Wall clock time and date at job start Mon Mar 8 2021 07:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50694 * 109.47118 * 120.00721 * 2 1 3 5 5 C 1.38608 * 120.71591 * 244.71458 * 4 2 1 6 6 N 1.32280 * 119.19415 * 179.79062 * 5 4 2 7 7 C 1.32494 * 120.74121 * 0.47425 * 6 5 4 8 8 N 1.38402 * 119.21736 * 179.75402 * 7 6 5 9 9 C 1.46504 * 120.00017 * 0.02835 * 8 7 6 10 10 H 1.08992 * 112.84608 * 336.19073 * 9 8 7 11 11 C 1.53780 * 113.61680 * 107.50019 * 9 8 7 12 12 C 1.53777 * 87.08098 * 139.97927 * 11 9 8 13 13 H 1.08999 * 113.69159 * 89.12546 * 12 11 9 14 14 C 1.53002 * 113.61620 * 220.01926 * 12 11 9 15 15 N 1.46499 * 109.46886 * 272.50019 * 14 12 11 16 16 C 1.34946 * 126.03917 * 124.71593 * 15 14 12 17 17 C 1.35322 * 107.74596 * 179.83384 * 16 15 14 18 18 C 1.39872 * 107.91735 * 0.42581 * 17 16 15 19 19 N 1.30830 * 108.20246 * 359.73388 * 18 17 16 20 20 C 1.53777 * 113.61064 * 204.99836 * 9 8 7 21 21 N 1.32498 * 121.56274 * 359.77854 * 7 6 5 22 22 C 1.32267 * 120.74164 * 359.97438 * 21 7 6 23 23 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 24 24 H 1.09004 * 109.46690 * 240.00803 * 2 1 3 25 25 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 26 26 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 27 27 H 1.08001 * 120.40245 * 0.02562 * 5 4 2 28 28 H 0.97002 * 120.00013 * 180.02562 * 8 7 6 29 29 H 1.08999 * 113.61504 * 254.52621 * 11 9 8 30 30 H 1.09000 * 113.61416 * 25.43046 * 11 9 8 31 31 H 1.09006 * 109.47018 * 32.49605 * 14 12 11 32 32 H 1.08997 * 109.47260 * 152.49931 * 14 12 11 33 33 H 1.07997 * 126.12844 * 359.97438 * 16 15 14 34 34 H 1.07998 * 126.03853 * 180.15864 * 17 16 15 35 35 H 1.08003 * 125.89341 * 179.71746 * 18 17 16 36 36 H 1.09002 * 113.62123 * 334.56165 * 20 9 8 37 37 H 1.09004 * 113.61617 * 105.47012 * 20 9 8 38 38 H 1.08001 * 120.40333 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 1.2303 5 6 2.6472 -0.0265 2.2003 6 7 3.0702 -0.6790 3.2703 7 6 2.8246 -1.9729 3.4156 8 7 3.2865 -2.6255 4.5453 9 6 4.0366 -1.8858 5.5634 10 1 4.5172 -0.9910 5.1681 11 6 3.2421 -1.6402 6.8569 12 6 4.5436 -1.9380 7.6198 13 1 5.1635 -1.0574 7.7888 14 6 4.3348 -2.7696 8.8870 15 7 4.0444 -1.8789 10.0133 16 6 2.9640 -1.9444 10.8192 17 6 3.0703 -0.9521 11.7331 18 6 4.2515 -0.2503 11.4708 19 7 4.8361 -0.8050 10.4402 20 6 4.9752 -2.7704 6.4009 21 7 2.1478 -2.6569 2.5047 22 6 1.6926 -2.0634 1.4138 23 1 -0.3934 0.4418 -0.7650 24 1 1.7923 -0.5137 -0.8901 25 1 1.5616 2.4678 1.2086 26 1 3.5346 1.7703 -0.0322 27 1 2.8538 1.0274 2.0856 28 1 3.1134 -3.5727 4.6631 29 1 2.8960 -0.6127 6.9684 30 1 2.4555 -2.3742 7.0323 31 1 3.4987 -3.4531 8.7393 32 1 5.2383 -3.3412 9.0995 33 1 2.1598 -2.6618 10.7489 34 1 2.3654 -0.7371 12.5225 35 1 4.6174 0.6024 12.0235 36 1 4.6625 -3.8133 6.4516 37 1 6.0283 -2.6551 6.1442 38 1 1.1419 -2.6264 0.6747 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14687798_12175864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:38:04 Heat of formation + Delta-G solvation = 143.475433 kcal Electronic energy + Delta-G solvation = -21704.187270 eV Core-core repulsion = 18358.742668 eV Total energy + Delta-G solvation = -3345.444602 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.16489 -41.97758 -40.38974 -37.99248 -36.02232 -34.72809 -33.91362 -32.17636 -30.93452 -28.59184 -26.93057 -26.58531 -25.93553 -24.00937 -22.86064 -22.03467 -21.53825 -20.71606 -19.34289 -18.81709 -18.42226 -18.12737 -16.77254 -16.70187 -16.39965 -16.15173 -15.89656 -15.72641 -15.23207 -15.06952 -14.77398 -14.53042 -14.32804 -14.03379 -13.73266 -13.65652 -13.43266 -13.22705 -13.06806 -12.39662 -12.21526 -12.01779 -11.85727 -11.80440 -11.61766 -11.47811 -11.20751 -10.60294 -10.27111 -9.97731 -9.45224 -9.11853 -5.07724 0.03183 0.14380 1.03003 1.19513 1.56374 1.58567 1.79141 1.87427 2.01816 2.75383 3.06984 3.27134 3.34592 3.36929 3.41983 3.55399 3.64864 3.74007 3.85226 3.86876 3.96316 4.04209 4.09799 4.24987 4.36540 4.44194 4.48681 4.57425 4.60935 4.70540 4.74850 4.88186 4.90855 4.93740 5.08981 5.16824 5.32699 5.76000 5.79353 5.97230 6.12002 6.37307 6.56495 6.84128 7.26684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.050 4.050 3 Si 0.680 3.320 4 C -0.248 4.248 5 C 0.194 3.806 6 N -0.561 5.561 7 C 0.567 3.433 8 N -0.684 5.684 9 C 0.141 3.859 10 H 0.121 0.879 11 C -0.147 4.147 12 C -0.119 4.119 13 H 0.110 0.890 14 C 0.146 3.854 15 N -0.371 5.371 16 C 0.052 3.948 17 C -0.275 4.275 18 C 0.044 3.956 19 N -0.295 5.295 20 C -0.138 4.138 21 N -0.568 5.568 22 C 0.227 3.773 23 H 0.384 0.616 24 H 0.076 0.924 25 H -0.249 1.249 26 H -0.252 1.252 27 H 0.158 0.842 28 H 0.415 0.585 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.172 0.828 34 H 0.147 0.853 35 H 0.183 0.817 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.520 -0.489 -3.477 3.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.162 4.162 3 Si 0.581 3.419 4 C -0.256 4.256 5 C 0.027 3.973 6 N -0.283 5.283 7 C 0.211 3.789 8 N -0.319 5.319 9 C 0.035 3.965 10 H 0.139 0.861 11 C -0.187 4.187 12 C -0.139 4.139 13 H 0.128 0.872 14 C 0.024 3.976 15 N -0.153 5.153 16 C -0.094 4.094 17 C -0.305 4.305 18 C -0.142 4.142 19 N -0.117 5.117 20 C -0.177 4.177 21 N -0.289 5.289 22 C 0.058 3.942 23 H 0.232 0.768 24 H 0.094 0.906 25 H -0.173 1.173 26 H -0.177 1.177 27 H 0.174 0.826 28 H 0.253 0.747 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.189 0.811 34 H 0.165 0.835 35 H 0.200 0.800 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.547 -0.671 -2.412 2.562 hybrid contribution -1.179 -0.499 0.073 1.283 sum -0.632 -1.170 -2.338 2.690 Atomic orbital electron populations 1.86495 1.17267 1.81817 1.49845 1.24300 0.85625 1.09981 0.96336 0.95069 0.80959 0.78123 0.87730 1.20722 1.07854 0.97067 0.99941 1.22621 0.89100 0.98874 0.86719 1.67883 1.27324 1.08469 1.24628 1.19416 0.87070 0.85493 0.86946 1.44185 1.58120 1.11857 1.17766 1.22502 0.92323 0.96289 0.85375 0.86093 1.23610 0.96724 1.03016 0.95316 1.22684 0.98946 1.00153 0.92083 0.87155 1.21736 1.03001 0.90138 0.82698 1.48707 1.16886 1.24767 1.24941 1.22586 0.92623 1.00953 0.93249 1.21559 1.02170 1.01124 1.05611 1.23928 0.94653 1.00202 0.95412 1.77331 1.18307 1.00518 1.15538 1.23411 1.00723 0.99293 0.94284 1.68000 1.16559 1.39965 1.04396 1.22832 0.88849 0.90859 0.91634 0.76837 0.90586 1.17325 1.17708 0.82555 0.74710 0.90778 0.89638 0.88543 0.89396 0.81111 0.83539 0.80037 0.89064 0.89820 0.81034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.39 12.82 -35.23 -0.45 -0.06 16 2 C -0.05 0.05 2.82 36.00 0.10 0.15 16 3 Si 0.68 -1.22 29.91 -169.99 -5.08 -6.30 16 4 C -0.25 -0.53 5.40 -104.35 -0.56 -1.09 16 5 C 0.19 0.64 9.92 -17.22 -0.17 0.47 16 6 N -0.56 -2.49 9.13 -13.93 -0.13 -2.61 16 7 C 0.57 2.19 8.43 -322.81 -2.72 -0.53 16 8 N -0.68 -0.74 5.50 -55.01 -0.30 -1.04 16 9 C 0.14 0.00 4.25 -67.12 -0.29 -0.29 16 10 H 0.12 0.19 7.37 -51.93 -0.38 -0.20 16 11 C -0.15 0.04 7.43 -25.92 -0.19 -0.16 16 12 C -0.12 0.12 3.87 -89.81 -0.35 -0.23 16 13 H 0.11 0.11 7.96 -51.93 -0.41 -0.31 16 14 C 0.15 -0.18 6.35 -4.04 -0.03 -0.20 16 15 N -0.37 -0.64 3.68 -61.36 -0.23 -0.86 16 16 C 0.05 0.04 11.45 -17.22 -0.20 -0.16 16 17 C -0.28 -0.41 10.80 -40.01 -0.43 -0.84 16 18 C 0.04 0.11 12.03 -17.37 -0.21 -0.10 16 19 N -0.30 -1.17 12.27 30.62 0.38 -0.79 16 20 C -0.14 0.30 7.39 -25.92 -0.19 0.10 16 21 N -0.57 -2.22 10.46 -13.93 -0.15 -2.37 16 22 C 0.23 0.55 10.99 -17.23 -0.19 0.36 16 23 H 0.38 -2.20 8.74 45.56 0.40 -1.80 16 24 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 25 H -0.25 -0.35 7.07 56.52 0.40 0.05 16 26 H -0.25 -0.17 7.11 56.52 0.40 0.23 16 27 H 0.16 0.32 5.04 -52.49 -0.26 0.05 16 28 H 0.41 -0.21 8.84 -40.82 -0.36 -0.57 16 29 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.09 -0.07 7.90 -51.93 -0.41 -0.48 16 31 H 0.10 -0.33 7.77 -51.93 -0.40 -0.73 16 32 H 0.09 -0.15 8.14 -51.93 -0.42 -0.57 16 33 H 0.17 -0.41 8.06 -52.49 -0.42 -0.83 16 34 H 0.15 -0.05 8.06 -52.49 -0.42 -0.47 16 35 H 0.18 -0.04 8.06 -52.48 -0.42 -0.46 16 36 H 0.09 -0.32 8.08 -51.93 -0.42 -0.74 16 37 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 38 H 0.17 -0.02 8.06 -52.49 -0.42 -0.45 16 LS Contribution 325.38 15.07 4.90 4.90 Total: 0.00 -9.16 325.38 -11.31 -20.47 By element: Atomic # 1 Polarization: -3.99 SS G_CDS: -4.83 Total: -8.81 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -5.42 Total: -2.51 kcal Atomic # 7 Polarization: -7.25 SS G_CDS: -0.43 Total: -7.68 kcal Atomic # 8 Polarization: 0.39 SS G_CDS: -0.45 Total: -0.06 kcal Atomic # 14 Polarization: -1.22 SS G_CDS: -5.08 Total: -6.30 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -9.16 -11.31 -20.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687798_12175864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.942 kcal (2) G-P(sol) polarization free energy of solvation -9.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds