Wall clock time and date at job start Mon Mar 8 2021 04:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46791 * 2 1 4 4 C 1.34227 * 116.99732 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00160 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00100 * 180.02562 * 4 3 2 7 7 H 1.08995 * 109.46922 * 60.00191 * 6 4 3 8 8 C 1.52997 * 109.47467 * 180.02562 * 6 4 3 9 9 C 1.53003 * 109.47241 * 179.97438 * 8 6 4 10 10 C 1.52999 * 109.47087 * 300.00042 * 9 8 6 11 11 H 1.09004 * 109.47434 * 300.00074 * 10 9 8 12 12 N 1.46498 * 109.46963 * 179.97438 * 10 9 8 13 13 C 1.39145 * 119.99604 * 154.72478 * 12 10 9 14 14 N 1.32333 * 119.72042 * 0.02562 * 13 12 10 15 15 C 1.32011 * 121.64547 * 179.75535 * 14 13 12 16 16 C 1.37988 * 120.90209 * 0.52319 * 15 14 13 17 17 C 1.50701 * 120.32771 * 179.76802 * 16 15 14 18 18 O 1.42897 * 109.47110 * 119.97699 * 17 16 15 19 19 Si 1.86300 * 109.46984 * 359.97438 * 17 16 15 20 20 C 1.38907 * 119.34674 * 359.74783 * 16 15 14 21 21 C 1.38446 * 118.48086 * 359.97438 * 20 16 15 22 22 F 1.35101 * 120.46842 * 179.97438 * 21 20 16 23 23 C 1.52997 * 109.47114 * 59.99880 * 10 9 8 24 24 C 1.52999 * 109.46867 * 300.00294 * 6 4 3 25 25 H 1.09006 * 109.46657 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47103 * 300.00027 * 1 2 3 27 27 H 1.09000 * 109.47004 * 60.00275 * 1 2 3 28 28 H 1.08996 * 109.47809 * 239.99778 * 2 1 3 29 29 H 1.09000 * 109.47004 * 119.99725 * 2 1 3 30 30 H 1.09004 * 109.46812 * 60.00081 * 8 6 4 31 31 H 1.08997 * 109.47293 * 299.99977 * 8 6 4 32 32 H 1.08997 * 109.46962 * 180.02562 * 9 8 6 33 33 H 1.08995 * 109.46928 * 60.00077 * 9 8 6 34 34 H 0.97001 * 120.00384 * 335.00737 * 12 10 9 35 35 H 1.08005 * 119.55263 * 180.26965 * 15 14 13 36 36 H 1.09000 * 109.46729 * 239.97928 * 17 16 15 37 37 H 0.96697 * 113.99990 * 300.00427 * 18 17 16 38 38 H 1.48495 * 109.99784 * 179.97438 * 19 17 16 39 39 H 1.48499 * 110.00193 * 301.31743 * 19 17 16 40 40 H 1.07993 * 120.75993 * 180.02562 * 20 16 15 41 41 H 1.09009 * 109.47238 * 59.99946 * 23 10 9 42 42 H 1.08997 * 109.47293 * 179.97438 * 23 10 9 43 43 H 1.08995 * 109.47266 * 299.99687 * 24 6 4 44 44 H 1.09000 * 109.47204 * 59.99745 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 1 3.5844 3.4693 0.8912 8 6 5.4485 2.8575 0.0010 9 6 6.0333 4.2714 0.0010 10 6 5.5616 5.0184 -1.2482 11 1 5.8975 4.4863 -2.1382 12 7 6.1210 6.3723 -1.2478 13 6 6.2951 7.0534 -2.4487 14 7 5.9530 6.4729 -3.5876 15 6 6.0972 7.0857 -4.7480 16 6 6.6239 8.3593 -4.8161 17 6 6.7877 9.0447 -6.1482 18 8 6.0217 10.2510 -6.1606 19 14 6.1909 7.9161 -7.5049 20 6 7.0013 9.0035 -3.6448 21 6 6.8332 8.3387 -2.4421 22 9 7.1871 8.9273 -1.2787 23 6 4.0337 5.0983 -1.2480 24 6 3.4495 3.6848 -1.2480 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.7844 2.3258 -0.8893 31 1 5.7846 2.3250 0.8907 32 1 7.1218 4.2144 0.0005 33 1 5.6974 4.8035 0.8910 34 1 6.3739 6.7925 -0.4109 35 1 5.8028 6.5818 -5.6568 36 1 7.8398 9.2807 -6.3084 37 1 5.0740 10.1165 -6.0234 38 1 6.3465 8.5807 -8.8237 39 1 6.9583 6.6449 -7.4825 40 1 7.4156 10.0005 -3.6716 41 1 3.6978 5.6305 -0.3580 42 1 3.6977 5.6309 -2.1377 43 1 3.7857 3.1530 -2.1380 44 1 2.3610 3.7418 -1.2484 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14589460_17656566.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:39:26 Heat of formation + Delta-G solvation = -127.177259 kcal Electronic energy + Delta-G solvation = -27631.870316 eV Core-core repulsion = 23465.063368 eV Total energy + Delta-G solvation = -4166.806948 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.93724 -41.85045 -41.40252 -39.65648 -38.00678 -37.64250 -36.00879 -33.30421 -32.83346 -32.09076 -31.80141 -30.13841 -26.63515 -25.59033 -24.62620 -23.73238 -23.50598 -22.81042 -21.82589 -20.94826 -19.29205 -18.72393 -18.46515 -18.31340 -17.65820 -17.64132 -17.48028 -16.98804 -16.42874 -16.06058 -15.93928 -15.62776 -15.37265 -15.34802 -14.91407 -14.73653 -14.48109 -14.34453 -14.20289 -13.98465 -13.75428 -13.51148 -13.43308 -13.23693 -12.93709 -12.70367 -12.55139 -12.46682 -12.40510 -12.17312 -12.11890 -11.81606 -11.56622 -11.47334 -11.25755 -11.06824 -10.68434 -10.63194 -10.40005 -8.74288 -4.96829 -0.06907 0.12397 1.10883 1.32795 1.63377 1.66524 1.99027 2.00535 2.56160 3.04211 3.28315 3.48119 3.51740 3.60131 3.65953 3.67796 3.87368 3.95463 3.99566 4.00702 4.04669 4.11434 4.20404 4.32092 4.33949 4.37764 4.45206 4.45436 4.48550 4.69244 4.75289 4.77711 4.84937 4.89923 4.95518 5.00090 5.04843 5.11812 5.12822 5.17495 5.25968 5.32260 5.44182 5.48024 5.99976 6.22179 6.66949 6.80321 6.98387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.464 3.536 5 O -0.542 6.542 6 C -0.076 4.076 7 H 0.131 0.869 8 C -0.095 4.095 9 C -0.118 4.118 10 C 0.156 3.844 11 H 0.080 0.920 12 N -0.709 5.709 13 C 0.385 3.615 14 N -0.524 5.524 15 C 0.147 3.853 16 C -0.207 4.207 17 C -0.058 4.058 18 O -0.556 6.556 19 Si 0.774 3.226 20 C -0.041 4.041 21 C -0.038 4.038 22 F -0.141 7.141 23 C -0.118 4.118 24 C -0.100 4.100 25 H 0.095 0.905 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.416 0.584 35 H 0.181 0.819 36 H 0.110 0.890 37 H 0.396 0.604 38 H -0.298 1.298 39 H -0.280 1.280 40 H 0.152 0.848 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.855 0.366 0.456 4.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.309 3.691 5 O -0.432 6.432 6 C -0.094 4.094 7 H 0.149 0.851 8 C -0.134 4.134 9 C -0.156 4.156 10 C 0.052 3.948 11 H 0.098 0.902 12 N -0.342 5.342 13 C 0.146 3.854 14 N -0.241 5.241 15 C -0.010 4.010 16 C -0.212 4.212 17 C -0.169 4.169 18 O -0.364 6.364 19 Si 0.679 3.321 20 C -0.067 4.067 21 C -0.064 4.064 22 F -0.120 7.120 23 C -0.156 4.156 24 C -0.138 4.138 25 H 0.113 0.887 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.254 0.746 35 H 0.198 0.802 36 H 0.128 0.872 37 H 0.246 0.754 38 H -0.225 1.225 39 H -0.207 1.207 40 H 0.170 0.830 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.294 -1.137 -0.273 4.451 hybrid contribution 1.294 1.006 0.879 1.860 sum -3.001 -0.131 0.606 3.064 Atomic orbital electron populations 1.21821 0.90668 1.04210 1.03790 1.23236 0.96932 0.79468 1.02363 1.86517 1.24292 1.33322 1.83463 1.24323 0.80534 0.93297 0.70951 1.90671 1.61149 1.44514 1.46817 1.21256 0.96413 0.88313 1.03467 0.85146 1.21318 0.91672 0.96890 1.03491 1.21752 1.01403 0.94677 0.97797 1.21008 0.93238 0.81151 0.99413 0.90236 1.44700 1.68079 1.16863 1.04531 1.18553 0.91266 0.87145 0.88415 1.67357 1.23272 1.36361 0.97151 1.22680 0.92260 0.90992 0.95099 1.20969 1.06863 0.96914 0.96463 1.24969 0.99498 0.93099 0.99303 1.86475 1.24682 1.29901 1.95316 0.93811 0.89332 0.74813 0.74097 1.21410 0.95089 1.00474 0.89765 1.18139 1.11489 0.93684 0.83088 1.91467 1.90562 1.83787 1.46167 1.21838 0.94448 0.96088 1.03254 1.21414 1.01910 0.95153 0.95300 0.88686 0.91219 0.91149 0.91536 0.91544 0.91851 0.90758 0.90520 0.89362 0.74576 0.80214 0.87228 0.75402 1.22546 1.20724 0.82986 0.90487 0.91315 0.91666 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.57 10.29 71.98 0.74 1.31 16 2 C 0.05 0.05 6.19 71.98 0.45 0.50 16 3 O -0.36 -1.10 10.12 -51.39 -0.52 -1.62 16 4 C 0.46 1.90 7.26 71.24 0.52 2.42 16 5 O -0.54 -5.82 15.73 21.96 0.35 -5.47 16 6 C -0.08 0.19 2.63 -11.54 -0.03 0.16 16 7 H 0.13 -0.81 8.14 -2.39 -0.02 -0.83 16 8 C -0.10 0.19 4.49 30.59 0.14 0.32 16 9 C -0.12 0.59 5.39 30.59 0.16 0.76 16 10 C 0.16 -0.44 2.47 44.99 0.11 -0.32 16 11 H 0.08 0.05 7.53 -2.39 -0.02 0.04 16 12 N -0.71 0.92 5.22 -324.29 -1.69 -0.77 16 13 C 0.38 0.87 7.47 133.09 0.99 1.86 16 14 N -0.52 -1.13 9.20 -193.02 -1.78 -2.90 16 15 C 0.15 -0.17 9.84 84.61 0.83 0.66 16 16 C -0.21 0.26 5.40 -19.76 -0.11 0.15 16 17 C -0.06 0.16 2.84 71.24 0.20 0.36 16 18 O -0.56 1.04 12.78 -148.98 -1.90 -0.86 16 19 Si 0.77 -3.40 29.82 68.60 2.05 -1.36 16 20 C -0.04 -0.04 9.75 22.48 0.22 0.17 16 21 C -0.04 -0.11 7.35 22.59 0.17 0.05 16 22 F -0.14 -0.62 16.65 44.97 0.75 0.13 16 23 C -0.12 0.48 5.51 30.58 0.17 0.65 16 24 C -0.10 0.37 5.13 30.58 0.16 0.53 16 25 H 0.09 -0.62 8.14 -2.38 -0.02 -0.64 16 26 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 27 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 28 H 0.07 0.10 8.13 -2.39 -0.02 0.08 16 29 H 0.07 0.10 8.13 -2.39 -0.02 0.08 16 30 H 0.06 0.07 8.10 -2.39 -0.02 0.05 16 31 H 0.07 -0.05 8.10 -2.39 -0.02 -0.07 16 32 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 33 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 34 H 0.42 -1.45 8.07 -92.71 -0.75 -2.20 16 35 H 0.18 -1.08 4.88 -2.91 -0.01 -1.10 16 36 H 0.11 -0.19 7.96 -2.39 -0.02 -0.20 16 37 H 0.40 -3.90 8.70 -74.06 -0.64 -4.54 16 38 H -0.30 -1.03 7.11 99.48 0.71 -0.32 16 39 H -0.28 -0.02 7.11 99.48 0.71 0.68 16 40 H 0.15 -0.03 8.06 -2.91 -0.02 -0.05 16 41 H 0.08 -0.43 8.14 -2.38 -0.02 -0.45 16 42 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 43 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 44 H 0.09 -0.38 8.11 -2.39 -0.02 -0.40 16 Total: 0.00 -16.69 364.79 1.64 -15.05 By element: Atomic # 1 Polarization: -11.45 SS G_CDS: -0.33 Total: -11.77 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 4.72 Total: 9.57 kcal Atomic # 7 Polarization: -0.21 SS G_CDS: -3.47 Total: -3.67 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -2.08 Total: -7.95 kcal Atomic # 9 Polarization: -0.62 SS G_CDS: 0.75 Total: 0.13 kcal Atomic # 14 Polarization: -3.40 SS G_CDS: 2.05 Total: -1.36 kcal Total: -16.69 1.64 -15.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14589460_17656566.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.124 kcal (2) G-P(sol) polarization free energy of solvation -16.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds