Wall clock time and date at job start Mon Mar 8 2021 04:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45206 * 109.46971 * 2 1 4 4 C 1.34229 * 116.99376 * 180.02562 * 3 2 1 5 5 O 1.20820 * 120.00472 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99466 * 179.97438 * 4 3 2 7 7 H 1.08994 * 109.47355 * 59.99633 * 6 4 3 8 8 C 1.52995 * 109.47083 * 180.02562 * 6 4 3 9 9 C 1.53005 * 109.47309 * 180.02562 * 8 6 4 10 10 C 1.53001 * 109.46913 * 299.99777 * 9 8 6 11 11 H 1.08994 * 109.46907 * 299.99892 * 10 9 8 12 12 N 1.46499 * 109.46707 * 179.97438 * 10 9 8 13 13 C 1.38615 * 119.99520 * 155.00374 * 12 10 9 14 14 N 1.29690 * 124.94685 * 179.97438 * 13 12 10 15 15 C 1.32116 * 116.86631 * 179.73596 * 14 13 12 16 16 C 1.50706 * 122.71271 * 180.28580 * 15 14 13 17 17 O 1.42896 * 109.47014 * 150.20704 * 16 15 14 18 18 Si 1.86292 * 109.46958 * 30.20578 * 16 15 14 19 19 C 1.33329 * 114.57709 * 0.47656 * 15 14 13 20 20 C 1.50706 * 125.94840 * 179.82833 * 19 15 14 21 21 S 1.70964 * 124.95234 * 359.97112 * 13 12 10 22 22 C 1.52995 * 109.46951 * 60.00004 * 10 9 8 23 23 C 1.52995 * 109.47307 * 299.99821 * 22 10 9 24 24 H 1.08998 * 109.47506 * 59.99866 * 1 2 3 25 25 H 1.08991 * 109.47400 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46630 * 300.00307 * 1 2 3 27 27 H 1.09000 * 109.46925 * 240.00084 * 2 1 3 28 28 H 1.08994 * 109.47066 * 119.99929 * 2 1 3 29 29 H 1.09001 * 109.47260 * 59.99930 * 8 6 4 30 30 H 1.09004 * 109.46873 * 299.99362 * 8 6 4 31 31 H 1.09001 * 109.47365 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.47021 * 59.99778 * 9 8 6 33 33 H 0.97002 * 120.00496 * 335.00148 * 12 10 9 34 34 H 1.09004 * 109.46471 * 270.20794 * 16 15 14 35 35 H 0.96697 * 114.00201 * 299.99587 * 17 16 15 36 36 H 1.48504 * 110.00358 * 58.68279 * 18 16 15 37 37 H 1.48500 * 110.00111 * 180.02562 * 18 16 15 38 38 H 1.09001 * 109.46953 * 179.71216 * 20 19 15 39 39 H 1.09000 * 109.47318 * 299.70813 * 20 19 15 40 40 H 1.09000 * 109.47161 * 59.71444 * 20 19 15 41 41 H 1.09006 * 109.47685 * 59.99959 * 22 10 9 42 42 H 1.09001 * 109.47256 * 179.97438 * 22 10 9 43 43 H 1.09001 * 109.46967 * 300.00187 * 23 22 10 44 44 H 1.09001 * 109.47363 * 180.02562 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.5851 3.4698 0.8887 8 6 5.4486 2.8573 -0.0023 9 6 6.0335 4.2712 -0.0023 10 6 5.5610 5.0185 -1.2510 11 1 5.8963 4.4866 -2.1413 12 7 6.1205 6.3724 -1.2506 13 6 6.2878 7.0534 -2.4463 14 7 6.7718 8.2515 -2.5575 15 6 6.8658 8.7465 -3.7788 16 6 7.4143 10.1217 -4.0602 17 8 8.0286 10.1347 -5.3503 18 14 8.6792 10.5626 -2.7655 19 6 6.4325 7.9327 -4.7419 20 6 6.4184 8.2373 -6.2177 21 16 5.8864 6.4364 -3.9894 22 6 4.0331 5.0986 -1.2498 23 6 3.4483 3.6848 -1.2498 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 5.7839 2.3251 -0.8925 30 1 5.7852 2.3254 0.8876 31 1 7.1220 4.2142 -0.0027 32 1 5.6982 4.8030 0.8881 33 1 6.3739 6.7924 -0.4137 34 1 6.6022 10.8484 -4.0371 35 1 8.7615 9.5107 -5.4432 36 1 9.7759 9.5614 -2.7651 37 1 9.2273 11.9169 -3.0314 38 1 6.0141 7.3833 -6.7612 39 1 5.7959 9.1129 -6.4021 40 1 7.4349 8.4360 -6.5575 41 1 3.6978 5.6305 -0.3594 42 1 3.6965 5.6313 -2.1392 43 1 3.7836 3.1529 -2.1402 44 1 2.3598 3.7418 -1.2495 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14589460_15704122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:39:23 Heat of formation + Delta-G solvation = -77.638931 kcal Electronic energy + Delta-G solvation = -25704.345609 eV Core-core repulsion = 21942.755407 eV Total energy + Delta-G solvation = -3761.590202 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.83828 -41.08184 -39.82920 -38.00660 -37.66290 -35.99909 -33.09817 -32.59490 -31.86598 -30.86731 -29.04297 -25.83672 -25.36736 -24.31460 -23.88918 -23.36129 -22.07732 -21.23194 -20.34640 -19.13256 -18.73954 -18.03826 -17.67167 -17.61284 -17.28208 -16.71199 -16.51590 -15.83966 -15.71174 -15.43535 -15.15199 -14.95086 -14.57977 -14.30287 -14.23902 -14.04136 -13.81886 -13.71886 -13.49822 -13.46741 -13.29495 -12.94824 -12.87858 -12.65446 -12.59962 -12.49117 -12.34712 -12.19455 -11.96132 -11.64476 -11.56833 -11.51013 -11.32099 -10.93149 -10.65222 -10.51861 -10.02504 -8.61462 -4.78534 -0.01548 0.16734 0.74268 1.10747 1.30096 1.62764 1.67374 1.83598 1.92967 2.00268 3.28514 3.44768 3.47119 3.55853 3.62723 3.87447 3.97265 4.00200 4.04328 4.12624 4.15724 4.23138 4.28208 4.32227 4.32745 4.42174 4.55195 4.60497 4.73164 4.79850 4.81630 4.83318 4.89128 4.90301 5.04160 5.05734 5.07746 5.09921 5.15293 5.23053 5.27271 5.31725 5.45227 5.67017 6.32274 6.45269 6.66639 6.93667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.541 6.541 6 C -0.076 4.076 7 H 0.134 0.866 8 C -0.098 4.098 9 C -0.114 4.114 10 C 0.149 3.851 11 H 0.077 0.923 12 N -0.680 5.680 13 C 0.315 3.685 14 N -0.557 5.557 15 C 0.057 3.943 16 C -0.041 4.041 17 O -0.533 6.533 18 Si 0.784 3.216 19 C -0.259 4.259 20 C -0.057 4.057 21 S 0.112 5.888 22 C -0.128 4.128 23 C -0.102 4.102 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.419 0.581 34 H 0.132 0.868 35 H 0.384 0.616 36 H -0.306 1.306 37 H -0.293 1.293 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.107 -1.462 2.378 4.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.308 3.692 5 O -0.431 6.431 6 C -0.095 4.095 7 H 0.151 0.849 8 C -0.136 4.136 9 C -0.151 4.151 10 C 0.044 3.956 11 H 0.095 0.905 12 N -0.321 5.321 13 C -0.057 4.057 14 N -0.285 5.285 15 C -0.074 4.074 16 C -0.154 4.154 17 O -0.340 6.340 18 Si 0.690 3.310 19 C -0.382 4.382 20 C -0.117 4.117 21 S 0.361 5.639 22 C -0.167 4.167 23 C -0.141 4.141 24 H 0.088 0.912 25 H 0.113 0.887 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.259 0.741 34 H 0.149 0.851 35 H 0.234 0.766 36 H -0.233 1.233 37 H -0.220 1.220 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.890 -1.979 2.547 5.053 hybrid contribution 0.940 -0.100 -0.763 1.215 sum -2.949 -2.079 1.784 4.026 Atomic orbital electron populations 1.21821 0.90760 1.04189 1.03768 1.23225 0.96867 0.79490 1.02369 1.86518 1.24375 1.33281 1.83469 1.24341 0.80512 0.93356 0.70996 1.90675 1.61128 1.44526 1.46757 1.21269 0.96502 0.88251 1.03475 0.84863 1.21352 0.91531 0.96876 1.03822 1.21705 1.01818 0.94389 0.97229 1.21289 0.93583 0.80276 1.00459 0.90505 1.44117 1.68327 1.15768 1.03851 1.23505 0.97083 0.91626 0.93447 1.65739 1.27013 1.11135 1.24641 1.20206 1.01684 0.98822 0.86656 1.24496 1.04727 0.93285 0.92868 1.86596 1.51706 1.65132 1.30560 0.92877 0.76462 0.75151 0.86555 1.25361 1.13659 0.96945 1.02237 1.20147 1.03609 1.01480 0.86427 1.83911 1.64162 1.18312 0.97547 1.21999 0.94008 0.96575 1.04143 1.21450 1.02204 0.94846 0.95567 0.91206 0.88734 0.91210 0.91553 0.91505 0.91659 0.90452 0.89885 0.88647 0.74116 0.85088 0.76617 1.23328 1.22044 0.91730 0.90914 0.89731 0.89311 0.91290 0.91476 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.66 10.29 71.98 0.74 1.40 16 2 C 0.05 0.00 6.19 71.98 0.45 0.45 16 3 O -0.36 -0.62 10.12 -51.41 -0.52 -1.14 16 4 C 0.46 1.07 7.26 71.24 0.52 1.59 16 5 O -0.54 -4.90 15.73 21.98 0.35 -4.55 16 6 C -0.08 0.37 2.63 -11.54 -0.03 0.34 16 7 H 0.13 -1.17 8.14 -2.39 -0.02 -1.19 16 8 C -0.10 0.47 4.49 30.59 0.14 0.61 16 9 C -0.11 0.95 5.39 30.60 0.16 1.12 16 10 C 0.15 -0.93 2.40 44.99 0.11 -0.83 16 11 H 0.08 -0.35 7.26 -2.39 -0.02 -0.36 16 12 N -0.68 2.46 5.23 -330.41 -1.73 0.73 16 13 C 0.31 0.62 8.22 179.32 1.47 2.09 16 14 N -0.56 -2.72 8.95 -189.85 -1.70 -4.42 16 15 C 0.06 0.26 5.91 41.41 0.24 0.51 16 16 C -0.04 -0.11 2.94 71.24 0.21 0.10 16 17 O -0.53 -1.36 10.17 -148.98 -1.51 -2.87 16 18 Si 0.78 2.55 32.09 68.60 2.20 4.75 16 19 C -0.26 -0.93 6.50 24.58 0.16 -0.77 16 20 C -0.06 -0.04 8.92 71.24 0.64 0.60 16 21 S 0.11 0.15 21.69 -56.49 -1.23 -1.08 16 22 C -0.13 0.92 5.51 30.59 0.17 1.08 16 23 C -0.10 0.65 5.14 30.59 0.16 0.81 16 24 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 25 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 26 H 0.07 -0.31 8.14 -2.38 -0.02 -0.33 16 27 H 0.07 0.04 8.13 -2.39 -0.02 0.02 16 28 H 0.07 0.04 8.13 -2.39 -0.02 0.02 16 29 H 0.06 -0.13 8.10 -2.39 -0.02 -0.15 16 30 H 0.08 -0.26 8.10 -2.38 -0.02 -0.28 16 31 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 32 H 0.10 -1.07 8.14 -2.39 -0.02 -1.09 16 33 H 0.42 -2.47 8.73 -92.71 -0.81 -3.28 16 34 H 0.13 0.12 7.96 -2.39 -0.02 0.10 16 35 H 0.38 -0.78 8.12 -74.06 -0.60 -1.38 16 36 H -0.31 -2.93 7.11 99.48 0.71 -2.22 16 37 H -0.29 -2.43 7.11 99.48 0.71 -1.72 16 38 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 39 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 40 H 0.08 -0.06 6.37 -2.39 -0.02 -0.08 16 41 H 0.09 -0.77 8.14 -2.38 -0.02 -0.79 16 42 H 0.07 -0.34 8.04 -2.39 -0.02 -0.36 16 43 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 44 H 0.09 -0.58 8.11 -2.39 -0.02 -0.60 16 Total: 0.00 -15.84 368.47 0.63 -15.21 By element: Atomic # 1 Polarization: -15.36 SS G_CDS: -0.36 Total: -15.72 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 5.13 Total: 9.09 kcal Atomic # 7 Polarization: -0.26 SS G_CDS: -3.43 Total: -3.69 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -1.69 Total: -8.56 kcal Atomic # 14 Polarization: 2.55 SS G_CDS: 2.20 Total: 4.75 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -1.23 Total: -1.08 kcal Total: -15.84 0.63 -15.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14589460_15704122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.430 kcal (2) G-P(sol) polarization free energy of solvation -15.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds