Wall clock time and date at job start Mon Mar 8 2021 06:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86296 * 109.47140 * 2 1 4 4 C 1.50705 * 109.46646 * 240.00222 * 2 1 3 5 5 C 1.33318 * 125.95682 * 299.97305 * 4 2 1 6 6 N 1.32119 * 114.58256 * 179.75543 * 5 4 2 7 7 C 1.29682 * 116.86681 * 0.47193 * 6 5 4 8 8 N 1.38610 * 124.95213 * 179.81543 * 7 6 5 9 9 C 1.46496 * 119.99736 * 359.69737 * 8 7 6 10 10 H 1.09002 * 112.84986 * 336.19325 * 9 8 7 11 11 C 1.53784 * 113.61763 * 107.50563 * 9 8 7 12 12 C 1.53775 * 87.08175 * 139.97847 * 11 9 8 13 13 H 1.09000 * 113.68909 * 89.13106 * 12 11 9 14 14 C 1.53001 * 113.61417 * 220.01982 * 12 11 9 15 15 N 1.46503 * 109.46834 * 272.49984 * 14 12 11 16 16 C 1.34434 * 126.81881 * 125.00001 * 15 14 12 17 17 N 1.30834 * 108.07141 * 180.02562 * 16 15 14 18 18 C 1.33236 * 109.83163 * 0.02562 * 17 16 15 19 19 N 1.30706 * 108.94932 * 359.97438 * 18 17 16 20 20 C 1.53778 * 87.08651 * 334.56975 * 12 11 9 21 21 S 1.70969 * 110.09894 * 359.55251 * 7 6 5 22 22 H 0.96703 * 113.99857 * 59.99467 * 1 2 3 23 23 H 1.09000 * 109.47277 * 120.00725 * 2 1 3 24 24 H 1.48496 * 110.00506 * 298.68418 * 3 2 1 25 25 H 1.48500 * 109.99853 * 60.00501 * 3 2 1 26 26 H 1.08008 * 122.70556 * 0.02562 * 5 4 2 27 27 H 0.96997 * 119.99940 * 179.70153 * 8 7 6 28 28 H 1.08999 * 113.60631 * 25.42806 * 11 9 8 29 29 H 1.09002 * 113.60941 * 254.53113 * 11 9 8 30 30 H 1.09002 * 109.47249 * 152.50242 * 14 12 11 31 31 H 1.08998 * 109.46983 * 32.49343 * 14 12 11 32 32 H 1.07990 * 125.96348 * 359.77278 * 16 15 14 33 33 H 1.08008 * 125.52780 * 180.02562 * 18 17 16 34 34 H 1.08996 * 113.61897 * 139.97832 * 20 12 11 35 35 H 1.08999 * 113.61406 * 270.88702 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2306 5 6 1.6838 -1.9788 -1.5580 6 7 2.2340 -2.3708 -2.6934 7 6 2.9424 -1.4940 -3.3348 8 7 3.5951 -1.7251 -4.5355 9 6 3.5175 -3.0436 -5.1694 10 1 3.2986 -3.8419 -4.4603 11 6 2.6305 -3.0722 -6.4253 12 6 3.6879 -3.9940 -7.0553 13 1 3.5156 -5.0531 -6.8637 14 6 3.9620 -3.6940 -8.5303 15 7 3.0176 -4.4415 -9.3643 16 6 2.1918 -3.9365 -10.2972 17 7 1.5125 -4.9266 -10.8168 18 6 1.8749 -6.0734 -10.2434 19 7 2.7943 -5.8280 -9.3474 20 6 4.7048 -3.3520 -6.0968 21 16 2.9478 -0.0093 -2.4870 22 1 -0.3933 0.4418 -0.7650 23 1 1.7924 -0.5139 0.8899 24 1 1.5879 2.4586 -1.2241 25 1 1.5616 2.4678 1.2086 26 1 1.0786 -2.6320 -0.9466 27 1 4.1032 -1.0139 -4.9560 28 1 2.5436 -2.1050 -6.9204 29 1 1.6668 -3.5565 -6.2682 30 1 4.9807 -3.9919 -8.7786 31 1 3.8411 -2.6261 -8.7125 32 1 2.1017 -2.8948 -10.5674 33 1 1.4745 -7.0479 -10.4811 34 1 5.4156 -4.0623 -5.6746 35 1 5.1850 -2.4614 -6.5022 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14643980_15704118.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:34:19 Heat of formation + Delta-G solvation = 146.318864 kcal Electronic energy + Delta-G solvation = -20239.127707 eV Core-core repulsion = 16982.958652 eV Total energy + Delta-G solvation = -3256.169055 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.089 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.98920 -41.01831 -40.12786 -38.03205 -35.94570 -34.30317 -32.17170 -31.31755 -29.09965 -26.85487 -26.58876 -25.17323 -23.89231 -22.94820 -22.49967 -20.86372 -20.71386 -19.50371 -18.46216 -18.14315 -17.08467 -16.95913 -16.52385 -16.41581 -16.14193 -15.87165 -15.66934 -15.53769 -15.05893 -14.97990 -14.49572 -13.97357 -13.68346 -13.48267 -13.31308 -12.96480 -12.77929 -12.46895 -12.34584 -12.02127 -11.87181 -11.62371 -11.13746 -10.97521 -10.90110 -10.79919 -10.51571 -10.29675 -10.21022 -8.73457 -5.04207 -0.07445 0.02379 0.65200 0.69832 1.24774 1.45115 1.54439 1.88566 1.94718 2.00629 2.20554 3.36565 3.38314 3.43003 3.48009 3.53318 3.69316 3.77107 3.89012 3.93253 4.13973 4.17063 4.38400 4.51188 4.56483 4.67351 4.69228 4.71635 4.78665 4.93501 5.00764 5.04350 5.30482 5.34889 5.45312 5.84650 5.95186 6.19158 6.42435 7.01961 7.12811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.025 4.025 3 Si 0.728 3.272 4 C -0.307 4.307 5 C 0.102 3.898 6 N -0.584 5.584 7 C 0.314 3.686 8 N -0.670 5.670 9 C 0.138 3.862 10 H 0.091 0.909 11 C -0.142 4.142 12 C -0.115 4.115 13 H 0.081 0.919 14 C 0.136 3.864 15 N -0.377 5.377 16 C 0.256 3.744 17 N -0.586 5.586 18 C 0.186 3.814 19 N -0.350 5.350 20 C -0.118 4.118 21 S 0.122 5.878 22 H 0.386 0.614 23 H 0.133 0.867 24 H -0.265 1.265 25 H -0.276 1.276 26 H 0.174 0.826 27 H 0.428 0.572 28 H 0.106 0.894 29 H 0.043 0.957 30 H 0.101 0.899 31 H 0.141 0.859 32 H 0.258 0.742 33 H 0.231 0.769 34 H 0.082 0.918 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.216 5.583 -1.464 8.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.137 4.137 3 Si 0.630 3.370 4 C -0.430 4.430 5 C -0.049 4.049 6 N -0.310 5.310 7 C -0.057 4.057 8 N -0.310 5.310 9 C 0.030 3.970 10 H 0.109 0.891 11 C -0.182 4.182 12 C -0.135 4.135 13 H 0.099 0.901 14 C 0.015 3.985 15 N -0.168 5.168 16 C -0.040 4.040 17 N -0.314 5.314 18 C -0.117 4.117 19 N -0.179 5.179 20 C -0.156 4.156 21 S 0.371 5.629 22 H 0.235 0.765 23 H 0.151 0.849 24 H -0.190 1.190 25 H -0.202 1.202 26 H 0.191 0.809 27 H 0.268 0.732 28 H 0.125 0.875 29 H 0.062 0.938 30 H 0.119 0.881 31 H 0.159 0.841 32 H 0.274 0.726 33 H 0.247 0.753 34 H 0.101 0.899 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.653 5.936 -1.140 8.988 hybrid contribution -1.735 -0.787 -0.025 1.905 sum 4.917 5.149 -1.165 7.215 Atomic orbital electron populations 1.86592 1.18279 1.80286 1.49987 1.24322 0.82972 1.10586 0.95846 0.94391 0.90461 0.72965 0.79192 1.25639 1.13237 0.98966 1.05116 1.21402 0.97831 0.93793 0.91904 1.66461 1.18253 1.35072 1.11220 1.24044 0.94878 0.93811 0.92944 1.44100 1.53802 1.14631 1.18501 1.22430 0.97664 0.84415 0.92486 0.89067 1.23606 0.97349 1.00426 0.96801 1.22505 0.98082 0.99883 0.93007 0.90086 1.22224 0.91776 0.96784 0.87700 1.50752 1.31543 1.04625 1.29853 1.26868 0.87565 1.01880 0.87673 1.70538 1.30075 0.99251 1.31554 1.26437 0.93797 0.99569 0.91898 1.77950 1.22093 0.93213 1.24611 1.23348 0.95690 1.02298 0.94308 1.83772 1.50638 1.12196 1.16273 0.76480 0.84918 1.19015 1.20186 0.80905 0.73179 0.87538 0.93793 0.88068 0.84092 0.72615 0.75309 0.89916 0.85945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.36 12.87 -148.98 -1.92 -3.28 16 2 C -0.03 0.01 2.99 71.24 0.21 0.22 16 3 Si 0.73 -1.42 31.05 68.60 2.13 0.71 16 4 C -0.31 -0.36 5.74 24.57 0.14 -0.22 16 5 C 0.10 0.47 11.22 83.54 0.94 1.40 16 6 N -0.58 -3.71 9.83 -202.03 -1.99 -5.69 16 7 C 0.31 0.36 8.09 179.32 1.45 1.81 16 8 N -0.67 3.26 5.51 -327.89 -1.81 1.45 16 9 C 0.14 -0.58 4.36 45.52 0.20 -0.38 16 10 H 0.09 0.18 7.67 -2.39 -0.02 0.16 16 11 C -0.14 0.69 7.43 31.12 0.23 0.92 16 12 C -0.11 0.72 3.88 -10.27 -0.04 0.68 16 13 H 0.08 0.02 8.00 -2.39 -0.02 0.00 16 14 C 0.14 -1.20 6.39 86.38 0.55 -0.65 16 15 N -0.38 0.23 3.69 -352.06 -1.30 -1.07 16 16 C 0.26 -0.30 12.63 180.36 2.28 1.98 16 17 N -0.59 -3.62 11.19 -204.01 -2.28 -5.91 16 18 C 0.19 1.07 13.03 180.77 2.36 3.42 16 19 N -0.35 -2.21 12.45 -61.25 -0.76 -2.97 16 20 C -0.12 1.16 7.39 31.12 0.23 1.39 16 21 S 0.12 -0.22 20.57 -56.49 -1.16 -1.38 16 22 H 0.39 -1.04 8.70 -74.06 -0.64 -1.68 16 23 H 0.13 -0.31 7.96 -2.39 -0.02 -0.33 16 24 H -0.26 -0.39 7.11 99.48 0.71 0.32 16 25 H -0.28 -1.23 7.11 99.48 0.71 -0.52 16 26 H 0.17 0.60 8.06 -2.91 -0.02 0.57 16 27 H 0.43 -4.71 8.85 -92.71 -0.82 -5.53 16 28 H 0.11 -0.94 7.90 -2.39 -0.02 -0.96 16 29 H 0.04 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.10 -1.00 8.14 -2.39 -0.02 -1.02 16 31 H 0.14 -2.33 7.79 -2.39 -0.02 -2.34 16 32 H 0.26 -2.98 8.06 -2.92 -0.02 -3.01 16 33 H 0.23 0.04 8.06 -2.91 -0.02 0.01 16 34 H 0.08 -0.71 8.14 -2.39 -0.02 -0.73 16 35 H 0.12 -1.92 8.08 -2.39 -0.02 -1.93 16 Total: 0.00 -23.65 318.06 -0.83 -24.49 By element: Atomic # 1 Polarization: -16.64 SS G_CDS: -0.29 Total: -16.93 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 8.55 Total: 10.59 kcal Atomic # 7 Polarization: -6.06 SS G_CDS: -8.14 Total: -14.19 kcal Atomic # 8 Polarization: -1.36 SS G_CDS: -1.92 Total: -3.28 kcal Atomic # 14 Polarization: -1.42 SS G_CDS: 2.13 Total: 0.71 kcal Atomic # 16 Polarization: -0.22 SS G_CDS: -1.16 Total: -1.38 kcal Total: -23.65 -0.83 -24.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14643980_15704118.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.806 kcal (2) G-P(sol) polarization free energy of solvation -23.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds