Wall clock time and date at job start Mon Mar 8 2021 04:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47143 * 120.00325 * 2 1 3 5 5 H 1.08996 * 109.46952 * 299.99863 * 4 2 1 6 6 C 1.52996 * 109.47131 * 60.00169 * 4 2 1 7 7 C 1.52997 * 109.47131 * 179.97438 * 6 4 2 8 8 C 1.52999 * 109.46991 * 299.99311 * 7 6 4 9 9 H 1.08993 * 109.47839 * 300.00447 * 8 7 6 10 10 N 1.46504 * 109.47050 * 179.97438 * 8 7 6 11 11 C 1.39004 * 119.99474 * 85.00529 * 10 8 7 12 12 N 1.32400 * 119.70199 * 179.72634 * 11 10 8 13 13 C 1.31974 * 121.61841 * 179.71079 * 12 11 10 14 14 C 1.38027 * 120.85607 * 0.56359 * 13 12 11 15 15 C 1.50700 * 120.33239 * 179.69729 * 14 13 12 16 16 O 1.42897 * 109.47661 * 245.02562 * 15 14 13 17 17 Si 1.86305 * 109.47412 * 5.02992 * 15 14 13 18 18 C 1.38878 * 119.32914 * 359.72833 * 14 13 12 19 19 C 1.38300 * 118.50818 * 359.97438 * 18 14 13 20 20 C 1.53006 * 109.46626 * 60.00378 * 8 7 6 21 21 C 1.52997 * 109.47127 * 299.99539 * 20 8 7 22 22 H 1.09004 * 109.46930 * 299.99609 * 1 2 3 23 23 H 1.09004 * 109.47059 * 59.99211 * 1 2 3 24 24 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46497 * 240.00555 * 2 1 3 26 26 H 1.09001 * 109.46479 * 60.00410 * 3 2 1 27 27 H 1.08998 * 109.46501 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47376 * 300.00295 * 3 2 1 29 29 H 1.09001 * 109.46993 * 300.00131 * 6 4 2 30 30 H 1.09000 * 109.47380 * 59.99237 * 6 4 2 31 31 H 1.09002 * 109.47153 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47194 * 60.00154 * 7 6 4 33 33 H 0.96998 * 120.00034 * 265.00623 * 10 8 7 34 34 H 1.08000 * 119.57314 * 180.28917 * 13 12 11 35 35 H 1.09001 * 109.46853 * 125.02523 * 15 14 13 36 36 H 0.96694 * 113.99744 * 59.99766 * 16 15 14 37 37 H 1.48502 * 109.99602 * 58.67686 * 17 15 14 38 38 H 1.48490 * 110.00107 * 179.97438 * 17 15 14 39 39 H 1.08003 * 120.74395 * 179.97438 * 18 14 13 40 40 H 1.08002 * 120.45088 * 179.97438 * 19 18 14 41 41 H 1.09001 * 109.46801 * 59.99811 * 20 8 7 42 42 H 1.09001 * 109.46998 * 179.97438 * 20 8 7 43 43 H 1.09002 * 109.47153 * 180.02562 * 21 20 8 44 44 H 1.08996 * 109.46952 * 300.00302 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1391 6 6 1.5301 -2.1638 1.2491 7 6 2.0406 -2.8853 2.4979 8 6 3.5706 -2.8854 2.4972 9 1 3.9336 -3.3989 1.6070 10 7 4.0594 -3.5757 3.6933 11 6 4.1922 -4.9594 3.6916 12 7 4.6397 -5.5768 4.7740 13 6 4.7751 -6.8889 4.8159 14 6 4.4632 -7.6681 3.7201 15 6 4.6287 -9.1649 3.7786 16 8 5.6422 -9.5686 2.8558 17 14 5.1229 -9.6681 5.5030 18 6 3.9959 -7.0588 2.5629 19 6 3.8586 -5.6827 2.5508 20 6 4.0806 -1.4428 2.4973 21 6 3.5700 -0.7213 1.2484 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8932 -0.5138 -0.8901 26 1 1.6767 1.9563 0.8901 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9565 -0.8899 29 1 0.4401 -2.1638 1.2490 30 1 1.8933 -2.6775 0.3590 31 1 1.6769 -3.9128 2.4981 32 1 1.6776 -2.3717 3.3881 33 1 4.2905 -3.0672 4.4864 34 1 5.1388 -7.3587 5.7178 35 1 3.6861 -9.6452 3.5161 36 1 6.5099 -9.1786 3.0291 37 1 4.0920 -9.2259 6.4762 38 1 5.2887 -11.1420 5.5741 39 1 3.7454 -7.6464 1.6920 40 1 3.4983 -5.1763 1.6675 41 1 3.7176 -0.9292 3.3876 42 1 5.1706 -1.4428 2.4972 43 1 3.9337 0.3062 1.2483 44 1 3.9330 -1.2350 0.3582 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14589128_13915762.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:37:55 Heat of formation + Delta-G solvation = -8.136774 kcal Electronic energy + Delta-G solvation = -21822.158870 eV Core-core repulsion = 18740.020786 eV Total energy + Delta-G solvation = -3082.138084 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.52540 -40.27239 -38.08369 -37.04971 -34.58893 -33.38076 -31.97092 -31.48687 -29.17877 -28.01844 -26.23533 -24.90987 -23.79222 -23.32168 -22.36944 -21.06060 -20.64375 -18.66443 -18.46894 -17.66199 -16.65654 -16.50766 -16.07020 -15.94673 -15.49900 -15.28109 -15.15954 -15.04751 -14.46241 -14.40958 -14.34010 -14.11984 -14.02255 -13.45215 -13.36153 -13.09930 -12.77407 -12.65276 -12.40774 -12.28541 -12.13827 -12.06438 -12.02642 -11.65103 -11.36184 -11.27351 -11.02196 -10.80063 -10.69056 -10.43373 -10.37894 -8.69087 -4.99412 0.22498 0.39376 1.34012 1.64197 1.97153 2.09877 2.82886 3.54200 3.60444 3.66775 3.69170 3.78418 3.79843 3.97165 4.04619 4.08983 4.11097 4.23832 4.33165 4.37130 4.39399 4.51868 4.54735 4.54886 4.63174 4.67867 4.74439 4.81696 4.83233 4.96696 5.01771 5.02377 5.05198 5.10240 5.14244 5.20198 5.21526 5.28562 5.31171 5.38007 5.40855 5.54656 5.56593 5.63515 6.03927 6.55281 6.79870 7.14348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.090 4.090 3 C -0.151 4.151 4 C -0.079 4.079 5 H 0.066 0.934 6 C -0.110 4.110 7 C -0.129 4.129 8 C 0.158 3.842 9 H 0.083 0.917 10 N -0.717 5.717 11 C 0.397 3.603 12 N -0.565 5.565 13 C 0.148 3.852 14 C -0.239 4.239 15 C -0.054 4.054 16 O -0.556 6.556 17 Si 0.766 3.234 18 C -0.013 4.013 19 C -0.243 4.243 20 C -0.120 4.120 21 C -0.109 4.109 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.405 0.595 34 H 0.169 0.831 35 H 0.107 0.893 36 H 0.394 0.606 37 H -0.288 1.288 38 H -0.296 1.296 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.198 3.318 -1.763 3.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.109 4.109 3 C -0.208 4.208 4 C -0.098 4.098 5 H 0.084 0.916 6 C -0.148 4.148 7 C -0.168 4.168 8 C 0.053 3.947 9 H 0.101 0.899 10 N -0.347 5.347 11 C 0.161 3.839 12 N -0.283 5.283 13 C -0.009 4.009 14 C -0.244 4.244 15 C -0.165 4.165 16 O -0.364 6.364 17 Si 0.672 3.328 18 C -0.038 4.038 19 C -0.268 4.268 20 C -0.158 4.158 21 C -0.147 4.147 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.241 0.759 34 H 0.186 0.814 35 H 0.124 0.876 36 H 0.244 0.756 37 H -0.216 1.216 38 H -0.224 1.224 39 H 0.162 0.838 40 H 0.163 0.837 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.655 3.130 -0.766 3.288 hybrid contribution -0.811 -0.243 -0.663 1.075 sum -0.156 2.887 -1.429 3.224 Atomic orbital electron populations 1.21915 0.95507 1.01900 1.01557 1.21121 0.95538 0.96184 0.98032 1.21913 1.01451 0.95882 1.01571 1.21195 0.95259 0.95382 0.97939 0.91555 1.21590 1.00826 0.95092 0.97309 1.21972 0.95218 1.00551 0.99030 1.21095 0.93439 0.93116 0.87034 0.89856 1.44743 1.70872 1.01845 1.17282 1.18643 0.89595 0.86223 0.89430 1.67161 1.21344 1.11994 1.27813 1.22463 0.93237 0.87931 0.97290 1.21036 1.09449 0.97570 0.96358 1.24845 0.94361 0.91491 1.05788 1.86453 1.22269 1.72329 1.55371 0.93883 0.87638 0.78337 0.72924 1.21394 0.91216 0.93751 0.97469 1.21636 1.10715 0.94894 0.99539 1.21738 1.01060 0.93325 0.99665 1.21581 0.94913 1.00980 0.97238 0.93016 0.92956 0.92234 0.91193 0.92968 0.91923 0.93002 0.91373 0.91388 0.92523 0.92123 0.75899 0.81403 0.87605 0.75627 1.21550 1.22362 0.83831 0.83698 0.91180 0.91045 0.90630 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.40 8.84 71.98 0.64 1.03 16 2 C -0.09 0.32 2.50 -10.79 -0.03 0.29 16 3 C -0.15 0.48 8.84 71.98 0.64 1.12 16 4 C -0.08 0.34 1.78 -10.79 -0.02 0.32 16 5 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 6 C -0.11 0.44 4.85 30.59 0.15 0.59 16 7 C -0.13 0.32 5.42 30.59 0.17 0.48 16 8 C 0.16 -0.47 2.14 44.99 0.10 -0.38 16 9 H 0.08 -0.25 6.45 -2.39 -0.02 -0.27 16 10 N -0.72 -0.34 5.25 -324.53 -1.70 -2.04 16 11 C 0.40 1.72 7.63 133.06 1.02 2.74 16 12 N -0.57 -3.68 10.39 -193.26 -2.01 -5.69 16 13 C 0.15 0.46 9.84 84.62 0.83 1.29 16 14 C -0.24 -0.46 5.36 -19.76 -0.11 -0.56 16 15 C -0.05 -0.01 2.82 71.24 0.20 0.19 16 16 O -0.56 -0.36 12.84 -148.98 -1.91 -2.27 16 17 Si 0.77 -0.83 29.83 68.60 2.05 1.22 16 18 C -0.01 -0.03 9.83 22.44 0.22 0.19 16 19 C -0.24 -0.54 8.83 22.50 0.20 -0.34 16 20 C -0.12 0.56 5.39 30.60 0.16 0.73 16 21 C -0.11 0.57 4.85 30.59 0.15 0.72 16 22 H 0.05 -0.10 8.14 -2.38 -0.02 -0.12 16 23 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 24 H 0.06 -0.17 6.43 -2.39 -0.02 -0.19 16 25 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 26 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 27 H 0.06 -0.25 6.43 -2.39 -0.02 -0.27 16 28 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 29 H 0.07 -0.22 6.43 -2.39 -0.02 -0.24 16 30 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 31 H 0.06 -0.02 7.66 -2.39 -0.02 -0.03 16 32 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.41 -0.03 8.73 -92.71 -0.81 -0.84 16 34 H 0.17 -0.25 4.91 -2.91 -0.01 -0.26 16 35 H 0.11 0.12 7.96 -2.39 -0.02 0.10 16 36 H 0.39 -2.76 8.70 -74.06 -0.64 -3.40 16 37 H -0.29 -1.23 7.11 99.48 0.71 -0.52 16 38 H -0.30 -1.77 7.11 99.48 0.71 -1.07 16 39 H 0.14 -0.06 8.06 -2.91 -0.02 -0.08 16 40 H 0.15 -0.15 6.08 -2.91 -0.02 -0.17 16 41 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 42 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 43 H 0.08 -0.40 6.43 -2.39 -0.02 -0.42 16 44 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 Total: 0.00 -10.77 335.27 0.31 -10.46 By element: Atomic # 1 Polarization: -9.66 SS G_CDS: -0.42 Total: -10.08 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 4.31 Total: 8.41 kcal Atomic # 7 Polarization: -4.02 SS G_CDS: -3.71 Total: -7.73 kcal Atomic # 8 Polarization: -0.36 SS G_CDS: -1.91 Total: -2.27 kcal Atomic # 14 Polarization: -0.83 SS G_CDS: 2.05 Total: 1.22 kcal Total: -10.77 0.31 -10.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14589128_13915762.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.323 kcal (2) G-P(sol) polarization free energy of solvation -10.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds