Wall clock time and date at job start Mon Mar 8 2021 07:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45192 * 109.47109 * 2 1 4 4 C 1.34230 * 117.00018 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00015 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00046 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.46793 * 60.00715 * 6 4 3 8 8 C 1.53002 * 109.46958 * 180.02562 * 6 4 3 9 9 C 1.52997 * 109.46978 * 179.97438 * 8 6 4 10 10 C 1.53002 * 109.47415 * 300.00098 * 9 8 6 11 11 H 1.09002 * 109.47070 * 300.00053 * 10 9 8 12 12 C 1.53000 * 109.47233 * 179.97438 * 10 9 8 13 13 N 1.46506 * 109.46901 * 174.99970 * 12 10 9 14 14 C 1.38612 * 119.99679 * 180.02562 * 13 12 10 15 15 N 1.29684 * 124.95023 * 0.02562 * 14 13 12 16 16 C 1.32125 * 116.86526 * 179.97438 * 15 14 13 17 17 C 1.33324 * 114.57962 * 0.02562 * 16 15 14 18 18 C 1.50698 * 125.95376 * 180.02562 * 17 16 15 19 19 O 1.42907 * 109.46661 * 299.99828 * 18 17 16 20 20 Si 1.86299 * 109.47418 * 179.97438 * 18 17 16 21 21 S 1.70967 * 124.94709 * 179.72328 * 14 13 12 22 22 C 1.52997 * 109.46817 * 59.99873 * 10 9 8 23 23 C 1.52992 * 109.47482 * 300.00014 * 22 10 9 24 24 H 1.09005 * 109.47066 * 60.00281 * 1 2 3 25 25 H 1.09003 * 109.46881 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46992 * 299.99805 * 1 2 3 27 27 H 1.08998 * 109.47230 * 239.99698 * 2 1 3 28 28 H 1.09001 * 109.46829 * 120.00434 * 2 1 3 29 29 H 1.09002 * 109.47097 * 60.00192 * 8 6 4 30 30 H 1.08998 * 109.47844 * 300.00407 * 8 6 4 31 31 H 1.09000 * 109.47140 * 180.02562 * 9 8 6 32 32 H 1.09002 * 109.47497 * 60.00450 * 9 8 6 33 33 H 1.08990 * 109.47170 * 295.00238 * 12 10 9 34 34 H 1.09001 * 109.46952 * 55.00315 * 12 10 9 35 35 H 0.97000 * 119.99867 * 0.02562 * 13 12 10 36 36 H 1.07997 * 122.70957 * 180.02562 * 16 15 14 37 37 H 1.09006 * 109.47110 * 59.99202 * 18 17 16 38 38 H 0.96695 * 113.99858 * 299.99565 * 19 18 17 39 39 H 1.48503 * 109.99909 * 58.68013 * 20 18 17 40 40 H 1.48499 * 110.00008 * 179.97438 * 20 18 17 41 41 H 1.09002 * 109.47153 * 60.00231 * 22 10 9 42 42 H 1.08998 * 109.47533 * 179.97438 * 22 10 9 43 43 H 1.09002 * 109.47103 * 300.00247 * 23 22 10 44 44 H 1.08996 * 109.47747 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0000 7 1 3.5844 3.4699 0.8896 8 6 5.4486 2.8572 0.0001 9 6 6.0334 4.2710 -0.0011 10 6 5.5619 5.0170 -1.2510 11 1 5.8979 4.4841 -2.1405 12 6 6.1463 6.4310 -1.2518 13 7 5.7935 7.1044 -2.5042 14 6 6.2156 8.4044 -2.7348 15 7 6.9245 9.1124 -1.9114 16 6 7.2388 10.3371 -2.2948 17 6 6.7735 10.6786 -3.4966 18 6 6.9790 12.0056 -4.1806 19 8 6.4245 13.0476 -3.3750 20 14 6.1333 11.9863 -5.8405 21 16 5.8836 9.3055 -4.1493 22 6 4.0341 5.0970 -1.2511 23 6 3.4492 3.6833 -1.2499 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 5.7846 2.3247 -0.8896 30 1 5.7846 2.3254 0.8903 31 1 7.1219 4.2140 -0.0014 32 1 5.6975 4.8040 0.8885 33 1 5.7401 6.9924 -0.4105 34 1 7.2312 6.3759 -1.1620 35 1 5.2647 6.6404 -3.1721 36 1 7.8253 11.0074 -1.6839 37 1 8.0459 12.1818 -4.3187 38 1 5.4762 12.9552 -3.2107 39 1 4.6834 11.7151 -5.6686 40 1 6.3281 13.2897 -6.5249 41 1 3.6981 5.6299 -0.3615 42 1 3.6981 5.6288 -2.1412 43 1 3.7852 3.1504 -2.1394 44 1 2.3608 3.7403 -1.2495 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14654748_15704118.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:14:55 Heat of formation + Delta-G solvation = -82.612680 kcal Electronic energy + Delta-G solvation = -25054.042626 eV Core-core repulsion = 21292.236747 eV Total energy + Delta-G solvation = -3761.805880 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.83572 -40.76091 -39.71754 -38.11654 -37.74334 -36.53765 -33.34026 -32.43412 -31.78260 -31.09458 -27.94067 -26.34941 -24.94674 -24.13131 -23.71324 -23.18090 -21.69714 -20.88962 -20.63153 -19.67763 -18.74300 -18.20184 -17.68072 -17.62707 -17.02990 -16.57204 -16.17838 -16.16862 -15.73265 -15.58561 -15.24066 -15.06324 -14.89730 -14.75945 -14.63980 -13.95381 -13.90603 -13.71728 -13.53626 -13.26374 -13.02034 -12.93078 -12.88468 -12.57133 -12.44830 -12.28489 -12.11908 -12.02533 -11.84115 -11.59538 -11.46953 -11.28892 -11.18312 -11.04590 -10.87406 -10.28092 -10.18077 -8.69624 -5.02586 -0.03079 0.05905 0.69267 1.09328 1.27087 1.56010 1.63449 1.89858 1.99561 2.22861 3.39342 3.41523 3.58699 3.62499 3.71460 3.88389 3.94234 3.95531 3.98368 4.02518 4.16724 4.26600 4.30569 4.38526 4.46473 4.49994 4.59308 4.68625 4.70828 4.73763 4.80745 4.83265 4.87256 4.97618 5.03941 5.09169 5.10878 5.12697 5.18783 5.21537 5.32968 5.42653 5.48868 5.85196 6.18216 6.45344 6.65321 7.04111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.542 6.542 6 C -0.076 4.076 7 H 0.125 0.875 8 C -0.099 4.099 9 C -0.105 4.105 10 C -0.093 4.093 11 H 0.086 0.914 12 C 0.145 3.855 13 N -0.683 5.683 14 C 0.315 3.685 15 N -0.580 5.580 16 C 0.104 3.896 17 C -0.307 4.307 18 C -0.022 4.022 19 O -0.543 6.543 20 Si 0.724 3.276 21 S 0.112 5.888 22 C -0.108 4.108 23 C -0.105 4.105 24 H 0.070 0.930 25 H 0.095 0.905 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.424 0.576 36 H 0.177 0.823 37 H 0.134 0.866 38 H 0.386 0.614 39 H -0.266 1.266 40 H -0.276 1.276 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.103 -1.627 -2.239 4.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.432 6.432 6 C -0.095 4.095 7 H 0.143 0.857 8 C -0.137 4.137 9 C -0.143 4.143 10 C -0.112 4.112 11 H 0.104 0.896 12 C 0.020 3.980 13 N -0.324 5.324 14 C -0.055 4.055 15 N -0.307 5.307 16 C -0.047 4.047 17 C -0.430 4.430 18 C -0.135 4.135 19 O -0.351 6.351 20 Si 0.626 3.374 21 S 0.361 5.639 22 C -0.146 4.146 23 C -0.142 4.142 24 H 0.089 0.911 25 H 0.114 0.886 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.264 0.736 36 H 0.194 0.806 37 H 0.151 0.849 38 H 0.235 0.765 39 H -0.191 1.191 40 H -0.202 1.202 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.272 -1.918 -3.012 4.843 hybrid contribution -0.203 0.358 1.406 1.465 sum -3.475 -1.560 -1.605 4.133 Atomic orbital electron populations 1.21821 0.90660 1.04236 1.03758 1.23229 0.96938 0.79504 1.02337 1.86517 1.24393 1.33305 1.83491 1.24443 0.80481 0.93476 0.70918 1.90667 1.61153 1.44575 1.46842 1.21268 0.96659 0.88079 1.03516 0.85723 1.21383 0.91499 0.97808 1.03018 1.21455 1.01155 0.93826 0.97823 1.21397 0.95963 0.93804 1.00019 0.89611 1.21380 0.99735 0.91933 0.84997 1.44128 1.57903 1.08416 1.21987 1.23966 0.95425 0.92143 0.94001 1.66487 1.21912 1.07816 1.34464 1.21436 0.98318 0.90821 0.94118 1.25609 1.13556 1.02140 1.01740 1.24269 1.05177 0.81812 1.02224 1.86587 1.29110 1.47797 1.71589 0.94407 0.80021 0.86052 0.76909 1.83823 1.54549 1.06787 1.18705 1.21587 0.93833 0.95547 1.03620 1.21496 1.01710 0.95886 0.95145 0.91137 0.88644 0.91283 0.91505 0.91634 0.91817 0.91702 0.90518 0.90418 0.91981 0.92214 0.73644 0.80610 0.84854 0.76458 1.19142 1.20152 0.90754 0.90296 0.91437 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.57 10.29 71.98 0.74 1.31 16 2 C 0.05 0.05 6.19 71.98 0.45 0.50 16 3 O -0.36 -1.12 10.12 -51.41 -0.52 -1.64 16 4 C 0.46 1.89 7.25 71.24 0.52 2.40 16 5 O -0.54 -5.87 15.73 21.97 0.35 -5.52 16 6 C -0.08 0.21 2.63 -11.54 -0.03 0.18 16 7 H 0.12 -0.70 8.14 -2.39 -0.02 -0.72 16 8 C -0.10 0.24 4.49 30.59 0.14 0.38 16 9 C -0.10 0.63 5.20 30.59 0.16 0.79 16 10 C -0.09 0.68 2.23 -10.79 -0.02 0.66 16 11 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 12 C 0.15 -0.58 5.34 86.38 0.46 -0.12 16 13 N -0.68 2.37 5.44 -351.00 -1.91 0.46 16 14 C 0.32 0.54 8.09 179.32 1.45 1.99 16 15 N -0.58 -3.48 10.14 -202.03 -2.05 -5.53 16 16 C 0.10 0.44 11.22 83.54 0.94 1.37 16 17 C -0.31 -0.39 5.74 24.57 0.14 -0.25 16 18 C -0.02 0.01 2.98 71.24 0.21 0.22 16 19 O -0.54 -1.27 12.87 -148.98 -1.92 -3.19 16 20 Si 0.72 -1.05 31.06 68.60 2.13 1.08 16 21 S 0.11 -0.10 20.57 -56.49 -1.16 -1.27 16 22 C -0.11 0.89 5.07 30.59 0.16 1.05 16 23 C -0.10 0.62 5.13 30.59 0.16 0.77 16 24 H 0.07 -0.29 8.14 -2.38 -0.02 -0.31 16 25 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 26 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 27 H 0.07 0.10 8.13 -2.39 -0.02 0.08 16 28 H 0.07 0.11 8.13 -2.39 -0.02 0.09 16 29 H 0.06 -0.01 8.10 -2.39 -0.02 -0.02 16 30 H 0.06 0.00 8.10 -2.39 -0.02 -0.02 16 31 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 32 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 33 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 34 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 35 H 0.42 -3.41 7.78 -92.71 -0.72 -4.13 16 36 H 0.18 0.45 8.06 -2.91 -0.02 0.43 16 37 H 0.13 -0.32 7.96 -2.38 -0.02 -0.34 16 38 H 0.39 -1.10 8.70 -74.06 -0.64 -1.75 16 39 H -0.27 -0.58 7.11 99.48 0.71 0.13 16 40 H -0.28 -1.33 7.11 99.48 0.71 -0.62 16 41 H 0.07 -0.58 8.14 -2.39 -0.02 -0.60 16 42 H 0.08 -0.76 7.18 -2.39 -0.02 -0.78 16 43 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 44 H 0.08 -0.48 8.11 -2.39 -0.02 -0.50 16 Total: 0.00 -16.65 371.84 0.06 -16.60 By element: Atomic # 1 Polarization: -11.92 SS G_CDS: -0.32 Total: -12.24 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 5.46 Total: 11.25 kcal Atomic # 7 Polarization: -1.11 SS G_CDS: -3.96 Total: -5.07 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -2.09 Total: -10.35 kcal Atomic # 14 Polarization: -1.05 SS G_CDS: 2.13 Total: 1.08 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -1.16 Total: -1.27 kcal Total: -16.65 0.06 -16.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14654748_15704118.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.015 kcal (2) G-P(sol) polarization free energy of solvation -16.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds