Wall clock time and date at job start Mon Mar 8 2021 04:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47473 * 2 1 4 4 C 1.52997 * 109.47024 * 119.99974 * 2 1 3 5 5 H 1.09000 * 109.47140 * 300.00108 * 4 2 1 6 6 C 1.53006 * 109.47164 * 60.00057 * 4 2 1 7 7 C 1.52997 * 109.47164 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47415 * 300.00027 * 7 6 4 9 9 H 1.08996 * 109.46550 * 300.00288 * 8 7 6 10 10 N 1.46500 * 109.47089 * 179.97438 * 8 7 6 11 11 C 1.38615 * 119.99552 * 154.99663 * 10 8 7 12 12 N 1.29687 * 124.94782 * 0.02740 * 11 10 8 13 13 C 1.32122 * 116.86134 * 179.97438 * 12 11 10 14 14 C 1.33327 * 114.58179 * 0.02562 * 13 12 11 15 15 C 1.50696 * 125.95221 * 180.02562 * 14 13 12 16 16 O 1.42901 * 109.47045 * 299.99807 * 15 14 13 17 17 Si 1.86300 * 109.47361 * 179.97438 * 15 14 13 18 18 S 1.70969 * 124.94664 * 179.72189 * 11 10 8 19 19 C 1.52996 * 109.46972 * 59.99860 * 8 7 6 20 20 C 1.52997 * 109.47165 * 300.00293 * 19 8 7 21 21 H 1.09004 * 109.46862 * 59.99962 * 1 2 3 22 22 H 1.09002 * 109.47722 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47250 * 299.99985 * 1 2 3 24 24 H 1.09000 * 109.47250 * 240.00015 * 2 1 3 25 25 H 1.09001 * 109.47372 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.47261 * 300.00171 * 3 2 1 27 27 H 1.09004 * 109.47368 * 59.99787 * 3 2 1 28 28 H 1.09001 * 109.46998 * 299.99705 * 6 4 2 29 29 H 1.09000 * 109.47050 * 59.99996 * 6 4 2 30 30 H 1.09000 * 109.47140 * 60.00051 * 7 6 4 31 31 H 1.09001 * 109.47230 * 179.97438 * 7 6 4 32 32 H 0.96992 * 120.00233 * 335.00422 * 10 8 7 33 33 H 1.07996 * 122.71072 * 179.97438 * 13 12 11 34 34 H 1.08996 * 109.47392 * 59.99656 * 15 14 13 35 35 H 0.96700 * 114.00055 * 299.99970 * 16 15 14 36 36 H 1.48506 * 109.99930 * 58.67870 * 17 15 14 37 37 H 1.48498 * 110.00613 * 179.97438 * 17 15 14 38 38 H 1.09000 * 109.47054 * 60.00300 * 19 8 7 39 39 H 1.09001 * 109.46997 * 180.02562 * 19 8 7 40 40 H 1.09000 * 109.47140 * 299.99954 * 20 19 8 41 41 H 1.09002 * 109.47045 * 180.02562 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6765 -0.2074 2.1392 6 6 1.5299 -2.1638 1.2492 7 6 2.0404 -2.8852 2.4981 8 6 3.5704 -2.8852 2.4976 9 1 3.9333 -3.3989 1.6074 10 7 4.0591 -3.5755 3.6938 11 6 5.3159 -4.1603 3.6916 12 7 6.1365 -4.1539 2.6873 13 6 7.2969 -4.7612 2.8608 14 6 7.4633 -5.3057 4.0664 15 6 8.6825 -6.0553 4.5381 16 8 8.8952 -7.1937 3.7009 17 14 8.4253 -6.6159 6.2960 18 16 6.0129 -4.9888 5.0147 19 6 4.0804 -1.4428 2.4976 20 6 3.5699 -0.7214 1.2487 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9564 0.8900 28 1 0.4399 -2.1638 1.2493 29 1 1.8932 -2.6776 0.3592 30 1 1.6774 -2.3715 3.3883 31 1 1.6767 -3.9128 2.4984 32 1 3.5033 -3.6234 4.4872 33 1 8.0496 -4.8132 2.0881 34 1 9.5528 -5.4009 4.4895 35 1 8.1592 -7.8208 3.6952 36 1 7.2229 -7.4832 6.3818 37 1 9.6205 -7.3571 6.7729 38 1 3.7174 -0.9291 3.3878 39 1 5.1704 -1.4428 2.4967 40 1 3.9329 -1.2351 0.3585 41 1 3.9336 0.3062 1.2485 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14589128_15704118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:37:58 Heat of formation + Delta-G solvation = -0.435368 kcal Electronic energy + Delta-G solvation = -20365.031397 eV Core-core repulsion = 17372.379517 eV Total energy + Delta-G solvation = -2992.651880 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.97653 -40.11789 -38.13691 -37.11811 -34.47814 -31.92251 -31.42458 -29.46931 -28.00917 -26.55903 -24.84044 -23.56334 -23.38407 -21.42758 -20.80042 -20.50368 -19.60305 -18.26176 -17.20962 -16.70804 -16.43355 -16.12772 -15.89166 -15.52318 -15.19482 -15.11960 -14.97803 -14.55496 -14.42661 -14.18824 -13.94143 -13.37692 -13.08773 -12.97821 -12.75965 -12.66698 -12.46414 -12.32936 -12.09603 -12.02863 -12.02578 -11.66356 -11.38839 -11.28292 -11.06926 -10.90020 -10.71720 -10.27104 -10.19869 -8.72101 -5.04209 -0.05265 0.03273 0.67218 1.25299 1.54544 1.88037 1.97483 2.19325 3.37991 3.60380 3.67312 3.72170 3.81693 3.92213 4.05143 4.12952 4.31832 4.34149 4.39957 4.52244 4.56033 4.57900 4.65998 4.68215 4.70896 4.82615 4.82931 4.95366 5.01887 5.03572 5.10476 5.12141 5.17894 5.20647 5.23578 5.30519 5.38218 5.41938 5.55824 5.63591 5.87326 6.18225 6.43199 7.03003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.077 4.077 5 H 0.074 0.926 6 C -0.110 4.110 7 C -0.120 4.120 8 C 0.165 3.835 9 H 0.067 0.933 10 N -0.683 5.683 11 C 0.317 3.683 12 N -0.578 5.578 13 C 0.104 3.896 14 C -0.307 4.307 15 C -0.022 4.022 16 O -0.542 6.542 17 Si 0.724 3.276 18 S 0.111 5.889 19 C -0.120 4.120 20 C -0.109 4.109 21 H 0.050 0.950 22 H 0.061 0.939 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.423 0.577 33 H 0.176 0.824 34 H 0.134 0.866 35 H 0.386 0.614 36 H -0.267 1.267 37 H -0.275 1.275 38 H 0.068 0.932 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.742 2.224 2.747 5.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.110 4.110 3 C -0.208 4.208 4 C -0.096 4.096 5 H 0.092 0.908 6 C -0.148 4.148 7 C -0.158 4.158 8 C 0.059 3.941 9 H 0.086 0.914 10 N -0.322 5.322 11 C -0.054 4.054 12 N -0.304 5.304 13 C -0.047 4.047 14 C -0.430 4.430 15 C -0.135 4.135 16 O -0.351 6.351 17 Si 0.627 3.373 18 S 0.361 5.639 19 C -0.160 4.160 20 C -0.147 4.147 21 H 0.069 0.931 22 H 0.080 0.920 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.262 0.738 33 H 0.193 0.807 34 H 0.152 0.848 35 H 0.235 0.765 36 H -0.192 1.192 37 H -0.200 1.200 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.796 1.954 3.566 5.563 hybrid contribution 0.297 -0.824 -1.424 1.671 sum -3.500 1.130 2.143 4.256 Atomic orbital electron populations 1.21899 0.94966 1.02081 1.01728 1.21121 0.95924 0.96059 0.97906 1.21906 1.01156 0.96022 1.01722 1.21191 0.94524 0.95677 0.98171 0.90778 1.21579 1.01253 0.94796 0.97154 1.21774 0.92404 1.01680 0.99948 1.20990 0.94348 0.91953 0.86833 0.91432 1.44266 1.12059 1.58115 1.17766 1.23979 0.92053 0.95937 0.93389 1.66488 1.05272 1.28502 1.30178 1.21433 0.93316 0.93461 0.96515 1.25611 1.02086 1.16514 0.98779 1.24273 0.95996 0.88569 1.04641 1.86585 1.46615 1.34277 1.67574 0.94392 0.79059 0.87616 0.76240 1.83810 1.10750 1.53765 1.15611 1.21846 0.99952 0.95183 0.98979 1.21562 0.95550 1.00417 0.97182 0.93055 0.91995 0.92561 0.91809 0.92499 0.92958 0.92608 0.90213 0.92303 0.90071 0.90986 0.73781 0.80672 0.84847 0.76482 1.19238 1.20035 0.91285 0.93454 0.92665 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.40 8.84 71.98 0.64 1.04 16 2 C -0.09 0.19 2.50 -10.80 -0.03 0.17 16 3 C -0.15 0.24 8.84 71.98 0.64 0.88 16 4 C -0.08 0.23 1.78 -10.79 -0.02 0.21 16 5 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 6 C -0.11 0.42 4.85 30.60 0.15 0.56 16 7 C -0.12 0.54 5.39 30.59 0.16 0.70 16 8 C 0.17 -0.11 2.59 44.99 0.12 0.01 16 9 H 0.07 0.29 7.77 -2.39 -0.02 0.27 16 10 N -0.68 0.68 5.23 -330.40 -1.73 -1.04 16 11 C 0.32 1.07 8.06 179.32 1.45 2.52 16 12 N -0.58 -4.27 9.90 -202.02 -2.00 -6.27 16 13 C 0.10 0.55 11.22 83.54 0.94 1.49 16 14 C -0.31 -0.69 5.74 24.57 0.14 -0.55 16 15 C -0.02 -0.01 2.98 71.23 0.21 0.20 16 16 O -0.54 -1.65 12.87 -148.98 -1.92 -3.57 16 17 Si 0.72 -0.59 31.05 68.60 2.13 1.54 16 18 S 0.11 0.04 20.57 -56.49 -1.16 -1.13 16 19 C -0.12 0.01 5.51 30.59 0.17 0.18 16 20 C -0.11 0.11 4.85 30.59 0.15 0.26 16 21 H 0.05 -0.10 8.14 -2.38 -0.02 -0.12 16 22 H 0.06 -0.21 6.43 -2.39 -0.02 -0.23 16 23 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 24 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 25 H 0.06 -0.07 6.43 -2.39 -0.02 -0.09 16 26 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 27 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 28 H 0.08 -0.39 6.43 -2.39 -0.02 -0.40 16 29 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 30 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 31 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 32 H 0.42 -2.47 8.73 -92.71 -0.81 -3.28 16 33 H 0.18 0.65 8.06 -2.91 -0.02 0.62 16 34 H 0.13 -0.23 7.96 -2.39 -0.02 -0.25 16 35 H 0.39 -0.79 8.70 -74.06 -0.64 -1.44 16 36 H -0.27 -0.79 7.11 99.48 0.71 -0.08 16 37 H -0.27 -1.44 7.11 99.48 0.71 -0.74 16 38 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.07 -0.05 6.43 -2.39 -0.02 -0.07 16 Total: 0.00 -9.82 331.63 -0.36 -10.19 By element: Atomic # 1 Polarization: -6.99 SS G_CDS: -0.39 Total: -7.39 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 4.71 Total: 7.66 kcal Atomic # 7 Polarization: -3.58 SS G_CDS: -3.73 Total: -7.31 kcal Atomic # 8 Polarization: -1.65 SS G_CDS: -1.92 Total: -3.57 kcal Atomic # 14 Polarization: -0.59 SS G_CDS: 2.13 Total: 1.54 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -1.16 Total: -1.13 kcal Total: -9.82 -0.36 -10.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14589128_15704118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.752 kcal (2) G-P(sol) polarization free energy of solvation -9.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds