Wall clock time and date at job start Mon Mar 8 2021 04:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33323 * 125.95291 * 2 1 4 4 C 1.50701 * 122.70901 * 0.02562 * 3 2 1 5 5 O 1.42898 * 109.47108 * 44.28369 * 4 3 2 6 6 Si 1.86305 * 109.47161 * 164.28880 * 4 3 2 7 7 N 1.32121 * 114.58631 * 179.97438 * 3 2 1 8 8 C 1.29699 * 116.86002 * 359.97438 * 7 3 2 9 9 N 1.38614 * 124.94474 * 179.97438 * 8 7 3 10 10 C 1.46499 * 119.99429 * 179.72272 * 9 8 7 11 11 H 1.09004 * 109.47402 * 325.27698 * 10 9 8 12 12 C 1.53002 * 109.47108 * 85.28042 * 10 9 8 13 13 C 1.52990 * 109.47267 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47434 * 299.99910 * 13 12 10 15 15 H 1.08993 * 109.46559 * 300.00208 * 14 13 12 16 16 C 1.52995 * 109.47180 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.47222 * 60.00273 * 16 14 13 18 18 C 1.53004 * 109.47180 * 180.02562 * 16 14 13 19 19 C 1.53002 * 109.46820 * 59.99816 * 14 13 12 20 20 C 1.52998 * 109.46941 * 205.27885 * 10 9 8 21 21 S 1.70961 * 110.10182 * 0.24366 * 8 7 3 22 22 H 1.08998 * 109.46876 * 84.37291 * 1 2 3 23 23 H 1.09000 * 109.46871 * 204.36524 * 1 2 3 24 24 H 1.08993 * 109.47302 * 324.37466 * 1 2 3 25 25 H 1.08999 * 109.47224 * 284.28333 * 4 3 2 26 26 H 0.96704 * 113.99615 * 60.00501 * 5 4 3 27 27 H 1.48496 * 110.00227 * 58.67886 * 6 4 3 28 28 H 1.48503 * 109.99786 * 180.02562 * 6 4 3 29 29 H 0.97000 * 119.99795 * 0.02562 * 9 8 7 30 30 H 1.08997 * 109.46671 * 300.00066 * 12 10 9 31 31 H 1.09002 * 109.47033 * 59.99092 * 12 10 9 32 32 H 1.09002 * 109.47369 * 179.97438 * 13 12 10 33 33 H 1.09004 * 109.47014 * 59.99796 * 13 12 10 34 34 H 1.08999 * 109.47813 * 300.00417 * 16 14 13 35 35 H 1.09004 * 109.47270 * 59.99614 * 17 16 14 36 36 H 1.08994 * 109.47312 * 179.97438 * 17 16 14 37 37 H 1.09008 * 109.46972 * 299.99773 * 17 16 14 38 38 H 1.08994 * 109.47512 * 180.02562 * 18 16 14 39 39 H 1.09004 * 109.46927 * 300.00150 * 18 16 14 40 40 H 1.09002 * 109.46936 * 59.99831 * 18 16 14 41 41 H 1.08997 * 109.46671 * 179.97438 * 19 14 13 42 42 H 1.09004 * 109.47270 * 60.00333 * 19 14 13 43 43 H 1.09004 * 109.46919 * 300.00108 * 20 10 9 44 44 H 1.08997 * 109.47614 * 60.00171 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.6700 2.5754 0.9416 6 14 3.0905 3.6765 0.4760 7 7 3.5850 0.8189 0.0005 8 6 3.9315 -0.4310 0.0015 9 7 5.2385 -0.8926 0.0017 10 6 5.5066 -2.3328 0.0090 11 1 4.7437 -2.8415 0.5984 12 6 5.4807 -2.8637 -1.4258 13 6 5.7612 -4.3676 -1.4183 14 6 7.1382 -4.6266 -0.8035 15 1 7.9007 -4.1176 -1.3931 16 6 7.4184 -6.1306 -0.7955 17 6 7.3923 -6.6620 -2.2300 18 6 8.7951 -6.3896 -0.1802 19 6 7.1641 -4.0957 0.6312 20 6 6.8833 -2.5922 0.6239 21 16 2.5413 -1.4261 -0.0050 22 1 -0.3633 0.1008 -1.0227 23 1 -0.3633 -0.9361 0.4240 24 1 -0.3633 0.8353 0.5985 25 1 1.3726 2.7294 -0.9951 26 1 0.9264 2.3689 1.8509 27 1 4.2243 3.5674 -0.4768 28 1 2.5623 5.0644 0.4809 29 1 5.9755 -0.2620 0.0014 30 1 4.4999 -2.6788 -1.8638 31 1 6.2435 -2.3549 -2.0152 32 1 5.7423 -4.7459 -2.4404 33 1 4.9986 -4.8765 -0.8287 34 1 6.6558 -6.6393 -0.2058 35 1 8.1550 -6.1534 -2.8198 36 1 7.5924 -7.7334 -2.2243 37 1 6.4113 -6.4775 -2.6680 38 1 8.9950 -7.4610 -0.1748 39 1 9.5581 -5.8810 -0.7696 40 1 8.8133 -6.0111 0.8419 41 1 8.1449 -4.2806 1.0693 42 1 6.4015 -4.6046 1.2208 43 1 7.6462 -2.0835 0.0344 44 1 6.9019 -2.2141 1.6460 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14589128_15704122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:38:00 Heat of formation + Delta-G solvation = -3.547319 kcal Electronic energy + Delta-G solvation = -22407.987435 eV Core-core repulsion = 19259.662992 eV Total energy + Delta-G solvation = -3148.324443 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.150 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.14076 -40.41242 -38.03380 -37.08753 -34.59312 -32.66223 -31.95611 -29.91373 -28.58696 -28.01839 -25.67621 -24.64865 -23.66450 -23.24490 -21.52089 -20.69118 -20.29387 -19.12901 -17.95239 -17.32312 -16.89035 -16.68490 -16.08156 -15.69729 -15.46543 -15.20807 -15.15262 -14.70952 -14.49274 -14.36893 -14.26239 -13.95807 -13.76126 -13.41599 -13.34548 -13.09088 -12.89607 -12.72503 -12.61393 -12.45570 -12.28721 -12.13633 -12.06100 -12.00386 -11.64532 -11.33156 -11.23260 -11.04194 -10.71514 -10.64073 -10.36522 -10.05300 -8.65089 -4.92903 -0.03037 0.14307 0.73467 1.34275 1.71153 1.80817 1.92390 2.07244 3.39531 3.51334 3.58110 3.66064 3.76818 3.99291 4.05178 4.15656 4.18902 4.30962 4.35327 4.36560 4.46070 4.48720 4.51194 4.59900 4.66080 4.78669 4.79784 4.82200 4.85949 4.97249 5.00959 5.02462 5.07726 5.12570 5.14280 5.18211 5.19612 5.27226 5.34020 5.37357 5.40003 5.55563 5.62636 5.67609 6.30559 6.65747 6.92650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.244 4.244 3 C 0.051 3.949 4 C -0.031 4.031 5 O -0.539 6.539 6 Si 0.794 3.206 7 N -0.570 5.570 8 C 0.311 3.689 9 N -0.686 5.686 10 C 0.154 3.846 11 H 0.081 0.919 12 C -0.132 4.132 13 C -0.110 4.110 14 C -0.080 4.080 15 H 0.068 0.932 16 C -0.090 4.090 17 C -0.152 4.152 18 C -0.151 4.151 19 C -0.110 4.110 20 C -0.118 4.118 21 S 0.117 5.883 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.103 0.897 25 H 0.113 0.887 26 H 0.395 0.605 27 H -0.306 1.306 28 H -0.295 1.295 29 H 0.414 0.586 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.785 -4.668 2.803 5.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.367 4.367 3 C -0.079 4.079 4 C -0.144 4.144 5 O -0.346 6.346 6 Si 0.702 3.298 7 N -0.298 5.298 8 C -0.060 4.060 9 N -0.325 5.325 10 C 0.050 3.950 11 H 0.099 0.901 12 C -0.171 4.171 13 C -0.148 4.148 14 C -0.098 4.098 15 H 0.087 0.913 16 C -0.108 4.108 17 C -0.209 4.209 18 C -0.208 4.208 19 C -0.148 4.148 20 C -0.156 4.156 21 S 0.366 5.634 22 H 0.084 0.916 23 H 0.089 0.911 24 H 0.121 0.879 25 H 0.131 0.869 26 H 0.245 0.755 27 H -0.234 1.234 28 H -0.223 1.223 29 H 0.252 0.748 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.221 -4.721 2.048 5.605 hybrid contribution -0.080 0.775 -0.838 1.144 sum 2.141 -3.946 1.209 4.650 Atomic orbital electron populations 1.20355 0.85723 1.04220 1.03105 1.25405 1.02020 0.93038 1.16269 1.20209 0.86724 0.97724 1.03202 1.24482 0.98100 0.95441 0.96424 1.86419 1.34901 1.91766 1.21494 0.92887 0.74080 0.73059 0.89815 1.65914 1.17713 1.17527 1.28679 1.23514 0.92814 0.91458 0.98220 1.44256 1.01124 1.07775 1.79366 1.21264 0.99199 0.77650 0.96883 0.90111 1.22006 1.01866 0.97026 0.96223 1.21591 0.97244 0.94189 1.01782 1.21204 0.96976 0.95224 0.96407 0.91339 1.21114 0.97833 0.95272 0.96626 1.21919 1.01900 1.00728 0.96370 1.21913 0.96453 1.01365 1.01086 1.21589 1.02911 0.93665 0.96621 1.21726 0.94418 0.97881 1.01596 1.83869 0.95814 1.09933 1.73779 0.91575 0.91111 0.87912 0.86934 0.75471 1.23423 1.22317 0.74800 0.92610 0.91548 0.91130 0.91394 0.91175 0.92998 0.92970 0.92238 0.93044 0.92944 0.91839 0.90285 0.91309 0.90677 0.90506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.07 9.97 71.23 0.71 0.64 16 2 C -0.24 -1.02 6.49 24.57 0.16 -0.86 16 3 C 0.05 0.30 6.00 41.40 0.25 0.55 16 4 C -0.03 -0.11 2.74 71.24 0.20 0.08 16 5 O -0.54 -0.35 10.22 -148.98 -1.52 -1.87 16 6 Si 0.79 3.27 31.88 68.60 2.19 5.45 16 7 N -0.57 -4.28 8.61 -189.85 -1.64 -5.92 16 8 C 0.31 1.37 8.22 179.32 1.47 2.85 16 9 N -0.69 0.06 5.23 -330.39 -1.73 -1.67 16 10 C 0.15 -0.54 2.40 44.99 0.11 -0.43 16 11 H 0.08 -0.24 7.26 -2.38 -0.02 -0.26 16 12 C -0.13 0.37 5.51 30.59 0.17 0.53 16 13 C -0.11 0.48 4.85 30.59 0.15 0.63 16 14 C -0.08 0.40 1.78 -10.79 -0.02 0.38 16 15 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 16 C -0.09 0.37 2.50 -10.79 -0.03 0.34 16 17 C -0.15 0.47 8.84 71.98 0.64 1.11 16 18 C -0.15 0.59 8.84 71.98 0.64 1.22 16 19 C -0.11 0.68 4.85 30.58 0.15 0.83 16 20 C -0.12 0.70 5.39 30.58 0.16 0.87 16 21 S 0.12 0.28 21.68 -56.49 -1.22 -0.94 16 22 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 23 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 24 H 0.10 0.04 5.67 -2.39 -0.01 0.02 16 25 H 0.11 0.49 7.96 -2.39 -0.02 0.47 16 26 H 0.40 -2.56 8.70 -74.05 -0.64 -3.21 16 27 H -0.31 -3.79 7.11 99.48 0.71 -3.08 16 28 H -0.29 -2.63 7.11 99.48 0.71 -1.93 16 29 H 0.41 -0.48 8.73 -92.71 -0.81 -1.29 16 30 H 0.06 -0.01 8.04 -2.39 -0.02 -0.03 16 31 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 32 H 0.07 -0.26 6.43 -2.39 -0.02 -0.28 16 33 H 0.07 -0.30 8.14 -2.38 -0.02 -0.32 16 34 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 35 H 0.05 -0.13 8.14 -2.38 -0.02 -0.15 16 36 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H 0.06 -0.20 6.43 -2.38 -0.02 -0.21 16 38 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 39 H 0.05 -0.17 8.14 -2.38 -0.02 -0.19 16 40 H 0.06 -0.31 6.43 -2.39 -0.02 -0.32 16 41 H 0.08 -0.52 6.43 -2.39 -0.02 -0.53 16 42 H 0.07 -0.42 8.14 -2.38 -0.02 -0.44 16 43 H 0.07 -0.46 8.14 -2.38 -0.02 -0.48 16 44 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 Total: 0.00 -10.38 348.12 0.41 -9.97 By element: Atomic # 1 Polarization: -13.35 SS G_CDS: -0.42 Total: -13.77 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 4.75 Total: 8.75 kcal Atomic # 7 Polarization: -4.22 SS G_CDS: -3.36 Total: -7.59 kcal Atomic # 8 Polarization: -0.35 SS G_CDS: -1.52 Total: -1.87 kcal Atomic # 14 Polarization: 3.27 SS G_CDS: 2.19 Total: 5.45 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -1.22 Total: -0.94 kcal Total: -10.38 0.41 -9.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14589128_15704122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.426 kcal (2) G-P(sol) polarization free energy of solvation -10.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds