Wall clock time and date at job start Mon Mar 8 2021 04:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.46961 * 2 1 4 4 C 1.52997 * 109.47317 * 120.00461 * 2 1 3 5 5 H 1.09002 * 109.47153 * 299.99641 * 4 2 1 6 6 C 1.53000 * 109.47060 * 59.99960 * 4 2 1 7 7 C 1.53001 * 109.46886 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.46963 * 299.99499 * 7 6 4 9 9 H 1.09002 * 109.47067 * 300.00341 * 8 7 6 10 10 N 1.46496 * 109.47313 * 180.02562 * 8 7 6 11 11 C 1.38401 * 120.00186 * 85.00075 * 10 8 7 12 12 N 1.32495 * 119.21796 * 359.73059 * 11 10 8 13 13 C 1.32279 * 120.73847 * 179.72022 * 12 11 10 14 14 C 1.38600 * 119.19802 * 0.54072 * 13 12 11 15 15 C 1.50703 * 120.71795 * 179.75265 * 14 13 12 16 16 O 1.42906 * 109.46964 * 244.97840 * 15 14 13 17 17 Si 1.86290 * 109.47285 * 4.98214 * 15 14 13 18 18 C 1.38606 * 118.55896 * 359.73592 * 14 13 12 19 19 N 1.32271 * 119.19729 * 359.97438 * 18 14 13 20 20 C 1.52997 * 109.47092 * 60.00194 * 8 7 6 21 21 C 1.53002 * 109.46817 * 179.97438 * 4 2 1 22 22 H 1.09000 * 109.47486 * 59.99547 * 1 2 3 23 23 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46716 * 299.99630 * 1 2 3 25 25 H 1.09002 * 109.46716 * 240.00370 * 2 1 3 26 26 H 1.09001 * 109.47066 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47747 * 300.00196 * 3 2 1 28 28 H 1.09002 * 109.47103 * 60.00608 * 3 2 1 29 29 H 1.09001 * 109.47194 * 299.99650 * 6 4 2 30 30 H 1.08992 * 109.47399 * 59.99823 * 6 4 2 31 31 H 1.09000 * 109.47437 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.47508 * 59.99571 * 7 6 4 33 33 H 0.97007 * 119.99693 * 264.99991 * 10 8 7 34 34 H 1.08000 * 120.39970 * 180.30397 * 13 12 11 35 35 H 1.09004 * 109.46754 * 124.98395 * 15 14 13 36 36 H 0.96695 * 113.99937 * 60.00551 * 16 15 14 37 37 H 1.48507 * 110.00150 * 179.97438 * 17 15 14 38 38 H 1.48502 * 110.00117 * 301.31512 * 17 15 14 39 39 H 1.08003 * 120.40021 * 179.97438 * 18 14 13 40 40 H 1.09001 * 109.47375 * 180.02562 * 20 8 7 41 41 H 1.09002 * 109.47497 * 59.99850 * 20 8 7 42 42 H 1.09002 * 109.47075 * 299.99262 * 21 4 2 43 43 H 1.08996 * 109.47407 * 60.00219 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6768 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2490 7 6 2.0396 -2.8850 2.4985 8 6 3.5696 -2.8850 2.4990 9 1 3.9332 -3.3989 1.6092 10 7 4.0576 -3.5760 3.6951 11 6 4.1898 -4.9537 3.6929 12 7 3.8654 -5.6328 2.6024 13 6 3.9852 -6.9496 2.5654 14 6 4.4455 -7.6185 3.6886 15 6 4.5898 -9.1186 3.6860 16 8 3.6763 -9.6867 4.6268 17 14 4.2163 -9.7755 1.9832 18 6 4.7704 -6.8778 4.8142 19 7 4.6329 -5.5626 4.7830 20 6 4.0796 -1.4425 2.4991 21 6 3.5701 -0.7218 1.2487 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8901 26 1 3.1299 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6767 1.9562 0.8901 29 1 0.4400 -2.1639 1.2491 30 1 1.8933 -2.6776 0.3591 31 1 1.6767 -3.9128 2.4983 32 1 1.6760 -2.3710 3.3884 33 1 4.2880 -3.0679 4.4886 34 1 3.7239 -7.4972 1.6719 35 1 5.6096 -9.3859 3.9630 36 1 2.7479 -9.4891 4.4420 37 1 4.3557 -11.2539 1.9672 38 1 2.8396 -9.3904 1.5810 39 1 5.1314 -7.3686 5.7060 40 1 5.1696 -1.4425 2.4989 41 1 3.7160 -0.9285 3.3889 42 1 3.9330 -1.2360 0.3587 43 1 3.9338 0.3057 1.2486 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14589128_12175864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:37:53 Heat of formation + Delta-G solvation = 10.333090 kcal Electronic energy + Delta-G solvation = -22002.513164 eV Core-core repulsion = 18855.750083 eV Total energy + Delta-G solvation = -3146.763082 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.13488 -40.34661 -38.26996 -37.19695 -34.85193 -34.60187 -32.32793 -31.88456 -29.33907 -28.00482 -26.50212 -25.86781 -23.87313 -23.40761 -22.85803 -21.16353 -20.64165 -19.34831 -18.73022 -18.14378 -16.89390 -16.58869 -16.14097 -15.99449 -15.83039 -15.61162 -15.16919 -15.14644 -14.64780 -14.56955 -14.39561 -14.16941 -14.01296 -13.37700 -13.20765 -13.08891 -12.78381 -12.65863 -12.34375 -12.25245 -12.08996 -12.03268 -11.90952 -11.74674 -11.67386 -11.41728 -11.28241 -11.01050 -10.76329 -10.68759 -10.05023 -9.10568 -4.91307 0.04707 0.13815 1.31538 1.59666 1.82232 1.97252 2.78277 3.15940 3.42812 3.61299 3.67681 3.68422 3.73229 3.76498 3.86618 4.05195 4.13901 4.21742 4.33269 4.35118 4.40114 4.53193 4.55746 4.64294 4.66278 4.69142 4.75240 4.83255 4.85475 5.00610 5.02789 5.04766 5.10766 5.14114 5.21389 5.22394 5.28805 5.30809 5.38730 5.43990 5.56700 5.64524 5.78451 6.04564 6.40905 6.48361 7.27252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.150 4.150 4 C -0.078 4.078 5 H 0.068 0.932 6 C -0.108 4.108 7 C -0.120 4.120 8 C 0.166 3.834 9 H 0.081 0.919 10 N -0.690 5.690 11 C 0.553 3.447 12 N -0.575 5.575 13 C 0.191 3.809 14 C -0.285 4.285 15 C -0.056 4.056 16 O -0.547 6.547 17 Si 0.759 3.241 18 C 0.213 3.787 19 N -0.592 5.592 20 C -0.121 4.121 21 C -0.108 4.108 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.416 0.584 34 H 0.185 0.815 35 H 0.132 0.868 36 H 0.385 0.615 37 H -0.299 1.299 38 H -0.279 1.279 39 H 0.183 0.817 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.996 1.945 -2.649 3.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.109 4.109 3 C -0.207 4.207 4 C -0.097 4.097 5 H 0.087 0.913 6 C -0.146 4.146 7 C -0.159 4.159 8 C 0.061 3.939 9 H 0.099 0.901 10 N -0.325 5.325 11 C 0.196 3.804 12 N -0.298 5.298 13 C 0.024 3.976 14 C -0.293 4.293 15 C -0.167 4.167 16 O -0.355 6.355 17 Si 0.664 3.336 18 C 0.045 3.955 19 N -0.315 5.315 20 C -0.159 4.159 21 C -0.146 4.146 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.254 0.746 34 H 0.202 0.798 35 H 0.149 0.851 36 H 0.234 0.766 37 H -0.226 1.226 38 H -0.206 1.206 39 H 0.200 0.800 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.870 2.370 -3.028 3.943 hybrid contribution -0.922 -0.806 1.241 1.743 sum -0.051 1.564 -1.787 2.376 Atomic orbital electron populations 1.21912 0.95487 1.01834 1.01618 1.21113 0.95563 0.96241 0.97950 1.21905 1.01463 0.95750 1.01630 1.21194 0.95261 0.95157 0.98065 0.91345 1.21557 1.00639 0.95158 0.97199 1.21850 0.95242 0.99984 0.98872 1.21003 0.93462 0.92589 0.86808 0.90081 1.44425 1.69692 1.00522 1.17861 1.19663 0.87469 0.87968 0.85251 1.67987 1.24427 1.09612 1.27754 1.23216 0.88022 0.88887 0.97476 1.21673 1.11051 0.99167 0.97424 1.24859 0.97834 0.88798 1.05177 1.86588 1.20684 1.76284 1.51922 0.94239 0.83767 0.78412 0.77181 1.23157 0.87380 0.87181 0.97762 1.68009 1.22602 1.12761 1.28081 1.21783 1.01072 0.93187 0.99845 1.21580 0.94937 1.00965 0.97123 0.92867 0.92391 0.92925 0.91316 0.91906 0.92960 0.92858 0.91475 0.91799 0.93378 0.92230 0.74610 0.79849 0.85066 0.76612 1.22628 1.20600 0.80044 0.91033 0.90842 0.91600 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.27 8.84 71.98 0.64 0.90 16 2 C -0.09 0.22 2.50 -10.80 -0.03 0.20 16 3 C -0.15 0.40 8.84 71.98 0.64 1.04 16 4 C -0.08 0.22 1.78 -10.79 -0.02 0.21 16 5 H 0.07 -0.14 8.14 -2.39 -0.02 -0.15 16 6 C -0.11 0.15 4.85 30.59 0.15 0.30 16 7 C -0.12 -0.07 5.51 30.60 0.17 0.10 16 8 C 0.17 0.01 2.44 44.99 0.11 0.12 16 9 H 0.08 0.22 7.51 -2.39 -0.02 0.20 16 10 N -0.69 -1.67 5.22 -330.44 -1.73 -3.39 16 11 C 0.55 3.47 8.40 261.49 2.20 5.67 16 12 N -0.58 -3.09 9.21 -197.99 -1.82 -4.92 16 13 C 0.19 0.20 9.92 84.71 0.84 1.04 16 14 C -0.28 0.00 5.36 -19.69 -0.11 -0.10 16 15 C -0.06 0.15 2.83 71.24 0.20 0.35 16 16 O -0.55 -0.33 12.85 -148.98 -1.91 -2.25 16 17 Si 0.76 -2.84 29.95 68.60 2.05 -0.79 16 18 C 0.21 0.58 10.99 84.71 0.93 1.51 16 19 N -0.59 -3.99 10.46 -197.99 -2.07 -6.06 16 20 C -0.12 0.39 5.39 30.61 0.17 0.56 16 21 C -0.11 0.41 4.85 30.61 0.15 0.56 16 22 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 23 H 0.06 -0.10 6.43 -2.39 -0.02 -0.11 16 24 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 25 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 26 H 0.06 -0.22 6.43 -2.39 -0.02 -0.24 16 27 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 28 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 29 H 0.07 -0.07 6.43 -2.39 -0.02 -0.09 16 30 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 31 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.42 0.17 8.72 -92.70 -0.81 -0.64 16 34 H 0.19 -0.73 5.01 -2.91 -0.01 -0.75 16 35 H 0.13 -0.65 7.96 -2.38 -0.02 -0.67 16 36 H 0.38 -1.65 8.70 -74.06 -0.64 -2.29 16 37 H -0.30 -1.21 7.11 99.48 0.71 -0.51 16 38 H -0.28 0.03 7.02 99.48 0.70 0.73 16 39 H 0.18 -0.20 8.06 -2.91 -0.02 -0.22 16 40 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 41 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 42 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 43 H 0.08 -0.36 6.43 -2.39 -0.02 -0.37 16 Total: 0.00 -11.42 333.71 0.14 -11.29 By element: Atomic # 1 Polarization: -5.91 SS G_CDS: -0.42 Total: -6.33 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 6.03 Total: 12.44 kcal Atomic # 7 Polarization: -8.75 SS G_CDS: -5.62 Total: -14.37 kcal Atomic # 8 Polarization: -0.33 SS G_CDS: -1.91 Total: -2.25 kcal Atomic # 14 Polarization: -2.84 SS G_CDS: 2.05 Total: -0.79 kcal Total: -11.42 0.14 -11.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14589128_12175864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.620 kcal (2) G-P(sol) polarization free energy of solvation -11.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds