Wall clock time and date at job start Mon Mar 8 2021 06:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86298 * 109.46724 * 2 1 4 4 C 1.50699 * 109.47275 * 240.00011 * 2 1 3 5 5 C 1.37980 * 120.32686 * 119.97955 * 4 2 1 6 6 N 1.32010 * 120.90103 * 179.74830 * 5 4 2 7 7 C 1.32340 * 121.64402 * 0.55937 * 6 5 4 8 8 N 1.39138 * 119.71838 * 179.71478 * 7 6 5 9 9 C 1.46500 * 120.00008 * 359.72806 * 8 7 6 10 10 H 1.08996 * 112.85074 * 23.80470 * 9 8 7 11 11 C 1.53785 * 113.61546 * 155.00267 * 9 8 7 12 12 C 1.53779 * 87.08132 * 140.06593 * 11 9 8 13 13 H 1.09003 * 113.61704 * 89.19916 * 12 11 9 14 14 C 1.53004 * 113.61212 * 220.01666 * 12 11 9 15 15 N 1.46505 * 109.47120 * 184.99763 * 14 12 11 16 16 C 1.34428 * 126.82137 * 125.02328 * 15 14 12 17 17 N 1.30829 * 108.07758 * 179.97438 * 16 15 14 18 18 C 1.33239 * 109.82920 * 0.02562 * 17 16 15 19 19 N 1.30714 * 108.94945 * 359.97438 * 18 17 16 20 20 C 1.53782 * 87.08322 * 334.56532 * 12 11 9 21 21 C 1.39345 * 120.56507 * 359.43951 * 7 6 5 22 22 F 1.35096 * 120.47332 * 180.25548 * 21 7 6 23 23 C 1.38438 * 119.05344 * 0.27489 * 21 7 6 24 24 H 0.96697 * 113.99939 * 299.99673 * 1 2 3 25 25 H 1.09004 * 109.46880 * 119.99494 * 2 1 3 26 26 H 1.48500 * 109.99756 * 178.68115 * 3 2 1 27 27 H 1.48499 * 110.00157 * 299.99709 * 3 2 1 28 28 H 1.07998 * 119.54917 * 0.02562 * 5 4 2 29 29 H 0.97003 * 120.00374 * 179.73024 * 8 7 6 30 30 H 1.09001 * 113.61577 * 25.51309 * 11 9 8 31 31 H 1.09003 * 113.68394 * 254.62377 * 11 9 8 32 32 H 1.09005 * 109.46732 * 65.00193 * 14 12 11 33 33 H 1.08994 * 109.47332 * 305.00146 * 14 12 11 34 34 H 1.08003 * 125.95935 * 359.97438 * 16 15 14 35 35 H 1.08002 * 125.53210 * 179.97438 * 18 17 16 36 36 H 1.08990 * 113.61540 * 139.98295 * 20 12 11 37 37 H 1.09000 * 113.61554 * 270.88676 * 20 12 11 38 38 H 1.08006 * 120.75843 * 179.97438 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7247 -0.0462 -2.1433 6 7 3.1751 -0.6589 -3.2224 7 6 2.8781 -1.9229 -3.4781 8 7 3.3697 -2.5274 -4.6308 9 6 4.2074 -1.7633 -5.5584 10 1 4.7089 -0.9217 -5.0807 11 6 5.1454 -2.6391 -6.4058 12 6 4.8213 -1.7074 -7.5855 13 1 5.4915 -0.8513 -7.6628 14 6 4.6406 -2.4424 -8.9152 15 7 4.4550 -1.4661 -9.9916 16 6 5.1745 -1.3675 -11.1228 17 7 4.6961 -0.3709 -11.8227 18 6 3.6760 0.1886 -11.1735 19 7 3.4898 -0.4473 -10.0467 20 6 3.4966 -1.3925 -6.8708 21 6 2.0819 -2.6553 -2.5998 22 9 1.7841 -3.9471 -2.8600 23 6 1.6000 -2.0402 -1.4570 24 1 -0.3933 0.4416 0.7651 25 1 1.7923 -0.5138 0.8901 26 1 3.5345 1.7703 0.0321 27 1 1.5614 2.4679 -1.2085 28 1 2.9845 0.9877 -1.9704 29 1 3.1579 -3.4549 -4.8203 30 1 4.7854 -3.6587 -6.5429 31 1 6.1878 -2.5971 -6.0899 32 1 3.7653 -3.0895 -8.8566 33 1 5.5251 -3.0454 -9.1202 34 1 6.0028 -2.0005 -11.4048 35 1 3.0967 1.0311 -11.5217 36 1 3.2075 -0.3433 -6.9294 37 1 2.6857 -2.0713 -7.1350 38 1 0.9803 -2.5818 -0.7577 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14643980_17656566.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:34:24 Heat of formation + Delta-G solvation = 96.648780 kcal Electronic energy + Delta-G solvation = -24097.913545 eV Core-core repulsion = 20280.984411 eV Total energy + Delta-G solvation = -3816.929133 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.123 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.07988 -43.00958 -41.62327 -40.36745 -37.89486 -36.14421 -34.54527 -33.38560 -32.19179 -31.54328 -29.02814 -26.83947 -26.54879 -25.52983 -23.93073 -22.93369 -22.88826 -22.15759 -20.93036 -19.33170 -18.76468 -18.41435 -18.18375 -18.09137 -17.04803 -16.90991 -16.67895 -16.57448 -15.94168 -15.67563 -15.52482 -15.26340 -15.11173 -14.93892 -14.50808 -14.45480 -14.09576 -13.98209 -13.71200 -13.52952 -13.34485 -12.88441 -12.61543 -12.25389 -12.16219 -12.04269 -11.47164 -11.26486 -11.01080 -10.91579 -10.84315 -10.82387 -10.60587 -10.26589 -8.88316 -4.94981 -0.28422 -0.03086 0.67919 1.29458 1.41908 1.65750 1.87061 1.97179 1.98606 2.34389 2.87503 3.05255 3.25944 3.30742 3.40932 3.51007 3.57579 3.58671 3.71815 3.73315 3.90266 4.01503 4.08733 4.16088 4.27116 4.29207 4.36787 4.52597 4.56995 4.64219 4.65545 4.74544 4.85238 4.94321 4.98183 5.10744 5.28403 5.37119 5.43230 5.84742 5.92266 6.06962 6.80583 6.93033 7.10888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.064 4.064 3 Si 0.772 3.228 4 C -0.171 4.171 5 C 0.125 3.875 6 N -0.532 5.532 7 C 0.378 3.622 8 N -0.699 5.699 9 C 0.129 3.871 10 H 0.101 0.899 11 C -0.117 4.117 12 C -0.108 4.108 13 H 0.088 0.912 14 C 0.135 3.865 15 N -0.379 5.379 16 C 0.257 3.743 17 N -0.585 5.585 18 C 0.184 3.816 19 N -0.346 5.346 20 C -0.137 4.137 21 C -0.029 4.029 22 F -0.133 7.133 23 C -0.037 4.037 24 H 0.406 0.594 25 H 0.103 0.897 26 H -0.282 1.282 27 H -0.297 1.297 28 H 0.155 0.845 29 H 0.420 0.580 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.145 0.855 34 H 0.260 0.740 35 H 0.230 0.770 36 H 0.046 0.954 37 H 0.083 0.917 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.398 -2.786 5.169 6.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.174 4.174 3 Si 0.678 3.322 4 C -0.176 4.176 5 C -0.031 4.031 6 N -0.249 5.249 7 C 0.139 3.861 8 N -0.332 5.332 9 C 0.024 3.976 10 H 0.119 0.881 11 C -0.156 4.156 12 C -0.127 4.127 13 H 0.106 0.894 14 C 0.015 3.985 15 N -0.170 5.170 16 C -0.039 4.039 17 N -0.313 5.313 18 C -0.119 4.119 19 N -0.174 5.174 20 C -0.177 4.177 21 C -0.055 4.055 22 F -0.112 7.112 23 C -0.063 4.063 24 H 0.257 0.743 25 H 0.120 0.880 26 H -0.209 1.209 27 H -0.225 1.225 28 H 0.172 0.828 29 H 0.258 0.742 30 H 0.130 0.870 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.163 0.837 34 H 0.276 0.724 35 H 0.246 0.754 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.168 -1.790 3.768 5.238 hybrid contribution -0.685 -1.306 0.070 1.476 sum 2.483 -3.096 3.839 5.521 Atomic orbital electron populations 1.86438 1.17099 1.82446 1.51585 1.24590 0.85969 1.10662 0.96187 0.94200 0.77596 0.75348 0.85062 1.20270 1.03150 0.94615 0.99545 1.22325 0.93483 0.98899 0.88425 1.67234 1.27345 1.08261 1.22051 1.18624 0.90477 0.88960 0.87998 1.44609 1.54068 1.14679 1.19829 1.22527 0.91926 0.95840 0.87317 0.88113 1.23323 1.00688 0.99062 0.92519 1.22467 0.97918 0.99502 0.92861 0.89362 1.22194 1.05611 0.87902 0.82843 1.50764 1.23573 1.24898 1.17779 1.26927 0.97670 0.95912 0.83389 1.70543 1.14388 1.12301 1.34044 1.26443 0.95501 1.00681 0.89269 1.78026 1.13277 1.03653 1.22457 1.23453 0.97313 1.01272 0.95622 1.18095 1.07195 0.81005 0.99233 1.91479 1.92230 1.33497 1.94030 1.21499 0.95627 0.94333 0.94831 0.74260 0.87977 1.20940 1.22528 0.82838 0.74153 0.86998 0.88902 0.88665 0.83724 0.72418 0.75432 0.93518 0.89876 0.81560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 1.04 12.75 -148.98 -1.90 -0.86 16 2 C -0.06 0.14 2.83 71.24 0.20 0.34 16 3 Si 0.77 -2.52 29.82 68.60 2.05 -0.47 16 4 C -0.17 -0.76 5.43 -19.77 -0.11 -0.87 16 5 C 0.13 0.93 9.84 84.60 0.83 1.76 16 6 N -0.53 -5.00 9.13 -193.04 -1.76 -6.76 16 7 C 0.38 2.66 7.49 133.09 1.00 3.66 16 8 N -0.70 -1.28 5.51 -321.77 -1.77 -3.05 16 9 C 0.13 0.00 4.27 45.52 0.19 0.20 16 10 H 0.10 0.40 7.40 -2.39 -0.02 0.38 16 11 C -0.12 0.85 7.39 31.12 0.23 1.08 16 12 C -0.11 0.46 3.85 -10.27 -0.04 0.42 16 13 H 0.09 -0.12 8.14 -2.39 -0.02 -0.14 16 14 C 0.14 -0.93 6.39 86.38 0.55 -0.38 16 15 N -0.38 -0.25 3.69 -352.05 -1.30 -1.55 16 16 C 0.26 -0.10 12.63 180.36 2.28 2.18 16 17 N -0.58 -4.02 11.19 -204.00 -2.28 -6.30 16 18 C 0.18 1.24 13.03 180.77 2.36 3.59 16 19 N -0.35 -2.59 12.57 -61.24 -0.77 -3.36 16 20 C -0.14 -0.16 7.43 31.12 0.23 0.08 16 21 C -0.03 -0.18 7.35 22.58 0.17 -0.02 16 22 F -0.13 -0.77 16.65 44.97 0.75 -0.02 16 23 C -0.04 -0.16 9.75 22.48 0.22 0.05 16 24 H 0.41 -5.07 8.74 -74.06 -0.65 -5.71 16 25 H 0.10 -0.72 7.96 -2.39 -0.02 -0.74 16 26 H -0.28 -0.49 7.11 99.48 0.71 0.22 16 27 H -0.30 -1.49 7.11 99.48 0.71 -0.78 16 28 H 0.15 0.88 4.88 -2.91 -0.01 0.87 16 29 H 0.42 -0.75 8.20 -92.71 -0.76 -1.51 16 30 H 0.11 -1.22 8.08 -2.39 -0.02 -1.24 16 31 H 0.09 -0.78 8.14 -2.39 -0.02 -0.79 16 32 H 0.10 -0.69 7.84 -2.38 -0.02 -0.70 16 33 H 0.14 -2.12 8.09 -2.39 -0.02 -2.14 16 34 H 0.26 -2.85 8.06 -2.91 -0.02 -2.88 16 35 H 0.23 0.29 8.06 -2.91 -0.02 0.27 16 36 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.08 0.12 7.90 -2.39 -0.02 0.10 16 38 H 0.17 0.11 8.06 -2.91 -0.02 0.09 16 Total: 0.00 -25.54 330.88 0.87 -24.67 By element: Atomic # 1 Polarization: -14.14 SS G_CDS: -0.25 Total: -14.39 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 8.11 Total: 12.10 kcal Atomic # 7 Polarization: -13.14 SS G_CDS: -7.89 Total: -21.03 kcal Atomic # 8 Polarization: 1.04 SS G_CDS: -1.90 Total: -0.86 kcal Atomic # 9 Polarization: -0.77 SS G_CDS: 0.75 Total: -0.02 kcal Atomic # 14 Polarization: -2.52 SS G_CDS: 2.05 Total: -0.47 kcal Total: -25.54 0.87 -24.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14643980_17656566.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.322 kcal (2) G-P(sol) polarization free energy of solvation -25.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds