Wall clock time and date at job start Mon Mar 8 2021 04:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 6 6 C 1.52996 * 109.47131 * 179.97438 * 4 2 1 7 7 C 1.52997 * 109.47131 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.47232 * 300.00126 * 7 6 4 9 9 H 1.09001 * 109.47375 * 299.99867 * 8 7 6 10 10 N 1.46507 * 109.47235 * 180.02562 * 8 7 6 11 11 C 1.39138 * 119.99890 * 155.00422 * 10 8 7 12 12 N 1.32334 * 119.72073 * 359.97438 * 11 10 8 13 13 C 1.32012 * 121.64512 * 179.97438 * 12 11 10 14 14 C 1.37980 * 120.90081 * 0.02562 * 13 12 11 15 15 C 1.50707 * 120.32673 * 179.97438 * 14 13 12 16 16 O 1.42900 * 109.47058 * 119.99774 * 15 14 13 17 17 Si 1.86303 * 109.46911 * 0.02562 * 15 14 13 18 18 C 1.38904 * 119.35207 * 0.02562 * 14 13 12 19 19 C 1.38450 * 118.47894 * 359.74650 * 18 14 13 20 20 F 1.35105 * 120.47120 * 180.26913 * 19 18 14 21 21 C 1.52996 * 109.46975 * 60.00237 * 8 7 6 22 22 C 1.52997 * 109.47232 * 300.00122 * 4 2 1 23 23 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 26 26 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 27 27 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 29 29 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 30 30 H 1.09000 * 109.47380 * 300.00763 * 6 4 2 31 31 H 1.09001 * 109.46997 * 60.00426 * 6 4 2 32 32 H 1.08998 * 109.47076 * 60.00779 * 7 6 4 33 33 H 1.09002 * 109.47153 * 180.02562 * 7 6 4 34 34 H 0.97003 * 119.99653 * 335.00077 * 10 8 7 35 35 H 1.08000 * 119.54612 * 179.97438 * 13 12 11 36 36 H 1.08994 * 109.47393 * 240.00291 * 15 14 13 37 37 H 0.96695 * 114.00043 * 300.00881 * 16 15 14 38 38 H 1.48495 * 109.99918 * 179.97438 * 17 15 14 39 39 H 1.48494 * 110.00224 * 301.31798 * 17 15 14 40 40 H 1.07997 * 120.76298 * 179.97438 * 18 14 13 41 41 H 1.09001 * 109.47367 * 60.00185 * 21 8 7 42 42 H 1.09004 * 109.47108 * 179.97438 * 21 8 7 43 43 H 1.08998 * 109.47624 * 300.00318 * 22 4 2 44 44 H 1.09002 * 109.47045 * 59.99942 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 1 1.6767 -0.2074 -2.1392 6 6 3.5700 -0.7207 -1.2495 7 6 4.0800 -1.4414 -2.4990 8 6 3.5705 -2.8841 -2.4994 9 1 3.9342 -3.3981 -1.6096 10 7 4.0594 -3.5744 -3.6956 11 6 4.1927 -4.9594 -3.6939 12 7 3.8767 -5.6476 -2.6086 13 6 3.9880 -6.9623 -2.5653 14 6 4.4418 -7.6714 -3.6585 15 6 4.5644 -9.1721 -3.5947 16 8 3.7318 -9.7610 -4.5957 17 14 4.0285 -9.7679 -1.9128 18 6 4.7856 -6.9884 -4.8182 19 6 4.6541 -5.6103 -4.8363 20 9 4.9718 -4.9062 -5.9448 21 6 2.0406 -2.8846 -2.4991 22 6 1.5301 -2.1637 -1.2492 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.9330 0.3071 -1.2496 31 1 3.9337 -1.2343 -0.3595 32 1 3.7164 -0.9274 -3.3888 33 1 5.1700 -1.4414 -2.4990 34 1 4.2901 -3.0658 -4.4887 35 1 3.7210 -7.4899 -1.6616 36 1 5.6011 -9.4597 -3.7691 37 1 2.7934 -9.5470 -4.5025 38 1 4.1441 -11.2464 -1.8372 39 1 4.8655 -9.1380 -0.8604 40 1 5.1436 -7.5205 -5.6871 41 1 1.6769 -2.3707 -3.3889 42 1 1.6776 -3.9124 -2.4998 43 1 1.8933 -2.6776 -0.3592 44 1 0.4400 -2.1637 -1.2492 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14589128_17656566.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:38:03 Heat of formation + Delta-G solvation = -51.808981 kcal Electronic energy + Delta-G solvation = -24275.576198 eV Core-core repulsion = 20722.090369 eV Total energy + Delta-G solvation = -3553.485829 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.96591 -41.49458 -40.26151 -38.13249 -37.04096 -34.67938 -33.21225 -31.88889 -31.59571 -29.18895 -27.99677 -26.40633 -25.13947 -23.54085 -23.35233 -22.71589 -21.13069 -20.62754 -19.28045 -18.49696 -18.33195 -17.57826 -17.02560 -16.77754 -16.09897 -16.03040 -15.84923 -15.39346 -15.24802 -15.17967 -14.92419 -14.47738 -14.41932 -14.33193 -14.19523 -13.93307 -13.49024 -13.35346 -13.07763 -12.75469 -12.70327 -12.51820 -12.30358 -12.12360 -12.06836 -12.00870 -11.66382 -11.42552 -11.27936 -11.00174 -10.85094 -10.65724 -10.60481 -10.41054 -8.75703 -4.97247 -0.08908 0.10437 1.31939 1.65860 1.98030 1.99564 2.54252 3.01988 3.27778 3.49024 3.66046 3.70082 3.72079 3.81135 3.85296 4.00258 4.06412 4.15754 4.33690 4.36600 4.42009 4.43305 4.46766 4.57640 4.59433 4.67870 4.69972 4.72314 4.83934 4.85944 4.97595 5.02263 5.03809 5.07068 5.12425 5.16054 5.22694 5.24612 5.32454 5.36467 5.40123 5.47668 5.57763 5.65616 5.99806 6.19605 6.78641 6.96162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.151 4.151 4 C -0.078 4.078 5 H 0.068 0.932 6 C -0.108 4.108 7 C -0.123 4.123 8 C 0.162 3.838 9 H 0.079 0.921 10 N -0.712 5.712 11 C 0.383 3.617 12 N -0.524 5.524 13 C 0.147 3.853 14 C -0.207 4.207 15 C -0.059 4.059 16 O -0.556 6.556 17 Si 0.774 3.226 18 C -0.041 4.041 19 C -0.040 4.040 20 F -0.142 7.142 21 C -0.120 4.120 22 C -0.108 4.108 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.414 0.586 35 H 0.183 0.817 36 H 0.111 0.889 37 H 0.396 0.604 38 H -0.296 1.296 39 H -0.279 1.279 40 H 0.153 0.847 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.660 1.586 2.032 3.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 C -0.208 4.208 4 C -0.097 4.097 5 H 0.086 0.914 6 C -0.146 4.146 7 C -0.161 4.161 8 C 0.057 3.943 9 H 0.097 0.903 10 N -0.344 5.344 11 C 0.145 3.855 12 N -0.241 5.241 13 C -0.010 4.010 14 C -0.212 4.212 15 C -0.169 4.169 16 O -0.364 6.364 17 Si 0.679 3.321 18 C -0.067 4.067 19 C -0.066 4.066 20 F -0.121 7.121 21 C -0.159 4.159 22 C -0.146 4.146 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.251 0.749 35 H 0.199 0.801 36 H 0.128 0.872 37 H 0.246 0.754 38 H -0.224 1.224 39 H -0.206 1.206 40 H 0.171 0.829 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.220 1.541 3.402 4.345 hybrid contribution 1.056 0.029 -1.835 2.117 sum -1.164 1.570 1.568 2.505 Atomic orbital electron populations 1.21907 0.95315 1.01966 1.01601 1.21116 0.95697 0.96122 0.97944 1.21909 1.01352 0.95894 1.01628 1.21190 0.95029 0.95459 0.98006 0.91398 1.21564 0.95192 1.00791 0.97088 1.21779 1.00830 0.93711 0.99760 1.20971 0.93741 0.92370 0.87195 0.90283 1.44802 1.70494 1.01395 1.17711 1.18583 0.91494 0.86965 0.88477 1.67363 1.22420 1.09429 1.24899 1.22702 0.92199 0.88351 0.97764 1.20980 1.07450 0.98084 0.94728 1.24991 0.98333 0.88871 1.04720 1.86473 1.23326 1.73756 1.52826 0.93788 0.89189 0.76955 0.72146 1.21413 0.94729 0.90876 0.99657 1.18158 1.12812 0.91017 0.84645 1.91462 1.91433 1.78565 1.50627 1.21857 0.94948 1.00439 0.98682 1.21569 1.00761 0.94908 0.97337 0.92904 0.92175 0.92919 0.91395 0.92095 0.92854 0.92956 0.90637 0.91789 0.90999 0.91446 0.74895 0.80099 0.87188 0.75431 1.22404 1.20593 0.82938 0.92292 0.92555 0.91848 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.32 8.84 71.98 0.64 0.96 16 2 C -0.09 0.23 2.51 -10.79 -0.03 0.20 16 3 C -0.15 0.37 8.84 71.98 0.64 1.01 16 4 C -0.08 0.23 1.77 -10.80 -0.02 0.21 16 5 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 6 C -0.11 0.36 4.85 30.59 0.15 0.51 16 7 C -0.12 0.35 5.39 30.59 0.16 0.51 16 8 C 0.16 -0.05 2.47 44.99 0.11 0.06 16 9 H 0.08 0.20 7.54 -2.39 -0.02 0.18 16 10 N -0.71 -0.95 5.23 -324.28 -1.69 -2.65 16 11 C 0.38 1.61 7.47 133.09 0.99 2.60 16 12 N -0.52 -1.91 9.20 -193.04 -1.78 -3.69 16 13 C 0.15 -0.02 9.84 84.60 0.83 0.81 16 14 C -0.21 0.07 5.40 -19.76 -0.11 -0.04 16 15 C -0.06 0.13 2.84 71.24 0.20 0.33 16 16 O -0.56 0.69 12.78 -148.98 -1.90 -1.21 16 17 Si 0.77 -3.14 29.82 68.60 2.05 -1.09 16 18 C -0.04 -0.09 9.75 22.48 0.22 0.13 16 19 C -0.04 -0.18 7.35 22.59 0.17 -0.02 16 20 F -0.14 -0.86 16.65 44.97 0.75 -0.11 16 21 C -0.12 0.06 5.51 30.61 0.17 0.23 16 22 C -0.11 0.23 4.86 30.61 0.15 0.38 16 23 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 24 H 0.06 -0.15 6.43 -2.39 -0.02 -0.16 16 25 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 26 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 27 H 0.06 -0.18 6.43 -2.39 -0.02 -0.20 16 28 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 29 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.08 -0.29 6.43 -2.39 -0.02 -0.30 16 31 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 33 H 0.07 -0.16 8.14 -2.39 -0.02 -0.17 16 34 H 0.41 -0.18 8.07 -92.71 -0.75 -0.93 16 35 H 0.18 -0.96 4.88 -2.91 -0.01 -0.97 16 36 H 0.11 -0.14 7.96 -2.39 -0.02 -0.15 16 37 H 0.40 -3.60 8.70 -74.06 -0.64 -4.24 16 38 H -0.30 -1.07 7.11 99.48 0.71 -0.36 16 39 H -0.28 -0.07 7.11 99.48 0.71 0.64 16 40 H 0.15 0.12 8.06 -2.91 -0.02 0.09 16 41 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 42 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 43 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 44 H 0.07 -0.15 6.43 -2.39 -0.02 -0.17 16 Total: 0.00 -10.22 344.19 1.35 -8.88 By element: Atomic # 1 Polarization: -7.65 SS G_CDS: -0.35 Total: -8.00 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 4.28 Total: 7.88 kcal Atomic # 7 Polarization: -2.87 SS G_CDS: -3.47 Total: -6.34 kcal Atomic # 8 Polarization: 0.69 SS G_CDS: -1.90 Total: -1.21 kcal Atomic # 9 Polarization: -0.86 SS G_CDS: 0.75 Total: -0.11 kcal Atomic # 14 Polarization: -3.14 SS G_CDS: 2.05 Total: -1.09 kcal Total: -10.22 1.35 -8.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14589128_17656566.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.931 kcal (2) G-P(sol) polarization free energy of solvation -10.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds