Wall clock time and date at job start Mon Mar 8 2021 04:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45205 * 109.47081 * 2 1 4 4 C 1.34226 * 117.00010 * 179.97438 * 3 2 1 5 5 O 1.20829 * 119.99942 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00126 * 179.97438 * 4 3 2 7 7 H 1.09004 * 109.46826 * 60.00228 * 6 4 3 8 8 C 1.52994 * 109.47235 * 179.97438 * 6 4 3 9 9 C 1.53004 * 109.47151 * 180.02562 * 8 6 4 10 10 C 1.52993 * 109.46944 * 299.99939 * 9 8 6 11 11 H 1.09004 * 109.47654 * 299.99981 * 10 9 8 12 12 N 1.46505 * 109.47219 * 179.97438 * 10 9 8 13 13 C 1.38993 * 120.00282 * 155.00152 * 12 10 9 14 14 N 1.32397 * 119.70858 * 179.97438 * 13 12 10 15 15 C 1.31977 * 121.62351 * 179.97438 * 14 13 12 16 16 C 1.38018 * 120.85481 * 359.97438 * 15 14 13 17 17 C 1.50707 * 120.33108 * 180.02562 * 16 15 14 18 18 O 1.42897 * 109.46942 * 120.00383 * 17 16 15 19 19 Si 1.86301 * 109.47160 * 359.97438 * 17 16 15 20 20 C 1.38880 * 119.33470 * 0.02562 * 16 15 14 21 21 C 1.38305 * 118.50194 * 359.97438 * 20 16 15 22 22 C 1.53004 * 109.47183 * 60.00186 * 10 9 8 23 23 C 1.52998 * 109.46907 * 300.00214 * 6 4 3 24 24 H 1.08994 * 109.47374 * 300.00090 * 1 2 3 25 25 H 1.09002 * 109.46750 * 60.00291 * 1 2 3 26 26 H 1.09001 * 109.47358 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47374 * 239.99910 * 2 1 3 28 28 H 1.09002 * 109.46750 * 119.99709 * 2 1 3 29 29 H 1.08999 * 109.46937 * 59.99939 * 8 6 4 30 30 H 1.09007 * 109.47475 * 299.99900 * 8 6 4 31 31 H 1.09000 * 109.47094 * 180.02562 * 9 8 6 32 32 H 1.09004 * 109.46930 * 60.00363 * 9 8 6 33 33 H 0.97001 * 119.99758 * 335.00095 * 12 10 9 34 34 H 1.08002 * 119.56975 * 179.97438 * 15 14 13 35 35 H 1.09003 * 109.46939 * 240.00377 * 17 16 15 36 36 H 0.96698 * 113.99936 * 299.99805 * 18 17 16 37 37 H 1.48498 * 109.99675 * 179.97438 * 19 17 16 38 38 H 1.48499 * 110.00261 * 301.32262 * 19 17 16 39 39 H 1.07998 * 120.75276 * 180.24919 * 20 16 15 40 40 H 1.07999 * 120.44559 * 179.97438 * 21 20 16 41 41 H 1.08999 * 109.47024 * 59.99875 * 22 10 9 42 42 H 1.09001 * 109.46913 * 179.97438 * 22 10 9 43 43 H 1.08997 * 109.47430 * 299.99269 * 23 6 4 44 44 H 1.09000 * 109.47285 * 59.99963 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5844 3.4701 0.8896 8 6 5.4486 2.8574 0.0014 9 6 6.0334 4.2712 0.0015 10 6 5.5630 5.0177 -1.2484 11 1 5.8997 4.4853 -2.1380 12 7 6.1224 6.3718 -1.2480 13 6 6.2922 7.0539 -2.4471 14 7 6.7978 8.2775 -2.4400 15 6 6.9757 8.9593 -3.5559 16 6 6.6385 8.4156 -4.7789 17 6 6.8472 9.2045 -6.0460 18 8 7.7425 8.4965 -6.9058 19 14 7.5719 10.8693 -5.6288 20 6 6.1050 7.1344 -4.8302 21 6 5.9302 6.4444 -3.6444 22 6 4.0350 5.0978 -1.2498 23 6 3.4497 3.6836 -1.2499 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.7853 2.3245 -0.8879 30 1 5.7838 2.3259 0.8921 31 1 7.1219 4.2142 0.0021 32 1 5.6966 4.8036 0.8911 33 1 6.3743 6.7922 -0.4110 34 1 7.3905 9.9555 -3.5115 35 1 5.8907 9.3411 -6.5506 36 1 8.6154 8.3389 -6.5208 37 1 7.7831 11.6566 -6.8701 38 1 6.6647 11.6024 -4.7098 39 1 5.8369 6.6853 -5.7750 40 1 5.5176 5.4463 -3.6477 41 1 3.6983 5.6303 -0.3603 42 1 3.7000 5.6301 -2.1401 43 1 3.7861 3.1511 -2.1394 44 1 2.3612 3.7407 -1.2504 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14589460_13915762.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:39:17 Heat of formation + Delta-G solvation = -83.049907 kcal Electronic energy + Delta-G solvation = -25100.999499 eV Core-core repulsion = 21405.560032 eV Total energy + Delta-G solvation = -3695.439467 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.88307 -41.40184 -39.67486 -37.97527 -37.64631 -35.93848 -33.48155 -32.83570 -32.05062 -31.74917 -30.16862 -26.52777 -25.17032 -24.87268 -23.71691 -23.59391 -22.56220 -21.73149 -20.90493 -18.81036 -18.60191 -18.44805 -17.76301 -17.65711 -17.43017 -16.50454 -16.23315 -16.00437 -15.83028 -15.50572 -15.32773 -14.92157 -14.83162 -14.48773 -14.30590 -14.12959 -14.01333 -13.80452 -13.50941 -13.39692 -13.26261 -12.95444 -12.67168 -12.53024 -12.47301 -12.28506 -12.17080 -12.08145 -11.74787 -11.58100 -11.49143 -11.29738 -10.99362 -10.72447 -10.40330 -10.36300 -8.67080 -4.98010 0.24474 0.41876 1.09391 1.35450 1.62120 1.64553 1.97973 2.10350 2.85409 3.45735 3.52693 3.58436 3.62565 3.66060 3.80558 3.91451 3.96362 4.00677 4.02347 4.06706 4.11154 4.16514 4.26870 4.30382 4.31383 4.40320 4.42884 4.54526 4.66611 4.73521 4.77901 4.82346 4.87258 4.88515 5.02834 5.05613 5.07937 5.10163 5.14979 5.25159 5.27818 5.37272 5.43962 5.56178 6.05406 6.58165 6.65404 6.80687 7.16956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.361 6.361 4 C 0.463 3.537 5 O -0.540 6.540 6 C -0.076 4.076 7 H 0.129 0.871 8 C -0.096 4.096 9 C -0.115 4.115 10 C 0.153 3.847 11 H 0.084 0.916 12 N -0.714 5.714 13 C 0.399 3.601 14 N -0.564 5.564 15 C 0.146 3.854 16 C -0.238 4.238 17 C -0.054 4.054 18 O -0.557 6.557 19 Si 0.766 3.234 20 C -0.013 4.013 21 C -0.243 4.243 22 C -0.126 4.126 23 C -0.102 4.102 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.408 0.592 34 H 0.167 0.833 35 H 0.106 0.894 36 H 0.394 0.606 37 H -0.297 1.297 38 H -0.286 1.286 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.971 -0.708 1.954 2.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.308 3.692 5 O -0.430 6.430 6 C -0.095 4.095 7 H 0.147 0.853 8 C -0.134 4.134 9 C -0.153 4.153 10 C 0.048 3.952 11 H 0.102 0.898 12 N -0.345 5.345 13 C 0.162 3.838 14 N -0.282 5.282 15 C -0.011 4.011 16 C -0.243 4.243 17 C -0.165 4.165 18 O -0.365 6.365 19 Si 0.672 3.328 20 C -0.039 4.039 21 C -0.267 4.267 22 C -0.165 4.165 23 C -0.140 4.140 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.113 0.887 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.244 0.756 34 H 0.183 0.817 35 H 0.124 0.876 36 H 0.244 0.756 37 H -0.225 1.225 38 H -0.213 1.213 39 H 0.161 0.839 40 H 0.164 0.836 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.247 0.019 2.322 2.636 hybrid contribution -0.693 -0.853 -0.571 1.239 sum -1.940 -0.835 1.751 2.743 Atomic orbital electron populations 1.21822 0.90769 1.04213 1.03732 1.23230 0.96862 0.79470 1.02402 1.86518 1.24400 1.33328 1.83478 1.24341 0.80501 0.93349 0.71002 1.90675 1.61110 1.44490 1.46744 1.21262 0.96619 0.88234 1.03397 0.85321 1.21341 0.91407 0.96959 1.03742 1.21709 1.01640 0.94414 0.97566 1.21127 0.92916 0.81110 1.00021 0.89778 1.44633 1.68444 1.16040 1.05392 1.18610 0.89560 0.88215 0.87386 1.67158 1.20896 1.07994 1.32128 1.22450 0.93586 0.98433 0.86621 1.21029 1.08828 0.98129 0.96343 1.24842 0.97086 1.04678 0.89916 1.86450 1.27867 1.78820 1.43324 0.93837 0.87533 0.73088 0.78309 1.21378 0.91305 0.92724 0.98454 1.21656 1.10318 1.03142 0.91616 1.21983 0.94731 0.96162 1.03615 1.21459 1.01952 0.95055 0.95537 0.91259 0.91230 0.88670 0.91481 0.91504 0.91433 0.90772 0.90112 0.89563 0.75593 0.81657 0.87619 0.75624 1.22502 1.21303 0.83924 0.83557 0.90376 0.91255 0.91195 0.89660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.59 10.29 71.98 0.74 1.33 16 2 C 0.05 0.03 6.19 71.98 0.45 0.47 16 3 O -0.36 -0.89 10.12 -51.38 -0.52 -1.41 16 4 C 0.46 1.42 7.25 71.23 0.52 1.94 16 5 O -0.54 -5.20 15.73 21.95 0.35 -4.85 16 6 C -0.08 0.29 2.63 -11.54 -0.03 0.26 16 7 H 0.13 -0.91 8.14 -2.38 -0.02 -0.93 16 8 C -0.10 0.37 4.49 30.59 0.14 0.51 16 9 C -0.12 0.80 5.39 30.59 0.16 0.96 16 10 C 0.15 -0.85 2.14 44.99 0.10 -0.75 16 11 H 0.08 -0.42 6.45 -2.38 -0.02 -0.43 16 12 N -0.71 1.56 5.24 -324.54 -1.70 -0.14 16 13 C 0.40 0.96 7.63 133.07 1.02 1.97 16 14 N -0.56 -2.85 10.39 -193.27 -2.01 -4.86 16 15 C 0.15 0.32 9.84 84.62 0.83 1.16 16 16 C -0.24 -0.24 5.40 -19.76 -0.11 -0.35 16 17 C -0.05 0.02 2.84 71.24 0.20 0.22 16 18 O -0.56 -0.08 12.78 -148.98 -1.90 -1.99 16 19 Si 0.77 -1.25 29.82 68.60 2.05 0.80 16 20 C -0.01 -0.01 9.77 22.44 0.22 0.21 16 21 C -0.24 -0.15 8.84 22.50 0.20 0.05 16 22 C -0.13 0.76 5.42 30.61 0.17 0.93 16 23 C -0.10 0.57 5.14 30.61 0.16 0.73 16 24 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 25 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 26 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 27 H 0.07 0.07 8.13 -2.39 -0.02 0.05 16 28 H 0.07 0.07 8.13 -2.39 -0.02 0.05 16 29 H 0.07 -0.11 8.10 -2.39 -0.02 -0.13 16 30 H 0.07 -0.16 8.10 -2.38 -0.02 -0.18 16 31 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 32 H 0.09 -0.75 8.14 -2.38 -0.02 -0.77 16 33 H 0.41 -1.26 8.73 -92.71 -0.81 -2.07 16 34 H 0.17 -0.29 4.88 -2.91 -0.01 -0.31 16 35 H 0.11 0.06 7.96 -2.39 -0.02 0.04 16 36 H 0.39 -2.93 8.70 -74.06 -0.64 -3.58 16 37 H -0.30 -1.68 7.11 99.48 0.71 -0.97 16 38 H -0.29 -0.94 7.11 99.48 0.71 -0.23 16 39 H 0.14 -0.16 8.06 -2.91 -0.02 -0.18 16 40 H 0.15 -0.42 6.08 -2.91 -0.02 -0.44 16 41 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 42 H 0.07 -0.29 7.67 -2.39 -0.02 -0.31 16 43 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 44 H 0.08 -0.47 8.11 -2.39 -0.02 -0.48 16 Total: 0.00 -16.95 355.79 0.61 -16.34 By element: Atomic # 1 Polarization: -13.12 SS G_CDS: -0.40 Total: -13.52 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 4.76 Total: 9.64 kcal Atomic # 7 Polarization: -1.30 SS G_CDS: -3.71 Total: -5.01 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -2.08 Total: -8.25 kcal Atomic # 14 Polarization: -1.25 SS G_CDS: 2.05 Total: 0.80 kcal Total: -16.95 0.61 -16.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14589460_13915762.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.713 kcal (2) G-P(sol) polarization free energy of solvation -16.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds