Wall clock time and date at job start Mon Mar 8 2021 06:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86296 * 109.47140 * 2 1 4 4 C 1.50705 * 109.46646 * 240.00222 * 2 1 3 5 5 C 1.33318 * 125.95682 * 299.97305 * 4 2 1 6 6 N 1.32119 * 114.58256 * 179.75543 * 5 4 2 7 7 C 1.29682 * 116.86681 * 0.47193 * 6 5 4 8 8 N 1.38610 * 124.95213 * 179.81543 * 7 6 5 9 9 C 1.46496 * 119.99736 * 359.69737 * 8 7 6 10 10 H 1.09002 * 112.84986 * 336.19325 * 9 8 7 11 11 C 1.53784 * 113.61763 * 107.50563 * 9 8 7 12 12 C 1.53775 * 87.08175 * 139.97847 * 11 9 8 13 13 H 1.09000 * 113.68909 * 89.13106 * 12 11 9 14 14 C 1.53001 * 113.61417 * 220.01982 * 12 11 9 15 15 N 1.46503 * 109.46834 * 272.49984 * 14 12 11 16 16 C 1.34434 * 126.81881 * 125.00001 * 15 14 12 17 17 N 1.30834 * 108.07141 * 180.02562 * 16 15 14 18 18 C 1.33236 * 109.83163 * 0.02562 * 17 16 15 19 19 N 1.30706 * 108.94932 * 359.97438 * 18 17 16 20 20 C 1.53778 * 87.08651 * 334.56975 * 12 11 9 21 21 S 1.70969 * 110.09894 * 359.55251 * 7 6 5 22 22 H 0.96703 * 113.99857 * 59.99467 * 1 2 3 23 23 H 1.09000 * 109.47277 * 120.00725 * 2 1 3 24 24 H 1.48496 * 110.00506 * 298.68418 * 3 2 1 25 25 H 1.48500 * 109.99853 * 60.00501 * 3 2 1 26 26 H 1.08008 * 122.70556 * 0.02562 * 5 4 2 27 27 H 0.96997 * 119.99940 * 179.70153 * 8 7 6 28 28 H 1.08999 * 113.60631 * 25.42806 * 11 9 8 29 29 H 1.09002 * 113.60941 * 254.53113 * 11 9 8 30 30 H 1.09002 * 109.47249 * 152.50242 * 14 12 11 31 31 H 1.08998 * 109.46983 * 32.49343 * 14 12 11 32 32 H 1.07990 * 125.96348 * 359.77278 * 16 15 14 33 33 H 1.08008 * 125.52780 * 180.02562 * 18 17 16 34 34 H 1.08996 * 113.61897 * 139.97832 * 20 12 11 35 35 H 1.08999 * 113.61406 * 270.88702 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2306 5 6 1.6838 -1.9788 -1.5580 6 7 2.2340 -2.3708 -2.6934 7 6 2.9424 -1.4940 -3.3348 8 7 3.5951 -1.7251 -4.5355 9 6 3.5175 -3.0436 -5.1694 10 1 3.2986 -3.8419 -4.4603 11 6 2.6305 -3.0722 -6.4253 12 6 3.6879 -3.9940 -7.0553 13 1 3.5156 -5.0531 -6.8637 14 6 3.9620 -3.6940 -8.5303 15 7 3.0176 -4.4415 -9.3643 16 6 2.1918 -3.9365 -10.2972 17 7 1.5125 -4.9266 -10.8168 18 6 1.8749 -6.0734 -10.2434 19 7 2.7943 -5.8280 -9.3474 20 6 4.7048 -3.3520 -6.0968 21 16 2.9478 -0.0093 -2.4870 22 1 -0.3933 0.4418 -0.7650 23 1 1.7924 -0.5139 0.8899 24 1 1.5879 2.4586 -1.2241 25 1 1.5616 2.4678 1.2086 26 1 1.0786 -2.6320 -0.9466 27 1 4.1032 -1.0139 -4.9560 28 1 2.5436 -2.1050 -6.9204 29 1 1.6668 -3.5565 -6.2682 30 1 4.9807 -3.9919 -8.7786 31 1 3.8411 -2.6261 -8.7125 32 1 2.1017 -2.8948 -10.5674 33 1 1.4745 -7.0479 -10.4811 34 1 5.4156 -4.0623 -5.6746 35 1 5.1850 -2.4614 -6.5022 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14643980_15704118.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:34:19 Heat of formation + Delta-G solvation = 144.650588 kcal Electronic energy + Delta-G solvation = -20239.200049 eV Core-core repulsion = 16982.958652 eV Total energy + Delta-G solvation = -3256.241397 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.089 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.99819 -41.09215 -40.20765 -38.01504 -36.04312 -34.37657 -32.13469 -31.30804 -29.23162 -27.02753 -26.66414 -25.21850 -23.92752 -22.97672 -22.55258 -21.02995 -20.72648 -19.58317 -18.52059 -18.18095 -17.15743 -17.05027 -16.55994 -16.47032 -16.21223 -15.90241 -15.72399 -15.55865 -15.10726 -14.96093 -14.61010 -13.96983 -13.83566 -13.73075 -13.46117 -12.96266 -12.87663 -12.48022 -12.38280 -12.08365 -12.01210 -11.77917 -11.20310 -10.92500 -10.91812 -10.73152 -10.58465 -10.27683 -10.21726 -8.78899 -5.08530 -0.06549 0.00139 0.65986 0.67640 1.22222 1.29462 1.53067 1.88353 1.99758 2.05405 2.06972 3.14724 3.20648 3.27043 3.32011 3.39709 3.54897 3.63946 3.74631 3.90153 3.91886 3.98846 4.17683 4.30484 4.37791 4.50874 4.52015 4.58641 4.71681 4.76797 4.81775 4.96936 5.21071 5.28248 5.48568 5.77785 5.81391 5.98346 6.33365 6.97213 7.14249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.526 6.526 2 C -0.017 4.017 3 Si 0.654 3.346 4 C -0.304 4.304 5 C 0.119 3.881 6 N -0.550 5.550 7 C 0.325 3.675 8 N -0.683 5.683 9 C 0.143 3.857 10 H 0.120 0.880 11 C -0.149 4.149 12 C -0.120 4.120 13 H 0.111 0.889 14 C 0.141 3.859 15 N -0.378 5.378 16 C 0.253 3.747 17 N -0.547 5.547 18 C 0.199 3.801 19 N -0.317 5.317 20 C -0.138 4.138 21 S 0.087 5.913 22 H 0.377 0.623 23 H 0.125 0.875 24 H -0.244 1.244 25 H -0.237 1.237 26 H 0.176 0.824 27 H 0.414 0.586 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.217 0.783 33 H 0.217 0.783 34 H 0.084 0.916 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.858 3.780 -0.706 6.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.332 6.332 2 C -0.131 4.131 3 Si 0.554 3.446 4 C -0.427 4.427 5 C -0.032 4.032 6 N -0.275 5.275 7 C -0.046 4.046 8 N -0.321 5.321 9 C 0.036 3.964 10 H 0.138 0.862 11 C -0.188 4.188 12 C -0.140 4.140 13 H 0.129 0.871 14 C 0.019 3.981 15 N -0.169 5.169 16 C -0.044 4.044 17 N -0.274 5.274 18 C -0.104 4.104 19 N -0.145 5.145 20 C -0.177 4.177 21 S 0.337 5.663 22 H 0.225 0.775 23 H 0.143 0.857 24 H -0.168 1.168 25 H -0.161 1.161 26 H 0.193 0.807 27 H 0.252 0.748 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.233 0.767 33 H 0.234 0.766 34 H 0.103 0.897 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.261 4.134 -0.369 6.701 hybrid contribution -1.291 -0.258 -0.288 1.348 sum 3.970 3.875 -0.657 5.587 Atomic orbital electron populations 1.86621 1.17486 1.79894 1.49220 1.24086 0.83473 1.09810 0.95701 0.95222 0.91642 0.75222 0.82555 1.25527 1.13264 0.99190 1.04676 1.21333 0.97152 0.93094 0.91640 1.66468 1.16926 1.33691 1.10418 1.23784 0.95043 0.93438 0.92292 1.44061 1.54458 1.14222 1.19382 1.22506 0.95998 0.85080 0.92829 0.86222 1.23633 0.98811 0.99689 0.96678 1.22688 0.97734 1.01612 0.91961 0.87125 1.21866 0.92082 0.95094 0.89051 1.50558 1.31251 1.05452 1.29611 1.26092 0.88839 1.00782 0.88684 1.70563 1.28398 0.98404 1.30020 1.26060 0.93678 0.98759 0.91894 1.78034 1.21390 0.91127 1.23948 1.23413 0.96844 1.01455 0.95969 1.83990 1.51424 1.13580 1.17334 0.77549 0.85699 1.16790 1.16083 0.80702 0.74840 0.89547 0.90736 0.88880 0.87942 0.76652 0.76649 0.89701 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.53 12.87 -35.23 -0.45 -0.98 16 2 C -0.02 0.01 2.99 36.01 0.11 0.11 16 3 Si 0.65 -0.57 31.05 -169.99 -5.28 -5.85 16 4 C -0.30 -0.13 5.74 -36.02 -0.21 -0.34 16 5 C 0.12 0.20 11.22 -19.15 -0.21 -0.01 16 6 N -0.55 -1.41 9.83 -15.21 -0.15 -1.56 16 7 C 0.32 0.18 8.09 -87.68 -0.71 -0.53 16 8 N -0.68 1.39 5.51 -54.99 -0.30 1.09 16 9 C 0.14 -0.31 4.36 -67.12 -0.29 -0.60 16 10 H 0.12 0.00 7.67 -51.93 -0.40 -0.40 16 11 C -0.15 0.35 7.43 -25.92 -0.19 0.16 16 12 C -0.12 0.36 3.88 -89.81 -0.35 0.01 16 13 H 0.11 -0.08 8.00 -51.93 -0.42 -0.50 16 14 C 0.14 -0.50 6.39 -4.04 -0.03 -0.53 16 15 N -0.38 0.03 3.69 -62.63 -0.23 -0.20 16 16 C 0.25 -0.03 12.63 -90.65 -1.14 -1.18 16 17 N -0.55 -1.57 11.19 -15.83 -0.18 -1.75 16 18 C 0.20 0.44 13.03 -91.82 -1.20 -0.75 16 19 N -0.32 -0.83 12.45 29.29 0.36 -0.47 16 20 C -0.14 0.59 7.39 -25.92 -0.19 0.40 16 21 S 0.09 -0.05 20.57 -107.50 -2.21 -2.26 16 22 H 0.38 -0.60 8.70 45.56 0.40 -0.20 16 23 H 0.13 -0.15 7.96 -51.93 -0.41 -0.57 16 24 H -0.24 -0.24 7.11 56.52 0.40 0.16 16 25 H -0.24 -0.44 7.11 56.52 0.40 -0.04 16 26 H 0.18 0.13 8.06 -52.48 -0.42 -0.30 16 27 H 0.41 -1.85 8.85 -40.82 -0.36 -2.21 16 28 H 0.09 -0.29 7.90 -51.93 -0.41 -0.70 16 29 H 0.07 0.00 8.14 -51.93 -0.42 -0.43 16 30 H 0.09 -0.37 8.14 -51.93 -0.42 -0.79 16 31 H 0.10 -0.65 7.79 -51.93 -0.40 -1.05 16 32 H 0.22 -0.97 8.06 -52.49 -0.42 -1.40 16 33 H 0.22 -0.17 8.06 -52.48 -0.42 -0.60 16 34 H 0.08 -0.33 8.14 -51.93 -0.42 -0.75 16 35 H 0.09 -0.55 8.08 -51.93 -0.42 -0.97 16 LS Contribution 318.06 15.07 4.79 4.79 Total: 0.00 -8.96 318.06 -12.22 -21.18 By element: Atomic # 1 Polarization: -6.58 SS G_CDS: -4.16 Total: -10.74 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -4.42 Total: -3.26 kcal Atomic # 7 Polarization: -2.39 SS G_CDS: -0.50 Total: -2.89 kcal Atomic # 8 Polarization: -0.53 SS G_CDS: -0.45 Total: -0.98 kcal Atomic # 14 Polarization: -0.57 SS G_CDS: -5.28 Total: -5.85 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -2.21 Total: -2.26 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -8.96 -12.22 -21.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14643980_15704118.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.834 kcal (2) G-P(sol) polarization free energy of solvation -8.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds