Wall clock time and date at job start Mon Mar 8 2021 07:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45203 * 109.46814 * 2 1 4 4 C 1.34234 * 116.99711 * 179.97438 * 3 2 1 5 5 O 1.20820 * 120.00004 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99698 * 180.02562 * 4 3 2 7 7 H 1.09005 * 109.46786 * 60.00392 * 6 4 3 8 8 C 1.52998 * 109.46669 * 180.02562 * 6 4 3 9 9 C 1.53006 * 109.46939 * 180.02562 * 8 6 4 10 10 C 1.52998 * 109.46845 * 300.00164 * 9 8 6 11 11 H 1.08997 * 109.47053 * 299.99572 * 10 9 8 12 12 C 1.53006 * 109.46845 * 180.02562 * 10 9 8 13 13 N 1.46502 * 109.47049 * 174.99860 * 12 10 9 14 14 C 1.38607 * 119.99867 * 179.97438 * 13 12 10 15 15 N 1.29689 * 124.94798 * 180.30553 * 14 13 12 16 16 C 1.32123 * 116.86361 * 180.20674 * 15 14 13 17 17 C 1.50700 * 122.70942 * 179.79518 * 16 15 14 18 18 O 1.42899 * 109.47068 * 293.24883 * 17 16 15 19 19 Si 1.86303 * 109.47079 * 53.24679 * 17 16 15 20 20 C 1.33332 * 114.58068 * 359.52549 * 16 15 14 21 21 C 1.50695 * 125.95096 * 180.26491 * 20 16 15 22 22 S 1.70967 * 124.94866 * 0.02562 * 14 13 12 23 23 C 1.52998 * 109.47486 * 60.00171 * 10 9 8 24 24 C 1.52998 * 109.47116 * 300.00344 * 6 4 3 25 25 H 1.08993 * 109.46789 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46838 * 300.00101 * 1 2 3 27 27 H 1.08995 * 109.47008 * 59.99767 * 1 2 3 28 28 H 1.09001 * 109.47000 * 240.00604 * 2 1 3 29 29 H 1.08995 * 109.47008 * 120.00233 * 2 1 3 30 30 H 1.08997 * 109.47464 * 60.00286 * 8 6 4 31 31 H 1.09004 * 109.47154 * 299.99934 * 8 6 4 32 32 H 1.09004 * 109.47144 * 180.02562 * 9 8 6 33 33 H 1.09005 * 109.46787 * 60.00047 * 9 8 6 34 34 H 1.08997 * 109.47231 * 54.99969 * 12 10 9 35 35 H 1.08997 * 109.46783 * 295.00090 * 12 10 9 36 36 H 0.97001 * 119.99712 * 0.02562 * 13 12 10 37 37 H 1.08996 * 109.47046 * 173.24834 * 17 16 15 38 38 H 0.96698 * 114.00371 * 59.99882 * 18 17 16 39 39 H 1.48501 * 109.99731 * 58.67990 * 19 17 16 40 40 H 1.48494 * 109.99883 * 179.97438 * 19 17 16 41 41 H 1.08998 * 109.46870 * 84.87030 * 21 20 16 42 42 H 1.08997 * 109.46886 * 204.86739 * 21 20 16 43 43 H 1.08999 * 109.47351 * 324.86983 * 21 20 16 44 44 H 1.09001 * 109.46903 * 59.99191 * 23 10 9 45 45 H 1.08996 * 109.47336 * 179.97438 * 23 10 9 46 46 H 1.08997 * 109.47053 * 299.99737 * 24 6 4 47 47 H 1.08995 * 109.47251 * 59.99997 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9376 0.0012 7 1 3.5844 3.4694 0.8913 8 6 5.4486 2.8574 0.0010 9 6 6.0334 4.2713 0.0023 10 6 5.5617 5.0194 -1.2462 11 1 5.8977 4.4881 -2.1367 12 6 6.1471 6.4330 -1.2453 13 7 5.7942 7.1085 -2.4965 14 6 6.2161 8.4089 -2.7249 15 7 5.9551 9.0980 -3.7921 16 6 6.4420 10.3251 -3.8443 17 6 6.2231 11.2386 -5.0227 18 8 6.9045 10.7150 -6.1644 19 14 4.3998 11.3556 -5.3875 20 6 7.1379 10.6920 -2.7678 21 6 7.7980 12.0298 -2.5547 22 16 7.1508 9.3405 -1.6379 23 6 4.0339 5.0995 -1.2461 24 6 3.4495 3.6849 -1.2480 25 1 -0.3632 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.7845 2.3258 -0.8892 31 1 5.7846 2.3249 0.8908 32 1 7.1219 4.2143 0.0018 33 1 5.6974 4.8026 0.8929 34 1 7.2319 6.3771 -1.1560 35 1 5.7417 6.9935 -0.4029 36 1 5.2647 6.6459 -3.1647 37 1 6.6116 12.2302 -4.7909 38 1 6.6092 9.8329 -6.4285 39 1 3.6757 11.8689 -4.1970 40 1 4.1706 12.2541 -6.5473 41 1 7.0700 12.7341 -2.1521 42 1 8.6239 11.9195 -1.8520 43 1 8.1775 12.4034 -3.5058 44 1 3.6980 5.6307 -0.3556 45 1 3.6979 5.6328 -2.1353 46 1 3.7858 3.1531 -2.1380 47 1 2.3610 3.7419 -1.2483 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14654748_15704122.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:14:58 Heat of formation + Delta-G solvation = -87.641583 kcal Electronic energy + Delta-G solvation = -27163.222948 eV Core-core repulsion = 23245.661380 eV Total energy + Delta-G solvation = -3917.561568 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.82388 -41.02247 -39.80947 -37.94306 -37.59231 -36.60407 -33.81944 -32.82149 -32.02370 -31.70093 -29.13049 -27.37249 -25.68851 -24.73402 -24.24387 -23.61013 -23.16853 -21.70673 -20.88798 -20.33598 -19.07312 -18.72663 -17.94197 -17.67654 -17.65409 -17.36507 -16.59282 -16.30205 -15.90858 -15.70431 -15.39307 -15.24767 -15.02318 -14.87134 -14.67567 -14.24195 -14.22605 -14.06699 -13.82712 -13.64344 -13.62126 -13.42924 -13.25997 -13.05609 -12.93387 -12.77987 -12.56706 -12.47510 -12.24863 -12.09926 -11.97427 -11.80149 -11.58636 -11.44554 -11.20547 -11.15680 -10.94152 -10.66146 -10.45198 -9.99466 -8.61118 -4.92184 -0.01801 0.18351 0.74478 1.10460 1.26903 1.62918 1.64784 1.81881 1.98762 1.99053 3.41597 3.42410 3.58855 3.65831 3.68550 3.82527 3.94677 3.97138 4.01811 4.02877 4.15420 4.19053 4.26720 4.31204 4.38796 4.43320 4.44177 4.50939 4.59545 4.63743 4.67724 4.79958 4.83865 4.87753 4.91228 4.92468 4.95200 5.08469 5.11654 5.13215 5.18555 5.21419 5.23408 5.34204 5.43546 5.48750 5.66728 6.38410 6.64596 6.66288 6.93036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.361 6.361 4 C 0.461 3.539 5 O -0.543 6.543 6 C -0.076 4.076 7 H 0.127 0.873 8 C -0.101 4.101 9 C -0.105 4.105 10 C -0.090 4.090 11 H 0.083 0.917 12 C 0.124 3.876 13 N -0.683 5.683 14 C 0.312 3.688 15 N -0.558 5.558 16 C 0.062 3.938 17 C -0.037 4.037 18 O -0.550 6.550 19 Si 0.778 3.222 20 C -0.271 4.271 21 C -0.073 4.073 22 S 0.119 5.881 23 C -0.109 4.109 24 C -0.105 4.105 25 H 0.095 0.905 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.418 0.582 37 H 0.121 0.879 38 H 0.393 0.607 39 H -0.296 1.296 40 H -0.282 1.282 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.064 0.936 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.342 -1.413 3.017 4.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.306 3.694 5 O -0.433 6.433 6 C -0.095 4.095 7 H 0.145 0.855 8 C -0.138 4.138 9 C -0.143 4.143 10 C -0.109 4.109 11 H 0.102 0.898 12 C 0.001 3.999 13 N -0.324 5.324 14 C -0.060 4.060 15 N -0.286 5.286 16 C -0.069 4.069 17 C -0.150 4.150 18 O -0.357 6.357 19 Si 0.683 3.317 20 C -0.394 4.394 21 C -0.132 4.132 22 S 0.367 5.633 23 C -0.147 4.147 24 C -0.143 4.143 25 H 0.113 0.887 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.257 0.743 37 H 0.138 0.862 38 H 0.243 0.757 39 H -0.223 1.223 40 H -0.209 1.209 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.391 -1.203 3.759 4.615 hybrid contribution 0.228 -0.048 -0.604 0.647 sum -2.163 -1.251 3.155 4.024 Atomic orbital electron populations 1.21819 0.90685 1.04218 1.03764 1.23225 0.96926 0.79528 1.02309 1.86521 1.24451 1.33266 1.83492 1.24491 0.80464 0.93564 0.70900 1.90666 1.61152 1.44616 1.46861 1.21278 0.96727 0.87966 1.03491 0.85480 1.21394 0.91432 0.98031 1.02981 1.21483 1.01350 0.93686 0.97756 1.21325 0.95940 0.93420 1.00188 0.89836 1.21731 1.00530 0.93137 0.84533 1.44075 1.58190 1.08102 1.22028 1.23521 0.96902 0.92319 0.93214 1.65968 1.30883 1.07140 1.24574 1.20189 0.97773 0.91632 0.97307 1.24826 1.10752 0.96383 0.83072 1.86432 1.65459 1.38723 1.45049 0.92958 0.73678 0.87214 0.77865 1.25407 1.12270 1.03063 0.98667 1.20235 0.99966 0.89693 1.03305 1.83803 1.52499 1.05826 1.21138 1.21606 0.93853 0.95451 1.03760 1.21499 1.01698 0.95989 0.95118 0.88678 0.91228 0.91185 0.91589 0.91592 0.92050 0.91590 0.90122 0.89826 0.90918 0.90488 0.74296 0.86158 0.75748 1.22285 1.20896 0.90276 0.90484 0.90237 0.90289 0.90523 0.91749 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.58 10.29 71.98 0.74 1.32 16 2 C 0.05 0.04 6.19 71.98 0.45 0.49 16 3 O -0.36 -1.00 10.12 -51.45 -0.52 -1.52 16 4 C 0.46 1.63 7.26 71.24 0.52 2.15 16 5 O -0.54 -5.61 15.73 21.98 0.35 -5.27 16 6 C -0.08 0.29 2.63 -11.54 -0.03 0.26 16 7 H 0.13 -0.90 8.14 -2.38 -0.02 -0.92 16 8 C -0.10 0.39 4.49 30.60 0.14 0.53 16 9 C -0.10 0.92 5.20 30.60 0.16 1.08 16 10 C -0.09 0.85 2.22 -10.79 -0.02 0.82 16 11 H 0.08 -0.71 8.14 -2.39 -0.02 -0.73 16 12 C 0.12 -1.00 4.92 86.38 0.43 -0.57 16 13 N -0.68 2.93 5.44 -351.00 -1.91 1.02 16 14 C 0.31 0.48 8.24 179.32 1.48 1.95 16 15 N -0.56 -2.43 9.76 -189.86 -1.85 -4.28 16 16 C 0.06 0.32 5.20 41.41 0.22 0.53 16 17 C -0.04 -0.14 2.84 71.24 0.20 0.06 16 18 O -0.55 -2.60 12.88 -148.98 -1.92 -4.52 16 19 Si 0.78 2.16 32.61 68.60 2.24 4.40 16 20 C -0.27 -1.09 6.57 24.57 0.16 -0.93 16 21 C -0.07 0.00 9.71 71.23 0.69 0.69 16 22 S 0.12 0.11 22.32 -56.49 -1.26 -1.15 16 23 C -0.11 1.02 5.08 30.61 0.16 1.17 16 24 C -0.11 0.67 5.14 30.61 0.16 0.83 16 25 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 26 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 27 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 28 H 0.07 0.09 8.13 -2.39 -0.02 0.07 16 29 H 0.07 0.09 8.13 -2.39 -0.02 0.08 16 30 H 0.06 -0.06 8.10 -2.39 -0.02 -0.08 16 31 H 0.07 -0.10 8.10 -2.38 -0.02 -0.12 16 32 H 0.08 -0.74 8.14 -2.38 -0.02 -0.76 16 33 H 0.08 -0.88 8.14 -2.38 -0.02 -0.90 16 34 H 0.07 -0.57 8.14 -2.39 -0.02 -0.59 16 35 H 0.08 -0.67 8.14 -2.39 -0.02 -0.69 16 36 H 0.42 -2.51 7.78 -92.71 -0.72 -3.23 16 37 H 0.12 0.31 6.33 -2.39 -0.02 0.29 16 38 H 0.39 -0.37 8.70 -74.06 -0.64 -1.02 16 39 H -0.30 -2.51 7.11 99.48 0.71 -1.80 16 40 H -0.28 -2.11 7.11 99.48 0.71 -1.40 16 41 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 42 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 43 H 0.08 -0.02 7.17 -2.39 -0.02 -0.04 16 44 H 0.08 -0.78 8.14 -2.39 -0.02 -0.80 16 45 H 0.08 -0.72 7.18 -2.39 -0.02 -0.74 16 46 H 0.06 -0.31 8.14 -2.39 -0.02 -0.33 16 47 H 0.08 -0.48 8.11 -2.39 -0.02 -0.50 16 Total: 0.00 -16.87 392.64 0.20 -16.67 By element: Atomic # 1 Polarization: -15.40 SS G_CDS: -0.35 Total: -15.75 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 5.43 Total: 10.39 kcal Atomic # 7 Polarization: 0.50 SS G_CDS: -3.76 Total: -3.26 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -2.09 Total: -11.30 kcal Atomic # 14 Polarization: 2.16 SS G_CDS: 2.24 Total: 4.40 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -1.26 Total: -1.15 kcal Total: -16.87 0.20 -16.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14654748_15704122.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.972 kcal (2) G-P(sol) polarization free energy of solvation -16.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds