Wall clock time and date at job start Mon Mar 8 2021 06:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.38836 * 120.33483 * 65.00185 * 4 2 1 6 6 C 1.38340 * 118.50131 * 179.97438 * 5 4 2 7 7 C 1.39097 * 119.10152 * 0.02562 * 6 5 4 8 8 N 1.39003 * 119.70486 * 180.02562 * 7 6 5 9 9 C 1.46498 * 120.00128 * 359.97438 * 8 7 6 10 10 H 1.08997 * 112.85513 * 336.20121 * 9 8 7 11 11 C 1.53786 * 113.60942 * 107.50783 * 9 8 7 12 12 C 1.53786 * 87.08243 * 139.98325 * 11 9 8 13 13 H 1.09003 * 113.61359 * 89.11225 * 12 11 9 14 14 C 1.52993 * 113.61445 * 220.02002 * 12 11 9 15 15 N 1.46505 * 109.47033 * 272.49186 * 14 12 11 16 16 C 1.34425 * 126.82118 * 124.70741 * 15 14 12 17 17 N 1.30833 * 108.07611 * 179.89328 * 16 15 14 18 18 C 1.33235 * 109.82922 * 0.38778 * 17 16 15 19 19 N 1.30710 * 108.94646 * 359.75799 * 18 17 16 20 20 C 1.53779 * 113.61623 * 204.99966 * 9 8 7 21 21 N 1.32424 * 120.59105 * 0.02562 * 7 6 5 22 22 C 1.31952 * 121.61661 * 359.66103 * 21 7 6 23 23 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 24 24 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 25 25 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 26 26 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 27 27 H 1.08000 * 120.74883 * 359.97438 * 5 4 2 28 28 H 1.08002 * 120.44757 * 179.97438 * 6 5 4 29 29 H 0.96997 * 119.99814 * 180.02562 * 8 7 6 30 30 H 1.09001 * 113.61063 * 254.52338 * 11 9 8 31 31 H 1.08995 * 113.61991 * 25.43486 * 11 9 8 32 32 H 1.09000 * 109.47408 * 32.49152 * 14 12 11 33 33 H 1.09002 * 109.47287 * 152.49651 * 14 12 11 34 34 H 1.08001 * 125.96173 * 0.04338 * 16 15 14 35 35 H 1.08005 * 125.53031 * 179.79651 * 18 17 16 36 36 H 1.08993 * 113.61803 * 334.57549 * 20 9 8 37 37 H 1.09007 * 113.61285 * 105.38834 * 20 9 8 38 38 H 1.07998 * 119.56648 * 180.31204 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 1.6874 -2.0659 1.4063 6 6 2.1663 -2.6799 2.5498 7 6 2.8712 -1.9228 3.4796 8 7 3.3585 -2.5271 4.6327 9 6 3.1282 -3.9552 4.8646 10 1 2.2601 -4.3367 4.3273 11 6 4.3894 -4.8182 4.6931 12 6 3.9147 -5.6161 5.9192 13 1 3.2622 -6.4528 5.6696 14 6 5.0463 -6.0066 6.8719 15 7 5.6272 -7.2815 6.4436 16 6 6.9199 -7.5253 6.1671 17 7 7.0313 -8.7827 5.8231 18 6 5.8354 -9.3689 5.8596 19 7 4.9432 -8.4901 6.2341 20 6 3.1555 -4.3502 6.3505 21 7 3.0824 -0.6314 3.2762 22 6 2.6427 -0.0210 2.1921 23 1 -0.3934 0.4418 0.7650 24 1 1.7924 -0.5139 -0.8899 25 1 1.5616 2.4678 -1.2086 26 1 1.5878 2.4586 1.2241 27 1 1.1364 -2.6282 0.6671 28 1 1.9943 -3.7327 2.7186 29 1 3.8503 -2.0031 5.2841 30 1 4.3987 -5.3994 3.7710 31 1 5.3180 -4.2725 4.8602 32 1 5.8153 -5.2342 6.8587 33 1 4.6512 -6.1088 7.8827 34 1 7.7263 -6.8090 6.2220 35 1 5.6356 -10.4028 5.6195 36 1 3.7466 -3.6765 6.9707 37 1 2.1684 -4.5520 6.7669 38 1 2.8380 1.0327 2.0575 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14643980_13915762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:34:16 Heat of formation + Delta-G solvation = 140.686027 kcal Electronic energy + Delta-G solvation = -21643.687097 eV Core-core repulsion = 18298.121537 eV Total energy + Delta-G solvation = -3345.565560 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.98263 -41.52755 -40.29530 -38.04811 -35.96578 -34.40521 -33.39048 -32.16005 -31.32045 -28.96202 -26.76437 -26.44445 -24.95390 -24.21026 -22.94116 -22.80013 -21.89721 -20.58931 -18.78700 -18.56719 -18.32677 -17.58479 -16.81580 -16.57611 -16.36247 -16.25294 -16.06300 -15.63779 -15.33178 -15.28107 -15.01237 -14.49110 -14.33451 -14.04342 -13.72452 -13.47388 -13.33160 -13.24844 -12.75380 -12.47967 -12.27470 -12.04102 -11.82593 -11.59343 -11.07477 -10.96447 -10.80211 -10.77519 -10.55447 -10.50600 -10.41393 -8.70088 -4.91523 0.20360 0.38115 0.70373 1.33045 1.44695 1.59745 1.96054 2.01639 2.11407 2.79126 3.38711 3.44608 3.45900 3.49910 3.54404 3.58752 3.75662 3.77784 3.87384 3.98323 4.04929 4.15593 4.18939 4.33053 4.36127 4.50722 4.58274 4.70050 4.71503 4.74389 4.78608 4.96334 4.99736 5.03243 5.23003 5.31437 5.34644 5.46565 5.54493 5.94767 6.03148 6.49264 6.56025 7.13430 7.13849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.065 4.065 3 Si 0.759 3.241 4 C -0.234 4.234 5 C -0.013 4.013 6 C -0.245 4.245 7 C 0.396 3.604 8 N -0.704 5.704 9 C 0.129 3.871 10 H 0.108 0.892 11 C -0.144 4.144 12 C -0.114 4.114 13 H 0.088 0.912 14 C 0.135 3.865 15 N -0.377 5.377 16 C 0.256 3.744 17 N -0.586 5.586 18 C 0.186 3.814 19 N -0.349 5.349 20 C -0.122 4.122 21 N -0.563 5.563 22 C 0.146 3.854 23 H 0.384 0.616 24 H 0.124 0.876 25 H -0.301 1.301 26 H -0.282 1.282 27 H 0.143 0.857 28 H 0.145 0.855 29 H 0.410 0.590 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.137 0.863 33 H 0.098 0.902 34 H 0.256 0.744 35 H 0.232 0.768 36 H 0.111 0.889 37 H 0.083 0.917 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.368 1.755 2.615 3.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.175 4.175 3 Si 0.665 3.335 4 C -0.239 4.239 5 C -0.039 4.039 6 C -0.270 4.270 7 C 0.160 3.840 8 N -0.336 5.336 9 C 0.024 3.976 10 H 0.125 0.875 11 C -0.183 4.183 12 C -0.134 4.134 13 H 0.106 0.894 14 C 0.014 3.986 15 N -0.167 5.167 16 C -0.040 4.040 17 N -0.314 5.314 18 C -0.116 4.116 19 N -0.177 5.177 20 C -0.161 4.161 21 N -0.280 5.280 22 C -0.011 4.011 23 H 0.234 0.766 24 H 0.142 0.858 25 H -0.229 1.229 26 H -0.208 1.208 27 H 0.161 0.839 28 H 0.162 0.838 29 H 0.247 0.753 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.154 0.846 33 H 0.116 0.884 34 H 0.272 0.728 35 H 0.248 0.752 36 H 0.129 0.871 37 H 0.101 0.899 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.164 2.303 2.759 4.195 hybrid contribution -1.429 -0.430 0.032 1.493 sum 0.735 1.874 2.790 3.441 Atomic orbital electron populations 1.86567 1.18783 1.80316 1.50118 1.24932 0.83119 1.11321 0.98103 0.94176 0.90425 0.72399 0.76513 1.20952 1.06863 0.96011 1.00102 1.21403 0.93128 0.93668 0.95676 1.21653 1.06489 1.02057 0.96759 1.18676 0.89279 0.88344 0.87699 1.44568 1.59711 1.09144 1.20148 1.22565 0.98497 0.78672 0.97908 0.87451 1.23629 0.99220 0.97494 0.97941 1.22531 0.97241 0.97417 0.96226 0.89373 1.22197 0.97716 0.79766 0.98921 1.50738 1.06719 1.09641 1.49614 1.26844 0.88470 0.94820 0.93874 1.70546 1.27162 1.07370 1.26278 1.26449 0.85824 1.01625 0.97736 1.77945 1.22256 0.92357 1.25166 1.23324 1.01965 0.95555 0.95281 1.67193 1.26922 1.09686 1.24217 1.22512 0.91412 0.99689 0.87533 0.76646 0.85816 1.22915 1.20828 0.83903 0.83779 0.75295 0.92455 0.88214 0.84551 0.88377 0.72809 0.75237 0.87098 0.89857 0.81636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.37 12.84 -148.98 -1.91 -3.28 16 2 C -0.06 0.04 2.82 71.24 0.20 0.24 16 3 Si 0.76 -1.39 29.90 68.60 2.05 0.66 16 4 C -0.23 -0.18 5.36 -19.76 -0.11 -0.29 16 5 C -0.01 -0.01 9.83 22.44 0.22 0.21 16 6 C -0.25 -0.16 9.29 22.50 0.21 0.05 16 7 C 0.40 0.77 7.65 133.05 1.02 1.78 16 8 N -0.70 2.46 5.53 -322.06 -1.78 0.68 16 9 C 0.13 -0.88 4.03 45.52 0.18 -0.69 16 10 H 0.11 -0.64 6.10 -2.39 -0.01 -0.65 16 11 C -0.14 1.03 7.43 31.12 0.23 1.26 16 12 C -0.11 0.89 3.88 -10.27 -0.04 0.85 16 13 H 0.09 -0.24 8.00 -2.39 -0.02 -0.26 16 14 C 0.13 -1.20 6.39 86.38 0.55 -0.65 16 15 N -0.38 0.49 3.69 -352.06 -1.30 -0.81 16 16 C 0.26 -0.42 12.63 180.36 2.28 1.86 16 17 N -0.59 -3.16 11.19 -204.01 -2.28 -5.44 16 18 C 0.19 0.86 13.03 180.77 2.36 3.22 16 19 N -0.35 -1.76 12.45 -61.25 -0.76 -2.53 16 20 C -0.12 1.24 7.39 31.12 0.23 1.47 16 21 N -0.56 -2.51 10.39 -193.26 -2.01 -4.52 16 22 C 0.15 0.28 9.84 84.63 0.83 1.11 16 23 H 0.38 -1.03 8.70 -74.06 -0.64 -1.68 16 24 H 0.12 -0.29 7.96 -2.39 -0.02 -0.31 16 25 H -0.30 -1.74 7.11 99.48 0.71 -1.04 16 26 H -0.28 -0.54 7.02 99.48 0.70 0.16 16 27 H 0.14 -0.18 8.06 -2.91 -0.02 -0.20 16 28 H 0.14 -0.37 6.03 -2.91 -0.02 -0.39 16 29 H 0.41 -2.13 8.85 -92.71 -0.82 -2.95 16 30 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 31 H 0.10 -0.88 7.90 -2.39 -0.02 -0.90 16 32 H 0.14 -2.12 7.79 -2.39 -0.02 -2.14 16 33 H 0.10 -0.93 8.14 -2.39 -0.02 -0.95 16 34 H 0.26 -2.96 8.06 -2.91 -0.02 -2.98 16 35 H 0.23 -0.24 8.06 -2.91 -0.02 -0.27 16 36 H 0.11 -1.47 8.08 -2.39 -0.02 -1.49 16 37 H 0.08 -0.77 8.14 -2.38 -0.02 -0.79 16 38 H 0.17 -0.30 4.85 -2.91 -0.01 -0.31 16 Total: 0.00 -22.03 322.53 -0.16 -22.19 By element: Atomic # 1 Polarization: -17.02 SS G_CDS: -0.33 Total: -17.35 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 8.16 Total: 10.40 kcal Atomic # 7 Polarization: -4.49 SS G_CDS: -8.13 Total: -12.62 kcal Atomic # 8 Polarization: -1.37 SS G_CDS: -1.91 Total: -3.28 kcal Atomic # 14 Polarization: -1.39 SS G_CDS: 2.05 Total: 0.66 kcal Total: -22.03 -0.16 -22.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14643980_13915762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.878 kcal (2) G-P(sol) polarization free energy of solvation -22.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds