Wall clock time and date at job start Mon Mar 8 2021 07:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45193 * 109.47265 * 2 1 4 4 C 1.34229 * 117.00401 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99612 * 359.97438 * 4 3 2 6 6 C 1.50694 * 120.00341 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47339 * 300.00043 * 6 4 3 8 8 C 1.52997 * 109.47414 * 59.99841 * 6 4 3 9 9 C 1.52997 * 109.47756 * 180.02562 * 8 6 4 10 10 C 1.53008 * 109.46806 * 300.00127 * 9 8 6 11 11 H 1.09004 * 109.46843 * 299.99584 * 10 9 8 12 12 C 1.52993 * 109.46954 * 179.97438 * 10 9 8 13 13 N 1.46501 * 109.47116 * 64.99832 * 12 10 9 14 14 C 1.39009 * 119.99795 * 179.97438 * 13 12 10 15 15 N 1.32400 * 119.69949 * 179.97438 * 14 13 12 16 16 C 1.31974 * 121.61845 * 180.02562 * 15 14 13 17 17 C 1.38021 * 120.85871 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.33724 * 180.02562 * 17 16 15 19 19 O 1.42903 * 109.47134 * 245.00372 * 18 17 16 20 20 Si 1.86300 * 109.47291 * 5.00449 * 18 17 16 21 21 C 1.38895 * 119.32843 * 359.77136 * 17 16 15 22 22 C 1.38297 * 118.50224 * 0.49773 * 21 17 16 23 23 C 1.52997 * 109.47248 * 59.99799 * 10 9 8 24 24 C 1.52997 * 109.47420 * 179.97438 * 6 4 3 25 25 H 1.09000 * 109.47111 * 60.00017 * 1 2 3 26 26 H 1.09003 * 109.47234 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46613 * 299.99858 * 1 2 3 28 28 H 1.08998 * 109.47108 * 239.99828 * 2 1 3 29 29 H 1.09000 * 109.47111 * 119.99983 * 2 1 3 30 30 H 1.09002 * 109.47145 * 300.00391 * 8 6 4 31 31 H 1.09004 * 109.47181 * 59.99829 * 8 6 4 32 32 H 1.09002 * 109.47558 * 180.02562 * 9 8 6 33 33 H 1.09004 * 109.47079 * 59.99566 * 9 8 6 34 34 H 1.09001 * 109.47386 * 304.99897 * 12 10 9 35 35 H 1.09003 * 109.47313 * 184.99557 * 12 10 9 36 36 H 0.96994 * 120.00385 * 0.02562 * 13 12 10 37 37 H 1.08004 * 119.57090 * 180.02562 * 16 15 14 38 38 H 1.09002 * 109.46873 * 125.00350 * 18 17 16 39 39 H 0.96691 * 114.00180 * 60.00060 * 19 18 17 40 40 H 1.48499 * 110.00029 * 180.02562 * 20 18 17 41 41 H 1.48505 * 109.99709 * 301.31867 * 20 18 17 42 42 H 1.07995 * 120.74910 * 180.25210 * 21 17 16 43 43 H 1.08002 * 120.45299 * 179.76047 * 22 21 17 44 44 H 1.08999 * 109.47473 * 59.99632 * 23 10 9 45 45 H 1.08998 * 109.47419 * 180.02562 * 23 10 9 46 46 H 1.09003 * 109.47092 * 59.99733 * 24 6 4 47 47 H 1.09000 * 109.47072 * 300.00418 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9208 2.9373 -0.0012 7 1 3.5845 3.4692 -0.8912 8 6 3.4497 3.6847 1.2480 9 6 4.0339 5.0987 1.2471 10 6 5.5619 5.0192 1.2463 11 1 5.8985 4.4875 2.1364 12 6 6.1462 6.4331 1.2448 13 7 5.7939 7.1084 2.4962 14 6 6.2172 8.4125 2.7253 15 7 5.8950 9.0174 3.8581 16 6 6.2762 10.2546 4.1146 17 6 7.0304 10.9662 3.2037 18 6 7.4598 12.3781 3.5090 19 8 6.8384 13.2750 2.5862 20 14 6.9490 12.8210 5.2450 21 6 7.3941 10.3660 2.0051 22 6 6.9752 9.0707 1.7619 23 6 6.0331 4.2718 -0.0029 24 6 5.4486 2.8573 -0.0010 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.3612 3.7417 1.2484 31 1 3.7859 3.1528 2.1381 32 1 3.6987 5.6310 2.1373 33 1 3.6974 5.6304 0.3570 34 1 5.7398 6.9934 0.4027 35 1 7.2311 6.3779 1.1547 36 1 5.2659 6.6454 3.1652 37 1 5.9950 10.7159 5.0498 38 1 8.5432 12.4561 3.4180 39 1 5.8720 13.2588 2.6121 40 1 7.3662 14.2113 5.5581 41 1 5.4771 12.6878 5.3909 42 1 7.9873 10.9003 1.2778 43 1 7.2367 8.5751 0.8386 44 1 5.6964 4.8034 -0.8929 45 1 7.1216 4.2147 -0.0033 46 1 5.7847 2.3247 -0.8908 47 1 5.7845 2.3255 0.8892 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14654748_13915762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:14:53 Heat of formation + Delta-G solvation = -94.824218 kcal Electronic energy + Delta-G solvation = -26516.279581 eV Core-core repulsion = 22664.791922 eV Total energy + Delta-G solvation = -3851.487658 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.177 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.77204 -41.35598 -39.86842 -38.14952 -37.61412 -36.55746 -33.71504 -33.20324 -32.52966 -31.96346 -31.01436 -27.83252 -25.98004 -24.97905 -24.43723 -23.85178 -23.26330 -22.35163 -21.57816 -20.93295 -18.73030 -18.65582 -18.53567 -17.61387 -17.57250 -17.49071 -16.43371 -16.40490 -16.19112 -15.87211 -15.65372 -15.42759 -15.22883 -14.96497 -14.80677 -14.59600 -14.30015 -14.02953 -13.98963 -13.83775 -13.58870 -13.43313 -13.28611 -13.13196 -12.90753 -12.61736 -12.43096 -12.36540 -12.29785 -11.99188 -11.87457 -11.64925 -11.50733 -11.36231 -11.18344 -11.11331 -10.71361 -10.51368 -10.33659 -8.70470 -4.93838 0.27538 0.44926 1.21332 1.32043 1.60782 1.64714 1.98614 2.07505 2.88110 3.32096 3.40250 3.42857 3.48923 3.62507 3.73810 3.79661 3.80849 3.91608 3.94519 3.98804 4.05403 4.11791 4.13923 4.19093 4.24604 4.27494 4.31131 4.34207 4.44536 4.51146 4.58162 4.62737 4.67852 4.76461 4.78114 4.79007 4.89097 4.91284 4.98556 4.98932 5.03235 5.03456 5.13122 5.25555 5.32024 5.48634 5.52962 5.99428 6.43848 6.52765 6.76601 7.18117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.358 6.358 4 C 0.464 3.536 5 O -0.506 6.506 6 C -0.079 4.079 7 H 0.110 0.890 8 C -0.111 4.111 9 C -0.113 4.113 10 C -0.102 4.102 11 H 0.082 0.918 12 C 0.131 3.869 13 N -0.722 5.722 14 C 0.408 3.592 15 N -0.540 5.540 16 C 0.155 3.845 17 C -0.235 4.235 18 C -0.059 4.059 19 O -0.532 6.532 20 Si 0.679 3.321 21 C -0.005 4.005 22 C -0.239 4.239 23 C -0.110 4.110 24 C -0.104 4.104 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.406 0.594 37 H 0.155 0.845 38 H 0.116 0.884 39 H 0.375 0.625 40 H -0.256 1.256 41 H -0.259 1.259 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.750 -1.227 -0.640 1.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.275 6.275 4 C 0.307 3.693 5 O -0.394 6.394 6 C -0.098 4.098 7 H 0.128 0.872 8 C -0.149 4.149 9 C -0.151 4.151 10 C -0.120 4.120 11 H 0.101 0.899 12 C 0.007 3.993 13 N -0.355 5.355 14 C 0.172 3.828 15 N -0.257 5.257 16 C -0.003 4.003 17 C -0.240 4.240 18 C -0.170 4.170 19 O -0.338 6.338 20 Si 0.581 3.419 21 C -0.031 4.031 22 C -0.264 4.264 23 C -0.148 4.148 24 C -0.141 4.141 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.242 0.758 37 H 0.171 0.829 38 H 0.134 0.866 39 H 0.223 0.777 40 H -0.181 1.181 41 H -0.184 1.184 42 H 0.153 0.847 43 H 0.150 0.850 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.094 0.906 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.851 -1.436 0.134 1.675 hybrid contribution -0.540 0.223 -1.280 1.407 sum -1.391 -1.214 -1.146 2.173 Atomic orbital electron populations 1.21822 0.92337 1.03260 1.03637 1.23073 0.95592 0.79921 1.02708 1.86505 1.24490 1.32685 1.83788 1.23800 0.80651 0.92712 0.72176 1.90685 1.60471 1.43194 1.45018 1.21151 0.96847 0.89652 1.02176 0.87213 1.21532 1.01614 0.95672 0.96035 1.21611 0.94207 0.96158 1.03091 1.21450 0.95937 0.94611 1.00036 0.89935 1.21484 0.99832 0.92249 0.85783 1.44530 1.58961 1.11088 1.20940 1.18399 0.89255 0.85908 0.89239 1.67164 1.26669 1.11612 1.20286 1.22263 0.91636 0.88844 0.97525 1.20911 1.06488 0.98726 0.97872 1.24751 1.01682 0.86442 1.04101 1.86593 1.24417 1.62665 1.60164 0.95106 0.82865 0.84767 0.79165 1.21198 0.93819 0.92903 0.95151 1.21452 1.06338 0.96988 1.01576 1.21521 1.01079 0.94896 0.97311 1.21447 0.91449 0.97120 1.04100 0.91376 0.90017 0.91378 0.91144 0.91147 0.90208 0.91173 0.91038 0.91083 0.91589 0.91531 0.75819 0.82852 0.86615 0.77749 1.18091 1.18354 0.84715 0.84951 0.91075 0.90648 0.90565 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.25 10.29 37.16 0.38 0.64 16 2 C 0.06 0.02 6.19 37.16 0.23 0.25 16 3 O -0.36 -0.53 10.12 -39.26 -0.40 -0.92 16 4 C 0.46 0.81 7.26 36.00 0.26 1.07 16 5 O -0.51 -2.40 15.73 -18.75 -0.29 -2.69 16 6 C -0.08 0.11 2.63 -91.78 -0.24 -0.13 16 7 H 0.11 -0.28 8.14 -51.93 -0.42 -0.70 16 8 C -0.11 0.25 5.13 -26.73 -0.14 0.11 16 9 C -0.11 0.36 5.08 -26.73 -0.14 0.23 16 10 C -0.10 0.35 2.23 -90.62 -0.20 0.15 16 11 H 0.08 -0.24 8.14 -51.93 -0.42 -0.67 16 12 C 0.13 -0.38 4.28 -4.04 -0.02 -0.39 16 13 N -0.72 0.62 5.46 -60.42 -0.33 0.29 16 14 C 0.41 0.56 7.65 -155.01 -1.19 -0.62 16 15 N -0.54 -1.42 10.39 -12.43 -0.13 -1.55 16 16 C 0.16 0.19 9.84 -17.57 -0.17 0.01 16 17 C -0.23 -0.13 5.36 -104.46 -0.56 -0.69 16 18 C -0.06 0.01 2.82 36.00 0.10 0.11 16 19 O -0.53 -0.68 12.84 -35.23 -0.45 -1.13 16 20 Si 0.68 -0.57 29.91 -169.99 -5.08 -5.65 16 21 C 0.00 0.00 9.84 -39.32 -0.39 -0.39 16 22 C -0.24 -0.11 9.33 -39.23 -0.37 -0.47 16 23 C -0.11 0.38 5.21 -26.71 -0.14 0.24 16 24 C -0.10 0.16 4.50 -26.71 -0.12 0.04 16 25 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 26 H 0.08 -0.23 8.14 -51.93 -0.42 -0.66 16 27 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 28 H 0.07 0.03 8.13 -51.93 -0.42 -0.40 16 29 H 0.07 0.03 8.13 -51.93 -0.42 -0.40 16 30 H 0.08 -0.16 8.11 -51.93 -0.42 -0.58 16 31 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 32 H 0.07 -0.21 7.18 -51.93 -0.37 -0.58 16 33 H 0.07 -0.23 8.14 -51.93 -0.42 -0.65 16 34 H 0.07 -0.20 7.93 -51.93 -0.41 -0.61 16 35 H 0.07 -0.20 7.93 -51.93 -0.41 -0.61 16 36 H 0.41 -0.47 7.78 -40.82 -0.32 -0.79 16 37 H 0.15 -0.08 4.85 -52.48 -0.25 -0.34 16 38 H 0.12 -0.11 7.96 -51.93 -0.41 -0.52 16 39 H 0.37 -0.51 8.70 45.56 0.40 -0.12 16 40 H -0.26 -0.62 7.11 56.52 0.40 -0.22 16 41 H -0.26 -0.27 7.01 56.52 0.40 0.12 16 42 H 0.13 -0.09 8.06 -52.49 -0.42 -0.51 16 43 H 0.13 -0.18 6.71 -52.49 -0.35 -0.53 16 44 H 0.07 -0.28 8.14 -51.93 -0.42 -0.70 16 45 H 0.07 -0.27 8.14 -51.93 -0.42 -0.70 16 46 H 0.08 -0.06 8.10 -51.93 -0.42 -0.48 16 47 H 0.07 -0.03 8.10 -51.93 -0.42 -0.46 16 LS Contribution 377.13 15.07 5.68 5.68 Total: 0.00 -7.14 377.13 -11.37 -18.51 By element: Atomic # 1 Polarization: -5.02 SS G_CDS: -7.67 Total: -12.70 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -2.69 Total: 0.16 kcal Atomic # 7 Polarization: -0.80 SS G_CDS: -0.46 Total: -1.26 kcal Atomic # 8 Polarization: -3.60 SS G_CDS: -1.14 Total: -4.74 kcal Atomic # 14 Polarization: -0.57 SS G_CDS: -5.08 Total: -5.65 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -7.14 -11.37 -18.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14654748_13915762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.313 kcal (2) G-P(sol) polarization free energy of solvation -7.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds