3.2355 -0.8906 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14475162_15704118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:45:45 Heat of formation + Delta-G solvation = -69.231892 kcal Electronic energy + Delta-G solvation = -21867.946906 eV Core-core repulsion = 18417.796498 eV Total energy + Delta-G solvation = -3450.150407 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.82192 -40.80532 -39.51806 -37.96395 -37.57426 -35.97442 -32.19528 -31.77344 -30.75403 -28.57976 -26.62005 -25.13938 -23.91133 -23.76703 -22.09581 -21.03443 -20.49921 -19.51780 -18.64840 -18.55451 -17.83547 -17.53257 -17.40489 -16.77037 -16.11710 -15.81304 -15.53494 -15.27807 -15.15684 -14.94539 -14.61317 -14.21167 -14.03780 -13.96088 -13.73882 -13.28725 -13.04397 -12.89460 -12.59334 -12.47598 -12.43921 -12.31842 -12.18832 -11.86896 -11.75803 -11.51144 -11.30085 -11.00646 -10.66811 -10.27515 -10.16395 -8.69951 -5.03811 -0.05926 0.06011 0.67022 1.09076 1.24758 1.54107 1.70885 1.89686 1.99034 2.20378 3.43422 3.47643 3.58316 3.60940 3.74394 3.93931 3.98297 4.09659 4.19623 4.27023 4.28014 4.32555 4.34401 4.43798 4.48782 4.63496 4.68125 4.74606 4.78814 4.90985 5.05444 5.07431 5.10093 5.12932 5.26530 5.33997 5.38077 5.86959 6.21107 6.59907 6.64766 7.04701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.462 3.538 4 O -0.540 6.540 5 C -0.075 4.075 6 H 0.135 0.865 7 C -0.101 4.101 8 C -0.120 4.120 9 C 0.160 3.840 10 H 0.071 0.929 11 N -0.679 5.679 12 C 0.317 3.683 13 N -0.576 5.576 14 C 0.101 3.899 15 C -0.273 4.273 16 C -0.026 4.026 17 O -0.556 6.556 18 Si 0.719 3.281 19 S 0.114 5.886 20 C -0.115 4.115 21 C -0.097 4.097 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.128 0.872 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.055 0.945 29 H 0.426 0.574 30 H 0.176 0.824 31 H 0.105 0.895 32 H 0.397 0.603 33 H -0.283 1.283 34 H -0.257 1.257 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.870 0.797 2.692 4.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.306 3.694 4 O -0.430 6.430 5 C -0.094 4.094 6 H 0.153 0.847 7 C -0.139 4.139 8 C -0.159 4.159 9 C 0.054 3.946 10 H 0.089 0.911 11 N -0.319 5.319 12 C -0.053 4.053 13 N -0.302 5.302 14 C -0.049 4.049 15 C -0.395 4.395 16 C -0.138 4.138 17 O -0.367 6.367 18 Si 0.621 3.379 19 S 0.364 5.636 20 C -0.153 4.153 21 C -0.135 4.135 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.146 0.854 25 H 0.103 0.897 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.074 0.926 29 H 0.265 0.735 30 H 0.193 0.807 31 H 0.123 0.877 32 H 0.248 0.752 33 H -0.210 1.210 34 H -0.181 1.181 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.974 0.685 3.911 4.961 hybrid contribution -0.601 -0.790 -1.796 2.052 sum 2.374 -0.105 2.115 3.181 Atomic orbital electron populations 1.23511 0.75173 1.05553 1.02373 1.86509 1.24653 1.33203 1.83559 1.24381 0.93051 0.80969 0.70950 1.90672 1.68160 1.37423 1.46713 1.21259 0.85024 0.99918 1.03185 0.84690 1.21412 0.95516 1.01474 0.95496 1.21858 0.94419 0.96585 1.03000 1.21042 0.77889 0.95996 0.99717 0.91090 1.44157 1.06089 1.78474 1.03217 1.23927 0.93520 0.96998 0.90880 1.66474 1.38337 1.28039 0.97397 1.21418 0.88004 0.97134 0.98376 1.24602 0.98413 1.21158 0.95347 1.23931 1.03973 0.89146 0.96753 1.86566 1.55612 1.37716 1.56768 0.94474 0.74621 0.87572 0.81193 1.83772 1.03198 1.73301 1.03366 1.21761 0.94050 1.02117 0.97353 1.21353 0.95449 0.93109 1.03595 0.91969 0.92275 0.85374 0.89738 0.92234 0.89759 0.92592 0.73471 0.80677 0.87716 0.75215 1.20992 1.18132 0.89735 0.88603 0.90251 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.19 16 2 O -0.36 -1.16 10.47 -51.40 -0.54 -1.69 16 3 C 0.46 2.02 7.26 71.24 0.52 2.54 16 4 O -0.54 -5.86 15.73 21.96 0.35 -5.52 16 5 C -0.08 0.17 2.63 -11.54 -0.03 0.14 16 6 H 0.14 -0.91 8.14 -2.39 -0.02 -0.93 16 7 C -0.10 0.19 5.13 30.59 0.16 0.34 16 8 C -0.12 0.26 5.51 30.60 0.17 0.43 16 9 C 0.16 -0.37 2.58 44.99 0.12 -0.26 16 10 H 0.07 0.20 7.77 -2.39 -0.02 0.18 16 11 N -0.68 1.60 5.23 -330.40 -1.73 -0.13 16 12 C 0.32 1.05 8.06 179.32 1.45 2.50 16 13 N -0.58 -4.43 9.91 -202.03 -2.00 -6.43 16 14 C 0.10 0.65 11.22 83.54 0.94 1.59 16 15 C -0.27 -1.09 5.78 24.57 0.14 -0.95 16 16 C -0.03 0.00 2.98 71.24 0.21 0.21 16 17 O -0.56 -1.33 12.84 -148.98 -1.91 -3.24 16 18 Si 0.72 -0.84 31.05 68.60 2.13 1.29 16 19 S 0.11 0.16 20.57 -56.49 -1.16 -1.01 16 20 C -0.11 0.73 5.40 30.61 0.17 0.90 16 21 C -0.10 0.23 4.50 30.61 0.14 0.37 16 22 H 0.06 0.00 8.13 -2.38 -0.02 -0.02 16 23 H 0.06 0.04 8.13 -2.39 -0.02 0.02 16 24 H 0.13 -0.77 8.14 -2.39 -0.02 -0.79 16 25 H 0.08 -0.18 8.11 -2.39 -0.02 -0.20 16 26 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 27 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 28 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.43 -3.27 8.73 -92.70 -0.81 -4.08 16 30 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 31 H 0.11 -0.46 7.96 -2.39 -0.02 -0.48 16 32 H 0.40 -2.47 8.74 -74.06 -0.65 -3.12 16 33 H -0.28 -1.73 7.11 99.48 0.71 -1.02 16 34 H -0.26 -0.31 7.11 99.48 0.71 0.40 16 35 H 0.08 -0.56 8.14 -2.39 -0.02 -0.58 16 36 H 0.10 -0.98 8.14 -2.39 -0.02 -1.00 16 37 H 0.08 -0.14 8.10 -2.39 -0.02 -0.16 16 38 H 0.06 0.08 8.10 -2.39 -0.02 0.06 16 Total: 0.00 -18.93 330.44 -0.04 -18.97 By element: Atomic # 1 Polarization: -10.90 SS G_CDS: -0.34 Total: -11.24 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 5.16 Total: 8.99 kcal Atomic # 7 Polarization: -2.83 SS G_CDS: -3.73 Total: -6.56 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -2.11 Total: -10.45 kcal Atomic # 14 Polarization: -0.84 SS G_CDS: 2.13 Total: 1.29 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -1.16 Total: -1.01 kcal Total: -18.93 -0.04 -18.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14475162_15704118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.261 kcal (2) G-P(sol) polarization free energy of solvation -18.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds