Wall clock time and date at job start Mon Mar 8 2021 07:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47075 * 2 1 4 4 C 1.34230 * 116.99614 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00179 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99717 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47303 * 300.00327 * 6 4 3 8 8 C 1.53000 * 109.46900 * 60.00293 * 6 4 3 9 9 C 1.53002 * 109.47130 * 179.97438 * 8 6 4 10 10 C 1.53003 * 109.47284 * 300.00135 * 9 8 6 11 11 H 1.09001 * 109.46705 * 300.00146 * 10 9 8 12 12 C 1.52994 * 109.47081 * 179.97438 * 10 9 8 13 13 N 1.46498 * 109.47291 * 64.99942 * 12 10 9 14 14 C 1.38410 * 119.99669 * 179.97438 * 13 12 10 15 15 N 1.32491 * 119.22281 * 359.73457 * 14 13 12 16 16 C 1.32268 * 120.74231 * 179.71967 * 15 14 13 17 17 C 1.38606 * 119.19839 * 0.54036 * 16 15 14 18 18 C 1.50696 * 120.72412 * 179.71010 * 17 16 15 19 19 O 1.42899 * 109.47298 * 245.02539 * 18 17 16 20 20 Si 1.86304 * 109.47029 * 5.02174 * 18 17 16 21 21 C 1.38601 * 118.55679 * 359.73185 * 17 16 15 22 22 N 1.32275 * 119.19853 * 0.02562 * 21 17 16 23 23 C 1.53000 * 109.46830 * 59.99666 * 10 9 8 24 24 C 1.52994 * 109.47562 * 300.00039 * 23 10 9 25 25 H 1.09002 * 109.47153 * 300.00058 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99688 * 1 2 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99942 * 2 1 3 29 29 H 1.09001 * 109.46832 * 120.00132 * 2 1 3 30 30 H 1.08998 * 109.47349 * 299.99708 * 8 6 4 31 31 H 1.09000 * 109.47115 * 59.99918 * 8 6 4 32 32 H 1.09003 * 109.47012 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.46905 * 60.00137 * 9 8 6 34 34 H 1.09004 * 109.47379 * 185.00509 * 12 10 9 35 35 H 1.09006 * 109.47148 * 305.00048 * 12 10 9 36 36 H 0.96998 * 120.00230 * 0.02562 * 13 12 10 37 37 H 1.08002 * 120.40330 * 180.24920 * 16 15 14 38 38 H 1.09000 * 109.47216 * 125.01734 * 18 17 16 39 39 H 0.96703 * 114.00057 * 180.02562 * 19 18 17 40 40 H 1.48505 * 110.00173 * 178.67873 * 20 18 17 41 41 H 1.48494 * 109.99860 * 300.00013 * 20 18 17 42 42 H 1.07998 * 120.40395 * 179.97438 * 21 17 16 43 43 H 1.09005 * 109.46870 * 179.97438 * 23 10 9 44 44 H 1.09000 * 109.47102 * 60.00156 * 23 10 9 45 45 H 1.09000 * 109.47007 * 300.00175 * 24 23 10 46 46 H 1.09003 * 109.47577 * 180.02562 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5852 3.4690 -0.8904 8 6 3.4486 3.6850 1.2486 9 6 4.0339 5.0986 1.2484 10 6 5.5618 5.0181 1.2494 11 1 5.8970 4.4861 2.1399 12 6 6.1471 6.4316 1.2486 13 7 5.7938 7.1072 2.4996 14 6 6.2159 8.4054 2.7281 15 7 6.9432 9.0206 1.8073 16 6 7.3579 10.2630 1.9920 17 6 7.0322 10.9163 3.1702 18 6 7.4922 12.3296 3.4193 19 8 8.4008 12.3475 4.5221 20 14 8.3487 12.9811 1.8985 21 6 6.2748 10.2415 4.1146 22 7 5.8879 9.0014 3.8651 23 6 6.0339 4.2704 0.0008 24 6 5.4487 2.8568 0.0010 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.3601 3.7421 1.2481 31 1 3.7842 3.1533 2.1390 32 1 3.6972 5.6314 2.1378 33 1 3.6987 5.6305 0.3580 34 1 7.2320 6.3757 1.1597 35 1 5.7419 6.9921 0.4060 36 1 5.2647 6.6445 3.1680 37 1 7.9471 10.7606 1.2360 38 1 6.6308 12.9571 3.6480 39 1 8.7380 13.2273 4.7397 40 1 8.7790 14.3851 2.1200 41 1 9.5250 12.1341 1.5761 42 1 6.0043 10.7219 5.0432 43 1 7.1224 4.2134 0.0013 44 1 5.6987 4.8023 -0.8896 45 1 5.7839 2.3249 0.8914 46 1 5.7853 2.3240 -0.8883 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14654748_12175864.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:14:49 Heat of formation + Delta-G solvation = -71.466590 kcal Electronic energy + Delta-G solvation = -26630.418325 eV Core-core repulsion = 22714.517618 eV Total energy + Delta-G solvation = -3915.900706 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.06870 -41.81157 -39.78590 -38.15222 -37.75395 -36.69104 -34.73061 -33.71796 -32.68502 -31.84909 -31.56051 -27.88193 -26.20833 -25.77988 -24.46217 -23.73698 -23.26075 -22.77161 -21.57114 -20.80563 -19.35716 -18.76783 -18.67025 -18.38227 -17.67543 -17.59686 -16.64697 -16.48605 -16.15310 -15.91744 -15.62489 -15.33172 -15.29709 -14.96606 -14.83145 -14.65864 -14.54743 -14.02867 -13.87814 -13.72478 -13.51836 -13.29774 -13.25811 -13.01967 -12.92090 -12.56845 -12.29406 -12.26755 -12.11035 -11.88480 -11.84345 -11.74545 -11.59250 -11.46676 -11.30047 -11.17096 -11.03575 -10.63384 -10.01541 -9.06659 -4.90413 0.06373 0.15640 1.09583 1.32423 1.61932 1.63873 1.86488 1.97654 2.77569 3.15375 3.43089 3.43961 3.59309 3.64954 3.67042 3.76954 3.88390 3.92667 3.94645 3.99379 4.02868 4.16926 4.20368 4.27279 4.31043 4.39306 4.46935 4.50686 4.58739 4.70874 4.73665 4.79981 4.81576 4.84467 4.87671 4.98143 5.07974 5.10885 5.11887 5.17379 5.22102 5.25109 5.35139 5.43086 5.49700 5.77736 6.05269 6.41315 6.64799 6.65602 7.28638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.543 6.543 6 C -0.075 4.075 7 H 0.129 0.871 8 C -0.105 4.105 9 C -0.107 4.107 10 C -0.094 4.094 11 H 0.078 0.922 12 C 0.147 3.853 13 N -0.690 5.690 14 C 0.550 3.450 15 N -0.577 5.577 16 C 0.192 3.808 17 C -0.250 4.250 18 C -0.059 4.059 19 O -0.560 6.560 20 Si 0.755 3.245 21 C 0.212 3.788 22 N -0.590 5.590 23 C -0.103 4.103 24 C -0.100 4.100 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.418 0.582 37 H 0.183 0.817 38 H 0.103 0.897 39 H 0.397 0.603 40 H -0.282 1.282 41 H -0.297 1.297 42 H 0.184 0.816 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.059 0.941 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.004 4.206 -2.035 6.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.433 6.433 6 C -0.094 4.094 7 H 0.146 0.854 8 C -0.143 4.143 9 C -0.144 4.144 10 C -0.113 4.113 11 H 0.096 0.904 12 C 0.023 3.977 13 N -0.327 5.327 14 C 0.193 3.807 15 N -0.300 5.300 16 C 0.025 3.975 17 C -0.258 4.258 18 C -0.170 4.170 19 O -0.371 6.371 20 Si 0.660 3.340 21 C 0.045 3.955 22 N -0.312 5.312 23 C -0.141 4.141 24 C -0.138 4.138 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.256 0.744 37 H 0.199 0.801 38 H 0.121 0.879 39 H 0.248 0.752 40 H -0.208 1.208 41 H -0.225 1.225 42 H 0.201 0.799 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.078 0.922 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.490 2.487 -2.734 5.083 hybrid contribution 0.815 0.563 1.602 1.883 sum -2.675 3.050 -1.132 4.212 Atomic orbital electron populations 1.21818 0.90622 1.04241 1.03778 1.23233 0.96971 0.79509 1.02316 1.86520 1.24378 1.33302 1.83485 1.24453 0.80485 0.93486 0.70891 1.90665 1.61166 1.44584 1.46875 1.21265 0.96620 0.88043 1.03479 0.85351 1.21491 1.01715 0.95902 0.95149 1.21570 0.93802 0.95509 1.03569 1.21398 0.96040 0.93968 0.99917 0.90405 1.21378 0.99764 0.91806 0.84758 1.44263 1.57334 1.09058 1.22068 1.19670 0.87470 0.88052 0.85506 1.67967 1.17454 1.11503 1.33086 1.23130 0.91020 0.88298 0.95084 1.20804 1.07028 0.99447 0.98494 1.24581 0.97620 0.95504 0.99256 1.86546 1.64123 1.36499 1.49901 0.94354 0.82411 0.76137 0.81074 1.23160 0.87181 0.87366 0.97811 1.67999 1.29067 1.12942 1.21212 1.21449 1.01128 0.93737 0.97773 1.21389 0.91543 0.97891 1.02942 0.91213 0.91176 0.88633 0.91544 0.91630 0.89933 0.91887 0.90867 0.90277 0.92120 0.91003 0.74351 0.80052 0.87879 0.75245 1.20829 1.22474 0.79865 0.90513 0.89855 0.92182 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.47 10.29 71.98 0.74 1.22 16 2 C 0.05 0.09 6.19 71.98 0.45 0.54 16 3 O -0.36 -1.41 10.12 -51.42 -0.52 -1.93 16 4 C 0.46 2.31 7.26 71.24 0.52 2.83 16 5 O -0.54 -6.37 15.73 21.97 0.35 -6.03 16 6 C -0.08 0.14 2.63 -11.54 -0.03 0.11 16 7 H 0.13 -0.68 8.14 -2.39 -0.02 -0.70 16 8 C -0.10 0.43 5.14 30.59 0.16 0.58 16 9 C -0.11 0.66 5.08 30.60 0.16 0.81 16 10 C -0.09 0.50 2.23 -10.79 -0.02 0.47 16 11 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 12 C 0.15 -0.33 5.04 86.38 0.44 0.11 16 13 N -0.69 -0.77 5.43 -351.04 -1.91 -2.67 16 14 C 0.55 3.48 8.43 261.48 2.20 5.68 16 15 N -0.58 -3.57 9.59 -197.98 -1.90 -5.47 16 16 C 0.19 0.54 9.92 84.72 0.84 1.38 16 17 C -0.25 -0.45 5.40 -19.69 -0.11 -0.55 16 18 C -0.06 0.18 2.82 71.23 0.20 0.38 16 19 O -0.56 0.02 12.82 -148.98 -1.91 -1.89 16 20 Si 0.76 -3.05 29.92 68.60 2.05 -1.00 16 21 C 0.21 0.76 10.99 84.71 0.93 1.69 16 22 N -0.59 -4.11 10.46 -197.99 -2.07 -6.18 16 23 C -0.10 0.54 5.20 30.59 0.16 0.70 16 24 C -0.10 0.14 4.49 30.59 0.14 0.28 16 25 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 26 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 27 H 0.10 -0.57 8.14 -2.39 -0.02 -0.59 16 28 H 0.07 0.15 8.13 -2.39 -0.02 0.13 16 29 H 0.07 0.16 8.13 -2.39 -0.02 0.14 16 30 H 0.08 -0.35 8.11 -2.39 -0.02 -0.36 16 31 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.07 -0.44 7.18 -2.39 -0.02 -0.46 16 33 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 34 H 0.06 0.00 8.14 -2.38 -0.02 -0.02 16 35 H 0.07 -0.14 8.14 -2.38 -0.02 -0.16 16 36 H 0.42 -0.44 7.77 -92.71 -0.72 -1.16 16 37 H 0.18 -0.37 5.04 -2.91 -0.01 -0.38 16 38 H 0.10 -0.81 7.96 -2.39 -0.02 -0.83 16 39 H 0.40 -3.20 8.74 -74.06 -0.65 -3.85 16 40 H -0.28 -0.01 7.11 99.48 0.71 0.70 16 41 H -0.30 -1.00 7.06 99.48 0.70 -0.30 16 42 H 0.18 -0.18 8.06 -2.91 -0.02 -0.20 16 43 H 0.08 -0.39 8.14 -2.38 -0.02 -0.41 16 44 H 0.08 -0.59 8.14 -2.39 -0.02 -0.60 16 45 H 0.06 0.09 8.10 -2.39 -0.02 0.07 16 46 H 0.07 0.04 8.10 -2.39 -0.02 0.02 16 Total: 0.00 -20.03 374.22 0.51 -19.52 By element: Atomic # 1 Polarization: -10.21 SS G_CDS: -0.34 Total: -10.55 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 6.76 Total: 16.22 kcal Atomic # 7 Polarization: -8.45 SS G_CDS: -5.88 Total: -14.33 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -2.09 Total: -9.85 kcal Atomic # 14 Polarization: -3.05 SS G_CDS: 2.05 Total: -1.00 kcal Total: -20.03 0.51 -19.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14654748_12175864.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.951 kcal (2) G-P(sol) polarization free energy of solvation -20.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds