Wall clock time and date at job start Mon Mar 8 2021 04:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45200 * 109.47003 * 2 1 4 4 C 1.34222 * 117.00098 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00130 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99989 * 180.02562 * 4 3 2 7 7 H 1.08994 * 109.47313 * 59.99805 * 6 4 3 8 8 C 1.53005 * 109.47031 * 179.97438 * 6 4 3 9 9 C 1.53000 * 109.47148 * 179.97438 * 8 6 4 10 10 C 1.53007 * 109.46890 * 300.00302 * 9 8 6 11 11 H 1.08997 * 109.47019 * 299.99428 * 10 9 8 12 12 N 1.46500 * 109.46749 * 179.97438 * 10 9 8 13 13 C 1.38616 * 120.00055 * 154.99987 * 12 10 9 14 14 N 1.29684 * 124.94564 * 0.02590 * 13 12 10 15 15 C 1.32118 * 116.86540 * 179.97438 * 14 13 12 16 16 C 1.33329 * 114.58007 * 359.97438 * 15 14 13 17 17 C 1.50705 * 125.95221 * 180.02562 * 16 15 14 18 18 O 1.42893 * 109.46648 * 299.99782 * 17 16 15 19 19 Si 1.86295 * 109.46957 * 179.97438 * 17 16 15 20 20 S 1.70960 * 124.95020 * 179.72284 * 13 12 10 21 21 C 1.52995 * 109.47159 * 60.00113 * 10 9 8 22 22 C 1.52996 * 109.47096 * 299.99621 * 6 4 3 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 300.00258 * 1 2 3 25 25 H 1.09000 * 109.47050 * 60.00087 * 1 2 3 26 26 H 1.09000 * 109.47050 * 119.99913 * 2 1 3 27 27 H 1.09001 * 109.46801 * 240.00026 * 2 1 3 28 28 H 1.08998 * 109.47391 * 299.99865 * 8 6 4 29 29 H 1.09003 * 109.46727 * 60.00253 * 8 6 4 30 30 H 1.09003 * 109.47242 * 59.99663 * 9 8 6 31 31 H 1.08999 * 109.47195 * 180.02562 * 9 8 6 32 32 H 0.97001 * 120.00362 * 335.00454 * 12 10 9 33 33 H 1.08000 * 122.71248 * 180.02562 * 15 14 13 34 34 H 1.09000 * 109.46985 * 59.99487 * 17 16 15 35 35 H 0.96705 * 114.00311 * 299.99432 * 18 17 16 36 36 H 1.48497 * 109.99951 * 179.97438 * 19 17 16 37 37 H 1.48503 * 110.00296 * 301.31875 * 19 17 16 38 38 H 1.09003 * 109.47658 * 60.00219 * 21 10 9 39 39 H 1.09003 * 109.47026 * 179.97438 * 21 10 9 40 40 H 1.09003 * 109.47498 * 300.00259 * 22 6 4 41 41 H 1.08999 * 109.47410 * 59.99899 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.5851 3.4691 0.8904 8 6 5.4486 2.8575 -0.0001 9 6 6.0334 4.2713 -0.0002 10 6 5.5616 5.0182 -1.2495 11 1 5.8975 4.4861 -2.1394 12 7 6.1210 6.3722 -1.2492 13 6 6.2891 7.0529 -2.4450 14 7 5.9844 6.5848 -3.6154 15 6 6.2115 7.3729 -4.6512 16 6 6.7312 8.5608 -4.3408 17 6 7.0887 9.6524 -5.3165 18 8 8.0676 9.1664 -6.2371 19 14 7.7789 11.1130 -4.3887 20 16 6.9214 8.6345 -2.5910 21 6 4.0337 5.0983 -1.2492 22 6 3.4485 3.6851 -1.2486 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 5.7847 2.3250 0.8896 29 1 5.7844 2.3257 -0.8904 30 1 5.6974 4.8035 0.8898 31 1 7.1219 4.2143 -0.0008 32 1 6.3739 6.7924 -0.4123 33 1 5.9930 7.0789 -5.6672 34 1 6.1963 9.9580 -5.8627 35 1 8.8903 8.8762 -5.8197 36 1 8.1359 12.1961 -5.3397 37 1 6.7817 11.6077 -3.4057 38 1 3.6978 5.6305 -0.3592 39 1 3.6976 5.6308 -2.1390 40 1 3.7841 3.1535 -2.1391 41 1 2.3600 3.7421 -1.2481 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14589460_15704118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:39:20 Heat of formation + Delta-G solvation = -76.034628 kcal Electronic energy + Delta-G solvation = -23580.579513 eV Core-core repulsion = 19974.596498 eV Total energy + Delta-G solvation = -3605.983015 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.85222 -40.82963 -39.56692 -37.94114 -37.66137 -35.93928 -32.83195 -31.90323 -31.73552 -30.49141 -26.75337 -25.58447 -24.40149 -23.83637 -23.48341 -22.12590 -21.06072 -20.63240 -19.60712 -18.74254 -18.15936 -17.67276 -17.64354 -17.01440 -16.59482 -16.26570 -15.80403 -15.75650 -15.44376 -15.15743 -14.93554 -14.89100 -14.54515 -14.20527 -13.99688 -13.82521 -13.51967 -13.27835 -12.96313 -12.91604 -12.67935 -12.53226 -12.44750 -12.43239 -12.19406 -12.00138 -11.78663 -11.58789 -11.49586 -11.29907 -10.98841 -10.77837 -10.25018 -10.13962 -8.71829 -5.09982 -0.03491 0.04243 0.68388 1.08717 1.27997 1.58530 1.62339 1.89439 1.99692 2.19884 3.43485 3.52174 3.57130 3.61007 3.71770 3.91954 3.94908 3.97045 4.02063 4.08374 4.18405 4.29631 4.31703 4.33293 4.43005 4.49080 4.63084 4.72972 4.75711 4.82042 4.87192 4.90411 5.04440 5.06895 5.08441 5.11238 5.14642 5.25583 5.35088 5.43549 5.86317 6.20902 6.64762 6.73257 7.04692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.361 6.361 4 C 0.463 3.537 5 O -0.541 6.541 6 C -0.074 4.074 7 H 0.135 0.865 8 C -0.097 4.097 9 C -0.115 4.115 10 C 0.161 3.839 11 H 0.070 0.930 12 N -0.679 5.679 13 C 0.318 3.682 14 N -0.578 5.578 15 C 0.104 3.896 16 C -0.310 4.310 17 C -0.014 4.014 18 O -0.551 6.551 19 Si 0.731 3.269 20 S 0.115 5.885 21 C -0.119 4.119 22 C -0.101 4.101 23 H 0.095 0.905 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.426 0.574 33 H 0.175 0.825 34 H 0.117 0.883 35 H 0.395 0.605 36 H -0.273 1.273 37 H -0.267 1.267 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.167 1.800 4.889 5.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.308 3.692 5 O -0.430 6.430 6 C -0.093 4.093 7 H 0.153 0.847 8 C -0.135 4.135 9 C -0.153 4.153 10 C 0.054 3.946 11 H 0.088 0.912 12 N -0.319 5.319 13 C -0.053 4.053 14 N -0.304 5.304 15 C -0.047 4.047 16 C -0.433 4.433 17 C -0.128 4.128 18 O -0.359 6.359 19 Si 0.634 3.366 20 S 0.364 5.636 21 C -0.158 4.158 22 C -0.139 4.139 23 H 0.114 0.886 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.265 0.735 33 H 0.192 0.808 34 H 0.134 0.866 35 H 0.245 0.755 36 H -0.199 1.199 37 H -0.193 1.193 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.113 2.524 5.332 5.900 hybrid contribution -0.666 -0.917 -1.092 1.574 sum -0.779 1.607 4.240 4.601 Atomic orbital electron populations 1.21823 0.90712 1.04235 1.03735 1.23237 0.96910 0.79467 1.02389 1.86515 1.24384 1.33349 1.83476 1.24351 0.80516 0.93377 0.70981 1.90669 1.61113 1.44499 1.46763 1.21261 0.96657 0.88200 1.03207 0.84724 1.21343 0.91411 0.97203 1.03559 1.21750 1.01806 0.94317 0.97415 1.21028 0.92894 0.81073 0.99628 0.91156 1.44168 1.68193 1.16220 1.03335 1.23953 0.96609 0.93911 0.90789 1.66482 1.29733 1.36787 0.97423 1.21407 0.95909 0.89188 0.98201 1.25687 1.18468 1.03217 0.95951 1.24229 0.95135 1.00442 0.92952 1.86475 1.28619 1.85587 1.35206 0.94091 0.86346 0.76381 0.79776 1.83804 1.63940 1.12178 1.03630 1.21842 0.94860 0.96008 1.03067 1.21399 1.01783 0.95273 0.95434 0.88621 0.91127 0.91352 0.91339 0.91670 0.90294 0.92194 0.88590 0.89779 0.73459 0.80842 0.86579 0.75511 1.19868 1.19299 0.89728 0.92438 0.92316 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.47 10.29 71.98 0.74 1.21 16 2 C 0.05 0.08 6.19 71.98 0.45 0.53 16 3 O -0.36 -1.34 10.12 -51.34 -0.52 -1.86 16 4 C 0.46 2.07 7.25 71.24 0.52 2.59 16 5 O -0.54 -5.94 15.73 21.98 0.35 -5.59 16 6 C -0.07 0.18 2.63 -11.54 -0.03 0.15 16 7 H 0.14 -0.94 8.14 -2.39 -0.02 -0.96 16 8 C -0.10 0.26 4.49 30.60 0.14 0.40 16 9 C -0.11 0.79 5.39 30.60 0.16 0.96 16 10 C 0.16 -0.51 2.59 44.99 0.12 -0.40 16 11 H 0.07 0.15 7.77 -2.39 -0.02 0.13 16 12 N -0.68 2.49 5.23 -330.40 -1.73 0.76 16 13 C 0.32 0.47 8.06 179.32 1.45 1.92 16 14 N -0.58 -3.43 9.90 -202.03 -2.00 -5.43 16 15 C 0.10 0.46 11.22 83.54 0.94 1.40 16 16 C -0.31 -0.44 5.74 24.58 0.14 -0.30 16 17 C -0.01 0.00 2.99 71.24 0.21 0.21 16 18 O -0.55 -0.29 12.87 -148.98 -1.92 -2.21 16 19 Si 0.73 -1.09 31.05 68.60 2.13 1.04 16 20 S 0.12 -0.13 20.57 -56.49 -1.16 -1.29 16 21 C -0.12 0.38 5.50 30.58 0.17 0.55 16 22 C -0.10 0.24 5.13 30.58 0.16 0.39 16 23 H 0.10 -0.57 8.14 -2.39 -0.02 -0.59 16 24 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 25 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 26 H 0.07 0.12 8.13 -2.39 -0.02 0.10 16 27 H 0.06 0.16 8.13 -2.39 -0.02 0.14 16 28 H 0.08 -0.15 8.10 -2.39 -0.02 -0.17 16 29 H 0.06 0.07 8.10 -2.39 -0.02 0.05 16 30 H 0.10 -1.04 8.14 -2.39 -0.02 -1.06 16 31 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 32 H 0.43 -3.79 8.73 -92.71 -0.81 -4.60 16 33 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 34 H 0.12 0.06 7.96 -2.39 -0.02 0.04 16 35 H 0.39 -2.76 8.70 -74.05 -0.64 -3.40 16 36 H -0.27 -1.26 7.11 99.48 0.71 -0.55 16 37 H -0.27 -0.75 7.11 99.48 0.71 -0.05 16 38 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 40 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.08 -0.22 8.11 -2.39 -0.02 -0.23 16 Total: 0.00 -17.08 352.25 -0.07 -17.15 By element: Atomic # 1 Polarization: -11.81 SS G_CDS: -0.37 Total: -12.18 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 5.15 Total: 9.60 kcal Atomic # 7 Polarization: -0.94 SS G_CDS: -3.73 Total: -4.67 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -2.09 Total: -9.65 kcal Atomic # 14 Polarization: -1.09 SS G_CDS: 2.13 Total: 1.04 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -1.16 Total: -1.29 kcal Total: -17.08 -0.07 -17.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14589460_15704118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.887 kcal (2) G-P(sol) polarization free energy of solvation -17.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds