Wall clock time and date at job start Mon Mar 8 2021 06:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86295 * 109.46915 * 2 1 4 4 C 1.50699 * 109.46972 * 119.99751 * 2 1 3 5 5 C 1.38607 * 120.71936 * 244.72450 * 4 2 1 6 6 N 1.32279 * 119.19597 * 179.71715 * 5 4 2 7 7 C 1.32496 * 120.73910 * 0.56466 * 6 5 4 8 8 N 1.38406 * 119.21774 * 179.72375 * 7 6 5 9 9 C 1.46497 * 120.00093 * 359.97438 * 8 7 6 10 10 H 1.09003 * 112.84835 * 336.19525 * 9 8 7 11 11 C 1.53782 * 113.61512 * 107.49468 * 9 8 7 12 12 C 1.53783 * 87.07992 * 139.98308 * 11 9 8 13 13 H 1.08999 * 113.61048 * 89.12130 * 12 11 9 14 14 C 1.52998 * 113.69251 * 220.00989 * 12 11 9 15 15 N 1.46501 * 109.47493 * 272.53823 * 14 12 11 16 16 C 1.34425 * 126.82704 * 124.99471 * 15 14 12 17 17 N 1.30827 * 108.08040 * 179.97438 * 16 15 14 18 18 C 1.33244 * 109.82872 * 0.02562 * 17 16 15 19 19 N 1.30713 * 108.94235 * 359.75206 * 18 17 16 20 20 C 1.53777 * 87.08238 * 334.57000 * 12 11 9 21 21 N 1.32492 * 121.56625 * 359.70895 * 7 6 5 22 22 C 1.32279 * 120.74224 * 359.97438 * 21 7 6 23 23 H 0.96696 * 114.00036 * 60.00219 * 1 2 3 24 24 H 1.09000 * 109.47187 * 239.99852 * 2 1 3 25 25 H 1.48504 * 110.00018 * 298.67819 * 3 2 1 26 26 H 1.48496 * 110.00262 * 59.99721 * 3 2 1 27 27 H 1.07995 * 120.40325 * 0.02562 * 5 4 2 28 28 H 0.96995 * 119.99880 * 179.97438 * 8 7 6 29 29 H 1.09001 * 113.62086 * 254.53354 * 11 9 8 30 30 H 1.09007 * 113.61323 * 25.44011 * 11 9 8 31 31 H 1.09006 * 109.47333 * 32.53529 * 14 12 11 32 32 H 1.09001 * 109.47480 * 152.53465 * 14 12 11 33 33 H 1.07997 * 125.96118 * 0.02562 * 16 15 14 34 34 H 1.08002 * 125.52703 * 179.97438 * 18 17 16 35 35 H 1.09009 * 113.61521 * 270.88624 * 20 12 11 36 36 H 1.09003 * 113.61729 * 139.98047 * 20 12 11 37 37 H 1.07997 * 120.40149 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6470 -0.0262 2.2005 6 7 3.0687 -0.6783 3.2713 7 6 2.8235 -1.9722 3.4165 8 7 3.2845 -2.6245 4.5468 9 6 4.0343 -1.8847 5.5650 10 1 4.5155 -0.9901 5.1695 11 6 3.2390 -1.6382 6.8579 12 6 4.5401 -1.9361 7.6217 13 1 5.1591 -1.0548 7.7899 14 6 4.3322 -2.7667 8.8897 15 7 4.0411 -1.8754 10.0153 16 6 2.9740 -1.9296 10.8310 17 7 3.0826 -0.9634 11.7064 18 6 4.2005 -0.2739 11.4822 19 7 4.8241 -0.7975 10.4596 20 6 4.9721 -2.7691 6.4035 21 7 2.1473 -2.6565 2.5055 22 6 1.6922 -2.0632 1.4143 23 1 -0.3933 0.4417 -0.7650 24 1 1.7924 -0.5139 -0.8900 25 1 1.5879 2.4585 -1.2243 26 1 1.5614 2.4679 1.2084 27 1 2.8535 1.0276 2.0858 28 1 3.1111 -3.5715 4.6648 29 1 2.8931 -0.6105 6.9687 30 1 2.4521 -2.3719 7.0331 31 1 3.4965 -3.4511 8.7428 32 1 5.2361 -3.3375 9.1025 33 1 2.1681 -2.6462 10.7742 34 1 4.5385 0.5771 12.0548 35 1 4.6589 -3.8120 6.4544 36 1 6.0254 -2.6544 6.1473 37 1 1.1413 -2.6262 0.6755 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14643980_12175864.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:34:14 Heat of formation + Delta-G solvation = 158.150514 kcal Electronic energy + Delta-G solvation = -21787.128602 eV Core-core repulsion = 18376.894448 eV Total energy + Delta-G solvation = -3410.234153 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.98957 -42.12444 -40.40000 -38.07087 -36.13861 -34.79021 -34.47593 -32.26523 -32.15257 -29.04340 -26.83062 -26.59794 -25.94570 -24.24348 -23.05914 -22.94058 -22.16884 -20.70870 -19.28740 -18.85848 -18.49175 -18.18805 -16.91581 -16.70417 -16.43477 -16.32419 -16.09785 -15.72353 -15.64667 -15.32015 -15.06438 -14.61285 -14.55483 -13.96393 -13.69927 -13.49675 -13.37515 -13.30410 -12.77413 -12.40976 -12.24477 -11.92597 -11.87586 -11.77440 -11.59608 -11.15921 -10.97759 -10.79529 -10.66870 -10.51346 -10.05002 -9.10669 -4.93808 0.01661 0.11123 0.69691 1.29077 1.44136 1.58404 1.82906 1.94403 2.00821 2.71597 3.11742 3.38256 3.39551 3.46470 3.48968 3.53370 3.62793 3.71917 3.81138 3.88801 3.91949 4.13141 4.14980 4.18535 4.40584 4.50777 4.55682 4.68424 4.71618 4.75704 4.79365 4.96136 5.03408 5.13814 5.30588 5.40020 5.46013 5.76283 5.94146 6.02444 6.39584 6.62531 7.12851 7.25209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.057 4.057 3 Si 0.751 3.249 4 C -0.248 4.248 5 C 0.190 3.810 6 N -0.580 5.580 7 C 0.550 3.450 8 N -0.677 5.677 9 C 0.137 3.863 10 H 0.104 0.896 11 C -0.144 4.144 12 C -0.112 4.112 13 H 0.086 0.914 14 C 0.135 3.865 15 N -0.377 5.377 16 C 0.255 3.745 17 N -0.586 5.586 18 C 0.186 3.814 19 N -0.348 5.348 20 C -0.119 4.119 21 N -0.587 5.587 22 C 0.213 3.787 23 H 0.397 0.603 24 H 0.105 0.895 25 H -0.280 1.280 26 H -0.299 1.299 27 H 0.181 0.819 28 H 0.421 0.579 29 H 0.047 0.953 30 H 0.099 0.901 31 H 0.137 0.863 32 H 0.102 0.898 33 H 0.256 0.744 34 H 0.232 0.768 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.765 -3.597 -4.403 5.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.168 4.168 3 Si 0.657 3.343 4 C -0.256 4.256 5 C 0.023 3.977 6 N -0.303 5.303 7 C 0.193 3.807 8 N -0.313 5.313 9 C 0.032 3.968 10 H 0.122 0.878 11 C -0.184 4.184 12 C -0.132 4.132 13 H 0.105 0.895 14 C 0.015 3.985 15 N -0.167 5.167 16 C -0.041 4.041 17 N -0.314 5.314 18 C -0.117 4.117 19 N -0.177 5.177 20 C -0.158 4.158 21 N -0.309 5.309 22 C 0.046 3.954 23 H 0.248 0.752 24 H 0.123 0.877 25 H -0.207 1.207 26 H -0.227 1.227 27 H 0.197 0.803 28 H 0.261 0.739 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.155 0.845 32 H 0.120 0.880 33 H 0.272 0.728 34 H 0.248 0.752 35 H 0.134 0.866 36 H 0.104 0.896 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 2.577 -3.203 -2.981 5.079 hybrid contribution -1.749 0.212 -1.155 2.106 sum 0.829 -2.991 -4.136 5.171 Atomic orbital electron populations 1.86544 1.18523 1.80606 1.51310 1.24545 0.83918 1.10976 0.97344 0.94380 0.90345 0.72701 0.76910 1.20810 1.07405 0.96817 1.00575 1.23112 0.88484 0.99997 0.86113 1.67946 1.28188 1.08662 1.25486 1.19736 0.87452 0.85837 0.87634 1.44224 1.57769 1.12135 1.17160 1.22487 0.92770 0.96432 0.85144 0.87797 1.23603 0.97291 1.01859 0.95608 1.22496 0.98157 0.99734 0.92770 0.89534 1.22205 1.05529 0.89818 0.80969 1.50740 1.16704 1.23740 1.25536 1.26837 0.92846 0.97578 0.86831 1.70542 1.22199 1.09940 1.28698 1.26455 0.90011 1.00657 0.94538 1.77947 1.20011 1.02840 1.16875 1.23341 1.00393 0.99930 0.92103 1.68017 1.17323 1.40533 1.05042 1.23191 0.88930 0.91615 0.91696 0.75185 0.87738 1.20671 1.22686 0.80301 0.73937 0.93376 0.88274 0.84491 0.87990 0.72825 0.75192 0.86615 0.89578 0.79656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.14 12.82 -148.98 -1.91 -1.77 16 2 C -0.06 0.17 2.82 71.24 0.20 0.37 16 3 Si 0.75 -2.72 29.91 68.60 2.05 -0.67 16 4 C -0.25 -0.43 5.40 -19.69 -0.11 -0.53 16 5 C 0.19 0.61 9.92 84.71 0.84 1.45 16 6 N -0.58 -3.75 9.13 -197.99 -1.81 -5.56 16 7 C 0.55 3.16 8.43 261.49 2.20 5.36 16 8 N -0.68 0.17 5.50 -327.93 -1.80 -1.64 16 9 C 0.14 -0.33 4.25 45.52 0.19 -0.14 16 10 H 0.10 0.17 7.37 -2.39 -0.02 0.15 16 11 C -0.14 0.44 7.43 31.12 0.23 0.67 16 12 C -0.11 0.58 3.88 -10.27 -0.04 0.54 16 13 H 0.09 0.02 8.01 -2.39 -0.02 0.00 16 14 C 0.14 -1.00 6.39 86.38 0.55 -0.45 16 15 N -0.38 -0.12 3.69 -352.06 -1.30 -1.42 16 16 C 0.26 -0.03 12.63 180.36 2.28 2.25 16 17 N -0.59 -4.00 11.19 -204.01 -2.28 -6.28 16 18 C 0.19 1.13 13.03 180.76 2.36 3.48 16 19 N -0.35 -2.31 12.46 -61.24 -0.76 -3.08 16 20 C -0.12 0.96 7.39 31.12 0.23 1.19 16 21 N -0.59 -3.59 10.46 -197.98 -2.07 -5.66 16 22 C 0.21 0.65 10.99 84.71 0.93 1.58 16 23 H 0.40 -3.29 8.74 -74.06 -0.65 -3.94 16 24 H 0.10 -0.84 7.96 -2.39 -0.02 -0.86 16 25 H -0.28 -0.09 7.11 99.48 0.71 0.62 16 26 H -0.30 -1.23 7.07 99.48 0.70 -0.53 16 27 H 0.18 -0.21 5.04 -2.91 -0.01 -0.23 16 28 H 0.42 -1.62 8.84 -92.71 -0.82 -2.44 16 29 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.10 -0.55 7.90 -2.38 -0.02 -0.57 16 31 H 0.14 -1.95 7.80 -2.38 -0.02 -1.97 16 32 H 0.10 -0.88 8.14 -2.39 -0.02 -0.90 16 33 H 0.26 -2.58 8.06 -2.91 -0.02 -2.60 16 34 H 0.23 0.05 8.06 -2.91 -0.02 0.03 16 35 H 0.12 -1.44 8.08 -2.38 -0.02 -1.46 16 36 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H 0.19 -0.32 8.06 -2.91 -0.02 -0.35 16 Total: 0.00 -25.57 320.22 -0.33 -25.90 By element: Atomic # 1 Polarization: -15.29 SS G_CDS: -0.31 Total: -15.60 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 9.87 Total: 15.77 kcal Atomic # 7 Polarization: -13.61 SS G_CDS: -10.03 Total: -23.63 kcal Atomic # 8 Polarization: 0.14 SS G_CDS: -1.91 Total: -1.77 kcal Atomic # 14 Polarization: -2.72 SS G_CDS: 2.05 Total: -0.67 kcal Total: -25.57 -0.33 -25.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14643980_12175864.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.055 kcal (2) G-P(sol) polarization free energy of solvation -25.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds