Wall clock time and date at job start Mon Mar 8 2021 06:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.38836 * 120.33483 * 65.00185 * 4 2 1 6 6 C 1.38340 * 118.50131 * 179.97438 * 5 4 2 7 7 C 1.39097 * 119.10152 * 0.02562 * 6 5 4 8 8 N 1.39003 * 119.70486 * 180.02562 * 7 6 5 9 9 C 1.46498 * 120.00128 * 359.97438 * 8 7 6 10 10 H 1.08997 * 112.85513 * 336.20121 * 9 8 7 11 11 C 1.53786 * 113.60942 * 107.50783 * 9 8 7 12 12 C 1.53786 * 87.08243 * 139.98325 * 11 9 8 13 13 H 1.09003 * 113.61359 * 89.11225 * 12 11 9 14 14 C 1.52993 * 113.61445 * 220.02002 * 12 11 9 15 15 N 1.46505 * 109.47033 * 272.49186 * 14 12 11 16 16 C 1.34425 * 126.82118 * 124.70741 * 15 14 12 17 17 N 1.30833 * 108.07611 * 179.89328 * 16 15 14 18 18 C 1.33235 * 109.82922 * 0.38778 * 17 16 15 19 19 N 1.30710 * 108.94646 * 359.75799 * 18 17 16 20 20 C 1.53779 * 113.61623 * 204.99966 * 9 8 7 21 21 N 1.32424 * 120.59105 * 0.02562 * 7 6 5 22 22 C 1.31952 * 121.61661 * 359.66103 * 21 7 6 23 23 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 24 24 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 25 25 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 26 26 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 27 27 H 1.08000 * 120.74883 * 359.97438 * 5 4 2 28 28 H 1.08002 * 120.44757 * 179.97438 * 6 5 4 29 29 H 0.96997 * 119.99814 * 180.02562 * 8 7 6 30 30 H 1.09001 * 113.61063 * 254.52338 * 11 9 8 31 31 H 1.08995 * 113.61991 * 25.43486 * 11 9 8 32 32 H 1.09000 * 109.47408 * 32.49152 * 14 12 11 33 33 H 1.09002 * 109.47287 * 152.49651 * 14 12 11 34 34 H 1.08001 * 125.96173 * 0.04338 * 16 15 14 35 35 H 1.08005 * 125.53031 * 179.79651 * 18 17 16 36 36 H 1.08993 * 113.61803 * 334.57549 * 20 9 8 37 37 H 1.09007 * 113.61285 * 105.38834 * 20 9 8 38 38 H 1.07998 * 119.56648 * 180.31204 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 1.6874 -2.0659 1.4063 6 6 2.1663 -2.6799 2.5498 7 6 2.8712 -1.9228 3.4796 8 7 3.3585 -2.5271 4.6327 9 6 3.1282 -3.9552 4.8646 10 1 2.2601 -4.3367 4.3273 11 6 4.3894 -4.8182 4.6931 12 6 3.9147 -5.6161 5.9192 13 1 3.2622 -6.4528 5.6696 14 6 5.0463 -6.0066 6.8719 15 7 5.6272 -7.2815 6.4436 16 6 6.9199 -7.5253 6.1671 17 7 7.0313 -8.7827 5.8231 18 6 5.8354 -9.3689 5.8596 19 7 4.9432 -8.4901 6.2341 20 6 3.1555 -4.3502 6.3505 21 7 3.0824 -0.6314 3.2762 22 6 2.6427 -0.0210 2.1921 23 1 -0.3934 0.4418 0.7650 24 1 1.7924 -0.5139 -0.8899 25 1 1.5616 2.4678 -1.2086 26 1 1.5878 2.4586 1.2241 27 1 1.1364 -2.6282 0.6671 28 1 1.9943 -3.7327 2.7186 29 1 3.8503 -2.0031 5.2841 30 1 4.3987 -5.3994 3.7710 31 1 5.3180 -4.2725 4.8602 32 1 5.8153 -5.2342 6.8587 33 1 4.6512 -6.1088 7.8827 34 1 7.7263 -6.8090 6.2220 35 1 5.6356 -10.4028 5.6195 36 1 3.7466 -3.6765 6.9707 37 1 2.1684 -4.5520 6.7669 38 1 2.8380 1.0327 2.0575 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14643980_13915762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:34:17 Heat of formation + Delta-G solvation = 138.621757 kcal Electronic energy + Delta-G solvation = -21643.776610 eV Core-core repulsion = 18298.121537 eV Total energy + Delta-G solvation = -3345.655073 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.01948 -41.58229 -40.47760 -38.04087 -36.06885 -34.49134 -33.38773 -32.15304 -31.36072 -29.12525 -27.04212 -26.49482 -24.99529 -24.29120 -22.99106 -22.83897 -21.99047 -20.83303 -18.85381 -18.62047 -18.40924 -17.65568 -16.90777 -16.68249 -16.44367 -16.29780 -16.13557 -15.72687 -15.41720 -15.34027 -15.07852 -14.57140 -14.36025 -14.05721 -13.89716 -13.77279 -13.44670 -13.30897 -12.87332 -12.54124 -12.41146 -12.10073 -11.93415 -11.80755 -11.17556 -10.94421 -10.78964 -10.74753 -10.60285 -10.55049 -10.39414 -8.76950 -4.96898 0.20659 0.39118 0.65607 1.27361 1.28763 1.57856 1.95618 1.99215 2.03938 2.78855 3.11244 3.18792 3.25367 3.38153 3.38600 3.49075 3.52313 3.67305 3.75007 3.84241 3.95559 3.97316 4.03905 4.14763 4.26585 4.29327 4.37313 4.46275 4.49839 4.55137 4.70524 4.73128 4.73949 4.96545 5.04291 5.26194 5.28804 5.46528 5.47882 5.79345 5.93345 6.40531 6.45908 7.11293 7.12450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.060 4.060 3 Si 0.680 3.320 4 C -0.233 4.233 5 C -0.005 4.005 6 C -0.239 4.239 7 C 0.407 3.593 8 N -0.711 5.711 9 C 0.133 3.867 10 H 0.112 0.888 11 C -0.150 4.150 12 C -0.121 4.121 13 H 0.110 0.890 14 C 0.141 3.859 15 N -0.378 5.378 16 C 0.254 3.746 17 N -0.547 5.547 18 C 0.199 3.801 19 N -0.318 5.318 20 C -0.136 4.136 21 N -0.540 5.540 22 C 0.155 3.845 23 H 0.375 0.625 24 H 0.116 0.884 25 H -0.256 1.256 26 H -0.258 1.258 27 H 0.136 0.864 28 H 0.133 0.867 29 H 0.406 0.594 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.218 0.782 35 H 0.217 0.783 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.692 1.234 1.885 2.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.338 6.338 2 C -0.170 4.170 3 Si 0.581 3.419 4 C -0.238 4.238 5 C -0.031 4.031 6 C -0.264 4.264 7 C 0.172 3.828 8 N -0.343 5.343 9 C 0.027 3.973 10 H 0.130 0.870 11 C -0.189 4.189 12 C -0.141 4.141 13 H 0.128 0.872 14 C 0.019 3.981 15 N -0.169 5.169 16 C -0.043 4.043 17 N -0.274 5.274 18 C -0.104 4.104 19 N -0.146 5.146 20 C -0.175 4.175 21 N -0.256 5.256 22 C -0.003 4.003 23 H 0.223 0.777 24 H 0.134 0.866 25 H -0.180 1.180 26 H -0.183 1.183 27 H 0.153 0.847 28 H 0.151 0.849 29 H 0.243 0.757 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.122 0.878 33 H 0.111 0.889 34 H 0.234 0.766 35 H 0.233 0.767 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.488 1.795 1.999 3.071 hybrid contribution -1.191 -0.294 0.255 1.253 sum 0.297 1.501 2.254 2.724 Atomic orbital electron populations 1.86598 1.17958 1.79925 1.49311 1.24765 0.83696 1.10619 0.97969 0.95109 0.91661 0.74678 0.80419 1.20930 1.06863 0.95952 1.00029 1.21208 0.93067 0.93425 0.95372 1.21481 1.06620 1.01423 0.96847 1.18429 0.89057 0.88424 0.86879 1.44497 1.60245 1.08672 1.20857 1.22470 0.98493 0.79528 0.96802 0.87040 1.23678 0.98914 0.97766 0.98582 1.22704 0.97331 0.97864 0.96181 0.87174 1.21865 0.96845 0.80383 0.99033 1.50560 1.06643 1.09528 1.50146 1.26107 0.87711 0.94983 0.95523 1.70568 1.26485 1.05710 1.24610 1.26060 0.85830 1.00766 0.97721 1.78027 1.21144 0.91189 1.24264 1.23375 1.01816 0.96142 0.96136 1.67175 1.25956 1.08974 1.23517 1.22283 0.91337 0.99061 0.87591 0.77733 0.86583 1.18047 1.18327 0.84657 0.84942 0.75731 0.90773 0.89197 0.87847 0.88881 0.76613 0.76657 0.88875 0.89792 0.82770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.60 12.84 -35.23 -0.45 -1.06 16 2 C -0.06 0.02 2.82 36.01 0.10 0.12 16 3 Si 0.68 -0.71 29.90 -169.99 -5.08 -5.79 16 4 C -0.23 -0.08 5.36 -104.46 -0.56 -0.64 16 5 C 0.00 0.00 9.83 -39.32 -0.39 -0.39 16 6 C -0.24 -0.06 9.29 -39.23 -0.36 -0.43 16 7 C 0.41 0.40 7.65 -155.01 -1.19 -0.79 16 8 N -0.71 1.05 5.53 -53.15 -0.29 0.76 16 9 C 0.13 -0.42 4.03 -67.12 -0.27 -0.69 16 10 H 0.11 -0.34 6.10 -51.93 -0.32 -0.66 16 11 C -0.15 0.50 7.43 -25.91 -0.19 0.30 16 12 C -0.12 0.44 3.88 -89.81 -0.35 0.09 16 13 H 0.11 -0.19 8.00 -51.93 -0.42 -0.61 16 14 C 0.14 -0.53 6.39 -4.04 -0.03 -0.56 16 15 N -0.38 0.16 3.69 -62.63 -0.23 -0.07 16 16 C 0.25 -0.11 12.63 -90.66 -1.14 -1.25 16 17 N -0.55 -1.39 11.19 -15.83 -0.18 -1.56 16 18 C 0.20 0.36 13.03 -91.82 -1.20 -0.83 16 19 N -0.32 -0.69 12.45 29.29 0.36 -0.32 16 20 C -0.14 0.61 7.39 -25.92 -0.19 0.42 16 21 N -0.54 -1.19 10.39 -12.44 -0.13 -1.32 16 22 C 0.15 0.14 9.84 -17.57 -0.17 -0.03 16 23 H 0.38 -0.57 8.70 45.56 0.40 -0.17 16 24 H 0.12 -0.13 7.96 -51.93 -0.41 -0.54 16 25 H -0.26 -0.58 7.11 56.52 0.40 -0.17 16 26 H -0.26 -0.21 7.02 56.52 0.40 0.18 16 27 H 0.14 -0.09 8.06 -52.49 -0.42 -0.52 16 28 H 0.13 -0.18 6.03 -52.49 -0.32 -0.50 16 29 H 0.41 -0.87 8.85 -40.82 -0.36 -1.23 16 30 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 31 H 0.09 -0.33 7.90 -51.93 -0.41 -0.74 16 32 H 0.10 -0.65 7.79 -51.93 -0.40 -1.06 16 33 H 0.09 -0.37 8.14 -51.93 -0.42 -0.80 16 34 H 0.22 -1.02 8.06 -52.49 -0.42 -1.44 16 35 H 0.22 -0.26 8.06 -52.48 -0.42 -0.68 16 36 H 0.09 -0.51 8.08 -51.93 -0.42 -0.93 16 37 H 0.08 -0.35 8.14 -51.92 -0.42 -0.77 16 38 H 0.16 -0.14 4.85 -52.49 -0.25 -0.39 16 LS Contribution 322.53 15.07 4.86 4.86 Total: 0.00 -9.03 322.53 -11.73 -20.77 By element: Atomic # 1 Polarization: -6.92 SS G_CDS: -4.65 Total: -11.58 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -5.94 Total: -4.68 kcal Atomic # 7 Polarization: -2.05 SS G_CDS: -0.47 Total: -2.52 kcal Atomic # 8 Polarization: -0.60 SS G_CDS: -0.45 Total: -1.06 kcal Atomic # 14 Polarization: -0.71 SS G_CDS: -5.08 Total: -5.79 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -9.03 -11.73 -20.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14643980_13915762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.390 kcal (2) G-P(sol) polarization free energy of solvation -9.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds