Wall clock time and date at job start Mon Mar 8 2021 06:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33325 * 125.95262 * 2 1 4 4 C 1.50705 * 122.71049 * 359.97438 * 3 2 1 5 5 O 1.42898 * 109.47113 * 113.56578 * 4 3 2 6 6 Si 1.86304 * 109.46937 * 233.56958 * 4 3 2 7 7 N 1.32124 * 114.58019 * 180.02562 * 3 2 1 8 8 C 1.29688 * 116.86302 * 359.97438 * 7 3 2 9 9 N 1.38610 * 124.94582 * 179.97438 * 8 7 3 10 10 C 1.46501 * 120.00115 * 180.02562 * 9 8 7 11 11 H 1.08997 * 112.84575 * 336.19731 * 10 9 8 12 12 C 1.53954 * 113.74444 * 107.39941 * 10 9 8 13 13 C 1.53783 * 87.01863 * 139.94569 * 12 10 9 14 14 H 1.08999 * 113.61118 * 89.23126 * 13 12 10 15 15 C 1.52995 * 113.61064 * 220.04679 * 13 12 10 16 16 N 1.46498 * 109.47607 * 274.13429 * 15 13 12 17 17 C 1.34425 * 126.82598 * 124.71025 * 16 15 13 18 18 N 1.30831 * 108.07869 * 179.90108 * 17 16 15 19 19 C 1.33237 * 109.83295 * 0.37997 * 18 17 16 20 20 N 1.30723 * 108.94279 * 359.76338 * 19 18 17 21 21 C 1.53774 * 113.61640 * 204.99984 * 10 9 8 22 22 S 1.70961 * 110.10516 * 0.24523 * 8 7 3 23 23 H 1.08998 * 109.47547 * 84.87968 * 1 2 3 24 24 H 1.09008 * 109.47202 * 204.88214 * 1 2 3 25 25 H 1.09007 * 109.47048 * 324.87326 * 1 2 3 26 26 H 1.09002 * 109.47000 * 353.56495 * 4 3 2 27 27 H 0.96703 * 113.99713 * 60.00033 * 5 4 3 28 28 H 1.48498 * 109.99694 * 180.02562 * 6 4 3 29 29 H 1.48500 * 109.99665 * 301.31425 * 6 4 3 30 30 H 0.97002 * 120.00192 * 359.97438 * 9 8 7 31 31 H 1.08999 * 113.61519 * 25.42562 * 12 10 9 32 32 H 1.09004 * 113.66742 * 254.47239 * 12 10 9 33 33 H 1.09004 * 109.47636 * 34.13924 * 15 13 12 34 34 H 1.09004 * 109.47069 * 154.14024 * 15 13 12 35 35 H 1.08004 * 125.96030 * 0.03780 * 17 16 15 36 36 H 1.07995 * 125.53397 * 179.80090 * 19 18 17 37 37 H 1.09003 * 113.61763 * 105.38098 * 21 10 9 38 38 H 1.09008 * 113.61362 * 334.48005 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 -0.0006 5 8 2.0694 3.1230 1.2343 6 14 2.4876 3.4406 -1.4138 7 7 3.5851 0.8187 -0.0005 8 6 3.9314 -0.4310 -0.0005 9 7 5.2384 -0.8927 -0.0015 10 6 5.5065 -2.3330 -0.0019 11 1 4.6808 -2.9172 0.4041 12 6 6.0333 -2.8651 -1.3471 13 6 6.9914 -3.7487 -0.5308 14 1 6.5728 -4.7205 -0.2690 15 6 8.3948 -3.8486 -1.1318 16 7 8.4236 -4.9208 -2.1296 17 6 8.8034 -4.8155 -3.4148 18 7 8.6876 -5.9943 -3.9703 19 6 8.2311 -6.8718 -3.0777 20 7 8.0540 -6.2618 -1.9352 21 6 6.8751 -2.7050 0.5925 22 16 2.5413 -1.4261 -0.0065 23 1 -0.3634 0.0917 -1.0235 24 1 -0.3634 -0.9323 0.4324 25 1 -0.3633 0.8406 0.5913 26 1 0.6581 2.4498 -0.1161 27 1 3.0193 3.1878 1.4036 28 1 1.9554 4.8269 -1.4250 29 1 3.9668 3.4660 -1.2850 30 1 5.9755 -0.2622 -0.0027 31 1 6.5404 -2.1096 -1.9471 32 1 5.2936 -3.4307 -1.9137 33 1 8.6548 -2.9028 -1.6072 34 1 9.1134 -4.0679 -0.3421 35 1 9.1465 -3.9152 -3.9030 36 1 8.0391 -7.9175 -3.2671 37 1 6.8141 -3.1414 1.5895 38 1 7.6129 -1.9055 0.5238 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14643980_15704122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:34:21 Heat of formation + Delta-G solvation = 140.630709 kcal Electronic energy + Delta-G solvation = -22235.264734 eV Core-core repulsion = 18823.311403 eV Total energy + Delta-G solvation = -3411.953331 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.105 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.97925 -41.15590 -40.45741 -37.76746 -36.10219 -34.49154 -32.78579 -32.15229 -29.40738 -28.60518 -26.81460 -25.82417 -24.86816 -23.92366 -22.93922 -22.44139 -21.14475 -20.07637 -19.19317 -18.29741 -18.05720 -17.58201 -16.92884 -16.56440 -16.36387 -16.20244 -15.76137 -15.67277 -15.46107 -15.04692 -14.67358 -14.24536 -14.01653 -13.94685 -13.75626 -13.57074 -13.52419 -13.27892 -13.02872 -12.68631 -12.42728 -12.36605 -11.97534 -11.82553 -11.59464 -11.06562 -10.96087 -10.78409 -10.70987 -10.52769 -10.50232 -10.07178 -8.64627 -4.96940 -0.04548 0.14491 0.70385 0.72347 1.24341 1.44235 1.67286 1.75907 1.92639 2.02250 2.06036 3.27985 3.32516 3.41092 3.45072 3.54625 3.58833 3.66540 3.82139 4.03088 4.11432 4.16268 4.21884 4.28619 4.48473 4.49145 4.62080 4.66374 4.73619 4.79155 4.89155 4.92544 4.96753 4.98315 5.20471 5.29275 5.31797 5.46760 5.66453 5.94834 6.31498 6.34349 6.89149 7.14202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.249 4.249 3 C 0.058 3.942 4 C -0.044 4.044 5 O -0.542 6.542 6 Si 0.776 3.224 7 N -0.573 5.573 8 C 0.308 3.692 9 N -0.675 5.675 10 C 0.125 3.875 11 H 0.101 0.899 12 C -0.143 4.143 13 C -0.114 4.114 14 H 0.090 0.910 15 C 0.135 3.865 16 N -0.377 5.377 17 C 0.256 3.744 18 N -0.585 5.585 19 C 0.187 3.813 20 N -0.348 5.348 21 C -0.118 4.118 22 S 0.113 5.887 23 H 0.094 0.906 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.139 0.861 27 H 0.384 0.616 28 H -0.289 1.289 29 H -0.294 1.294 30 H 0.417 0.583 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.138 0.862 34 H 0.099 0.901 35 H 0.256 0.744 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.074 -0.408 -0.973 1.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.372 4.372 3 C -0.072 4.072 4 C -0.156 4.156 5 O -0.349 6.349 6 Si 0.680 3.320 7 N -0.300 5.300 8 C -0.063 4.063 9 N -0.315 5.315 10 C 0.019 3.981 11 H 0.119 0.881 12 C -0.182 4.182 13 C -0.133 4.133 14 H 0.108 0.892 15 C 0.014 3.986 16 N -0.167 5.167 17 C -0.040 4.040 18 N -0.313 5.313 19 C -0.116 4.116 20 N -0.177 5.177 21 C -0.157 4.157 22 S 0.362 5.638 23 H 0.112 0.888 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.156 0.844 27 H 0.233 0.767 28 H -0.217 1.217 29 H -0.221 1.221 30 H 0.256 0.744 31 H 0.122 0.878 32 H 0.079 0.921 33 H 0.155 0.845 34 H 0.117 0.883 35 H 0.272 0.728 36 H 0.247 0.753 37 H 0.105 0.895 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.010 -0.922 -0.768 1.568 hybrid contribution 0.766 1.129 1.139 1.777 sum 1.776 0.207 0.371 1.826 Atomic orbital electron populations 1.20315 0.85317 1.03611 1.04124 1.25455 1.02284 0.93047 1.16405 1.20083 0.86918 0.97481 1.02736 1.24850 1.05662 0.89751 0.95304 1.86538 1.30191 1.80063 1.38127 0.93868 0.77426 0.77365 0.83341 1.66063 1.17939 1.17669 1.28339 1.23584 0.93011 0.91437 0.98315 1.44062 1.00995 1.07166 1.79253 1.22718 0.98745 0.78506 0.98106 0.88094 1.23678 0.98984 0.98911 0.96671 1.22524 0.94601 0.98900 0.97314 0.89187 1.22183 0.98026 0.87604 0.90761 1.50725 1.47773 1.07535 1.10694 1.26841 0.95111 0.99293 0.82732 1.70547 1.24828 1.01147 1.34817 1.26445 0.96972 1.01972 0.86196 1.77955 1.25124 0.90134 1.24459 1.23317 0.95304 0.98386 0.98697 1.83881 0.96155 1.09904 1.73870 0.88781 0.90870 0.89967 0.84366 0.76727 1.21656 1.22063 0.74386 0.87765 0.92087 0.84455 0.88263 0.72824 0.75268 0.89469 0.86630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.20 9.71 71.24 0.69 0.90 16 2 C -0.25 -0.60 6.57 24.57 0.16 -0.44 16 3 C 0.06 0.27 5.19 41.41 0.21 0.48 16 4 C -0.04 -0.13 2.84 71.24 0.20 0.07 16 5 O -0.54 -3.55 12.88 -148.98 -1.92 -5.47 16 6 Si 0.78 1.76 32.62 68.60 2.24 4.00 16 7 N -0.57 -3.44 9.77 -189.86 -1.85 -5.30 16 8 C 0.31 0.78 8.24 179.32 1.48 2.26 16 9 N -0.67 2.31 5.52 -327.63 -1.81 0.50 16 10 C 0.12 -0.85 4.22 45.57 0.19 -0.65 16 11 H 0.10 -0.50 7.06 -2.39 -0.02 -0.52 16 12 C -0.14 1.09 7.45 31.18 0.23 1.32 16 13 C -0.11 0.95 3.86 -10.27 -0.04 0.91 16 14 H 0.09 -0.31 8.03 -2.39 -0.02 -0.33 16 15 C 0.13 -1.31 6.37 86.38 0.55 -0.76 16 16 N -0.38 0.74 3.69 -352.06 -1.30 -0.56 16 17 C 0.26 -0.56 12.63 180.36 2.28 1.72 16 18 N -0.59 -2.88 11.19 -204.00 -2.28 -5.17 16 19 C 0.19 0.78 13.03 180.76 2.36 3.13 16 20 N -0.35 -1.57 12.47 -61.25 -0.76 -2.33 16 21 C -0.12 1.27 7.40 31.12 0.23 1.50 16 22 S 0.11 0.13 21.69 -56.49 -1.23 -1.10 16 23 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 24 H 0.07 -0.26 8.14 -2.38 -0.02 -0.28 16 25 H 0.08 -0.26 7.17 -2.38 -0.02 -0.27 16 26 H 0.14 -0.15 6.33 -2.39 -0.02 -0.16 16 27 H 0.38 1.34 8.70 -74.05 -0.64 0.70 16 28 H -0.29 -2.15 7.11 99.48 0.71 -1.44 16 29 H -0.29 -2.69 7.11 99.48 0.71 -1.98 16 30 H 0.42 -2.29 8.85 -92.71 -0.82 -3.11 16 31 H 0.10 -1.02 7.92 -2.39 -0.02 -1.04 16 32 H 0.06 -0.23 8.14 -2.38 -0.02 -0.25 16 33 H 0.14 -2.26 7.82 -2.39 -0.02 -2.27 16 34 H 0.10 -1.02 8.14 -2.38 -0.02 -1.04 16 35 H 0.26 -3.08 8.06 -2.91 -0.02 -3.11 16 36 H 0.23 -0.33 8.06 -2.91 -0.02 -0.35 16 37 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 38 H 0.12 -1.66 8.08 -2.38 -0.02 -1.68 16 Total: 0.00 -22.89 338.34 -0.69 -23.58 By element: Atomic # 1 Polarization: -18.28 SS G_CDS: -0.32 Total: -18.60 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 8.55 Total: 10.44 kcal Atomic # 7 Polarization: -4.85 SS G_CDS: -8.01 Total: -12.86 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: -1.92 Total: -5.47 kcal Atomic # 14 Polarization: 1.76 SS G_CDS: 2.24 Total: 4.00 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -1.23 Total: -1.10 kcal Total: -22.89 -0.69 -23.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14643980_15704122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.213 kcal (2) G-P(sol) polarization free energy of solvation -22.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds