Wall clock time and date at job start Mon Mar 8 2021 07:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45193 * 109.47265 * 2 1 4 4 C 1.34229 * 117.00401 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99612 * 359.97438 * 4 3 2 6 6 C 1.50694 * 120.00341 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47339 * 300.00043 * 6 4 3 8 8 C 1.52997 * 109.47414 * 59.99841 * 6 4 3 9 9 C 1.52997 * 109.47756 * 180.02562 * 8 6 4 10 10 C 1.53008 * 109.46806 * 300.00127 * 9 8 6 11 11 H 1.09004 * 109.46843 * 299.99584 * 10 9 8 12 12 C 1.52993 * 109.46954 * 179.97438 * 10 9 8 13 13 N 1.46501 * 109.47116 * 64.99832 * 12 10 9 14 14 C 1.39009 * 119.99795 * 179.97438 * 13 12 10 15 15 N 1.32400 * 119.69949 * 179.97438 * 14 13 12 16 16 C 1.31974 * 121.61845 * 180.02562 * 15 14 13 17 17 C 1.38021 * 120.85871 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.33724 * 180.02562 * 17 16 15 19 19 O 1.42903 * 109.47134 * 245.00372 * 18 17 16 20 20 Si 1.86300 * 109.47291 * 5.00449 * 18 17 16 21 21 C 1.38895 * 119.32843 * 359.77136 * 17 16 15 22 22 C 1.38297 * 118.50224 * 0.49773 * 21 17 16 23 23 C 1.52997 * 109.47248 * 59.99799 * 10 9 8 24 24 C 1.52997 * 109.47420 * 179.97438 * 6 4 3 25 25 H 1.09000 * 109.47111 * 60.00017 * 1 2 3 26 26 H 1.09003 * 109.47234 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46613 * 299.99858 * 1 2 3 28 28 H 1.08998 * 109.47108 * 239.99828 * 2 1 3 29 29 H 1.09000 * 109.47111 * 119.99983 * 2 1 3 30 30 H 1.09002 * 109.47145 * 300.00391 * 8 6 4 31 31 H 1.09004 * 109.47181 * 59.99829 * 8 6 4 32 32 H 1.09002 * 109.47558 * 180.02562 * 9 8 6 33 33 H 1.09004 * 109.47079 * 59.99566 * 9 8 6 34 34 H 1.09001 * 109.47386 * 304.99897 * 12 10 9 35 35 H 1.09003 * 109.47313 * 184.99557 * 12 10 9 36 36 H 0.96994 * 120.00385 * 0.02562 * 13 12 10 37 37 H 1.08004 * 119.57090 * 180.02562 * 16 15 14 38 38 H 1.09002 * 109.46873 * 125.00350 * 18 17 16 39 39 H 0.96691 * 114.00180 * 60.00060 * 19 18 17 40 40 H 1.48499 * 110.00029 * 180.02562 * 20 18 17 41 41 H 1.48505 * 109.99709 * 301.31867 * 20 18 17 42 42 H 1.07995 * 120.74910 * 180.25210 * 21 17 16 43 43 H 1.08002 * 120.45299 * 179.76047 * 22 21 17 44 44 H 1.08999 * 109.47473 * 59.99632 * 23 10 9 45 45 H 1.08998 * 109.47419 * 180.02562 * 23 10 9 46 46 H 1.09003 * 109.47092 * 59.99733 * 24 6 4 47 47 H 1.09000 * 109.47072 * 300.00418 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9208 2.9373 -0.0012 7 1 3.5845 3.4692 -0.8912 8 6 3.4497 3.6847 1.2480 9 6 4.0339 5.0987 1.2471 10 6 5.5619 5.0192 1.2463 11 1 5.8985 4.4875 2.1364 12 6 6.1462 6.4331 1.2448 13 7 5.7939 7.1084 2.4962 14 6 6.2172 8.4125 2.7253 15 7 5.8950 9.0174 3.8581 16 6 6.2762 10.2546 4.1146 17 6 7.0304 10.9662 3.2037 18 6 7.4598 12.3781 3.5090 19 8 6.8384 13.2750 2.5862 20 14 6.9490 12.8210 5.2450 21 6 7.3941 10.3660 2.0051 22 6 6.9752 9.0707 1.7619 23 6 6.0331 4.2718 -0.0029 24 6 5.4486 2.8573 -0.0010 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.3612 3.7417 1.2484 31 1 3.7859 3.1528 2.1381 32 1 3.6987 5.6310 2.1373 33 1 3.6974 5.6304 0.3570 34 1 5.7398 6.9934 0.4027 35 1 7.2311 6.3779 1.1547 36 1 5.2659 6.6454 3.1652 37 1 5.9950 10.7159 5.0498 38 1 8.5432 12.4561 3.4180 39 1 5.8720 13.2588 2.6121 40 1 7.3662 14.2113 5.5581 41 1 5.4771 12.6878 5.3909 42 1 7.9873 10.9003 1.2778 43 1 7.2367 8.5751 0.8386 44 1 5.6964 4.8034 -0.8929 45 1 7.1216 4.2147 -0.0033 46 1 5.7847 2.3247 -0.8908 47 1 5.7845 2.3255 0.8892 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14654748_13915762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:14:52 Heat of formation + Delta-G solvation = -90.268381 kcal Electronic energy + Delta-G solvation = -26516.082025 eV Core-core repulsion = 22664.791922 eV Total energy + Delta-G solvation = -3851.290102 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.177 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.84984 -41.35909 -39.75335 -38.16204 -37.74050 -36.51813 -33.68256 -33.18243 -32.47919 -31.78812 -30.96394 -27.74088 -25.95581 -24.94637 -24.39881 -23.67636 -23.23777 -22.34387 -21.49786 -20.78956 -18.77202 -18.64658 -18.55026 -17.69370 -17.60108 -17.50565 -16.42622 -16.31145 -16.14774 -15.77637 -15.56102 -15.39365 -15.13537 -14.91332 -14.70610 -14.61669 -14.34731 -13.99532 -13.90635 -13.70769 -13.49509 -13.32122 -13.24227 -13.00040 -12.91955 -12.58052 -12.43402 -12.26819 -12.12063 -12.03983 -11.82195 -11.60285 -11.46301 -11.23812 -11.17532 -10.99508 -10.71688 -10.52464 -10.36775 -8.65374 -4.89920 0.26602 0.43840 1.08239 1.35241 1.61068 1.62969 1.97256 2.17456 2.86433 3.41627 3.48080 3.58884 3.64867 3.65692 3.81565 3.85347 3.93336 3.98650 4.01311 4.03844 4.11501 4.20883 4.25108 4.29557 4.38291 4.38774 4.47421 4.49761 4.62342 4.68130 4.71205 4.79022 4.80575 4.83567 4.86266 4.96923 5.03893 5.07435 5.10198 5.12026 5.17682 5.21958 5.32092 5.34846 5.41960 5.48406 5.57925 6.07005 6.51888 6.57981 6.64252 7.18622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.361 6.361 4 C 0.461 3.539 5 O -0.543 6.543 6 C -0.075 4.075 7 H 0.128 0.872 8 C -0.106 4.106 9 C -0.108 4.108 10 C -0.093 4.093 11 H 0.077 0.923 12 C 0.133 3.867 13 N -0.719 5.719 14 C 0.395 3.605 15 N -0.567 5.567 16 C 0.144 3.856 17 C -0.236 4.236 18 C -0.062 4.062 19 O -0.550 6.550 20 Si 0.755 3.245 21 C -0.012 4.012 22 C -0.241 4.241 23 C -0.103 4.103 24 C -0.101 4.101 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.405 0.595 37 H 0.164 0.836 38 H 0.125 0.875 39 H 0.384 0.616 40 H -0.301 1.301 41 H -0.284 1.284 42 H 0.146 0.854 43 H 0.150 0.850 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.735 -0.852 -1.285 1.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.278 6.278 4 C 0.306 3.694 5 O -0.432 6.432 6 C -0.094 4.094 7 H 0.145 0.855 8 C -0.143 4.143 9 C -0.145 4.145 10 C -0.112 4.112 11 H 0.095 0.905 12 C 0.009 3.991 13 N -0.351 5.351 14 C 0.158 3.842 15 N -0.285 5.285 16 C -0.013 4.013 17 C -0.241 4.241 18 C -0.172 4.172 19 O -0.357 6.357 20 Si 0.661 3.339 21 C -0.038 4.038 22 C -0.266 4.266 23 C -0.141 4.141 24 C -0.139 4.139 25 H 0.088 0.912 26 H 0.114 0.886 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.242 0.758 37 H 0.181 0.819 38 H 0.143 0.857 39 H 0.233 0.767 40 H -0.229 1.229 41 H -0.210 1.210 42 H 0.163 0.837 43 H 0.168 0.832 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.849 -1.083 -0.524 1.473 hybrid contribution -0.581 0.083 -1.085 1.233 sum -1.430 -1.000 -1.609 2.374 Atomic orbital electron populations 1.21823 0.90659 1.04251 1.03744 1.23231 0.96947 0.79498 1.02337 1.86518 1.24445 1.33327 1.83488 1.24473 0.80471 0.93541 0.70909 1.90664 1.61146 1.44581 1.46851 1.21265 0.96812 0.87975 1.03351 0.85451 1.21489 1.01601 0.96072 0.95172 1.21570 0.94248 0.95307 1.03390 1.21356 0.95697 0.94304 0.99858 0.90463 1.21559 1.00210 0.92181 0.85154 1.44642 1.58532 1.10465 1.21509 1.18661 0.89601 0.86654 0.89255 1.67162 1.27711 1.12355 1.21254 1.22466 0.91863 0.88795 0.98173 1.20937 1.06399 0.98833 0.97931 1.24884 1.02236 0.85973 1.04138 1.86562 1.25455 1.63023 1.60699 0.94202 0.80272 0.81627 0.77774 1.21415 0.93865 0.93141 0.95341 1.21653 1.05918 0.97014 1.02010 1.21480 1.01330 0.93561 0.97754 1.21412 0.91364 0.98168 1.02929 0.91205 0.88605 0.91249 0.91516 0.91605 0.90243 0.91954 0.91122 0.90371 0.90817 0.91010 0.75831 0.81930 0.85699 0.76666 1.22876 1.21041 0.83668 0.83223 0.89819 0.90073 0.91503 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.50 10.29 71.98 0.74 1.24 16 2 C 0.05 0.08 6.19 71.98 0.45 0.52 16 3 O -0.36 -1.31 10.12 -51.41 -0.52 -1.83 16 4 C 0.46 2.06 7.26 71.23 0.52 2.57 16 5 O -0.54 -6.02 15.73 21.97 0.35 -5.68 16 6 C -0.08 0.20 2.63 -11.54 -0.03 0.17 16 7 H 0.13 -0.77 8.14 -2.39 -0.02 -0.79 16 8 C -0.11 0.49 5.13 30.59 0.16 0.65 16 9 C -0.11 0.78 5.08 30.60 0.16 0.93 16 10 C -0.09 0.72 2.23 -10.79 -0.02 0.70 16 11 H 0.08 -0.48 8.14 -2.38 -0.02 -0.50 16 12 C 0.13 -0.93 4.28 86.38 0.37 -0.56 16 13 N -0.72 1.64 5.46 -345.07 -1.88 -0.24 16 14 C 0.39 0.94 7.65 133.06 1.02 1.96 16 15 N -0.57 -3.05 10.39 -193.25 -2.01 -5.06 16 16 C 0.14 0.36 9.84 84.62 0.83 1.19 16 17 C -0.24 -0.19 5.36 -19.76 -0.11 -0.30 16 18 C -0.06 0.04 2.82 71.24 0.20 0.24 16 19 O -0.55 -1.29 12.84 -148.98 -1.91 -3.21 16 20 Si 0.76 -1.05 29.91 68.60 2.05 1.00 16 21 C -0.01 0.00 9.84 22.44 0.22 0.22 16 22 C -0.24 0.00 9.33 22.50 0.21 0.21 16 23 C -0.10 0.81 5.21 30.61 0.16 0.97 16 24 C -0.10 0.29 4.50 30.61 0.14 0.43 16 25 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 26 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 27 H 0.07 -0.24 8.14 -2.38 -0.02 -0.26 16 28 H 0.07 0.13 8.13 -2.39 -0.02 0.11 16 29 H 0.07 0.14 8.13 -2.39 -0.02 0.12 16 30 H 0.08 -0.34 8.11 -2.39 -0.02 -0.36 16 31 H 0.06 -0.18 8.14 -2.38 -0.02 -0.20 16 32 H 0.07 -0.46 7.18 -2.39 -0.02 -0.47 16 33 H 0.08 -0.63 8.14 -2.38 -0.02 -0.65 16 34 H 0.07 -0.59 7.93 -2.39 -0.02 -0.61 16 35 H 0.07 -0.54 7.93 -2.39 -0.02 -0.56 16 36 H 0.41 -1.01 7.78 -92.71 -0.72 -1.73 16 37 H 0.16 -0.14 4.85 -2.91 -0.01 -0.16 16 38 H 0.13 -0.32 7.96 -2.39 -0.02 -0.34 16 39 H 0.38 -1.04 8.70 -74.06 -0.64 -1.69 16 40 H -0.30 -1.83 7.11 99.48 0.71 -1.12 16 41 H -0.28 -0.74 7.01 99.48 0.70 -0.05 16 42 H 0.15 -0.33 8.06 -2.91 -0.02 -0.36 16 43 H 0.15 -0.64 6.71 -2.91 -0.02 -0.66 16 44 H 0.08 -0.81 8.14 -2.39 -0.02 -0.83 16 45 H 0.08 -0.68 8.14 -2.39 -0.02 -0.70 16 46 H 0.07 -0.05 8.10 -2.39 -0.02 -0.07 16 47 H 0.06 0.01 8.10 -2.39 -0.02 -0.01 16 Total: 0.00 -17.35 377.13 0.71 -16.63 By element: Atomic # 1 Polarization: -12.40 SS G_CDS: -0.36 Total: -12.76 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 5.00 Total: 11.14 kcal Atomic # 7 Polarization: -1.41 SS G_CDS: -3.89 Total: -5.30 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -2.09 Total: -10.72 kcal Atomic # 14 Polarization: -1.05 SS G_CDS: 2.05 Total: 1.00 kcal Total: -17.35 0.71 -16.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14654748_13915762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.634 kcal (2) G-P(sol) polarization free energy of solvation -17.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds