Wall clock time and date at job start Mon Mar 8 2021 07:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50694 * 109.47118 * 120.00721 * 2 1 3 5 5 C 1.38608 * 120.71591 * 244.71458 * 4 2 1 6 6 N 1.32280 * 119.19415 * 179.79062 * 5 4 2 7 7 C 1.32494 * 120.74121 * 0.47425 * 6 5 4 8 8 N 1.38402 * 119.21736 * 179.75402 * 7 6 5 9 9 C 1.46504 * 120.00017 * 0.02835 * 8 7 6 10 10 H 1.08992 * 112.84608 * 336.19073 * 9 8 7 11 11 C 1.53780 * 113.61680 * 107.50019 * 9 8 7 12 12 C 1.53777 * 87.08098 * 139.97927 * 11 9 8 13 13 H 1.08999 * 113.69159 * 89.12546 * 12 11 9 14 14 C 1.53002 * 113.61620 * 220.01926 * 12 11 9 15 15 N 1.46499 * 109.46886 * 272.50019 * 14 12 11 16 16 C 1.34946 * 126.03917 * 124.71593 * 15 14 12 17 17 C 1.35322 * 107.74596 * 179.83384 * 16 15 14 18 18 C 1.39872 * 107.91735 * 0.42581 * 17 16 15 19 19 N 1.30830 * 108.20246 * 359.73388 * 18 17 16 20 20 C 1.53777 * 113.61064 * 204.99836 * 9 8 7 21 21 N 1.32498 * 121.56274 * 359.77854 * 7 6 5 22 22 C 1.32267 * 120.74164 * 359.97438 * 21 7 6 23 23 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 24 24 H 1.09004 * 109.46690 * 240.00803 * 2 1 3 25 25 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 26 26 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 27 27 H 1.08001 * 120.40245 * 0.02562 * 5 4 2 28 28 H 0.97002 * 120.00013 * 180.02562 * 8 7 6 29 29 H 1.08999 * 113.61504 * 254.52621 * 11 9 8 30 30 H 1.09000 * 113.61416 * 25.43046 * 11 9 8 31 31 H 1.09006 * 109.47018 * 32.49605 * 14 12 11 32 32 H 1.08997 * 109.47260 * 152.49931 * 14 12 11 33 33 H 1.07997 * 126.12844 * 359.97438 * 16 15 14 34 34 H 1.07998 * 126.03853 * 180.15864 * 17 16 15 35 35 H 1.08003 * 125.89341 * 179.71746 * 18 17 16 36 36 H 1.09002 * 113.62123 * 334.56165 * 20 9 8 37 37 H 1.09004 * 113.61617 * 105.47012 * 20 9 8 38 38 H 1.08001 * 120.40333 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 1.2303 5 6 2.6472 -0.0265 2.2003 6 7 3.0702 -0.6790 3.2703 7 6 2.8246 -1.9729 3.4156 8 7 3.2865 -2.6255 4.5453 9 6 4.0366 -1.8858 5.5634 10 1 4.5172 -0.9910 5.1681 11 6 3.2421 -1.6402 6.8569 12 6 4.5436 -1.9380 7.6198 13 1 5.1635 -1.0574 7.7888 14 6 4.3348 -2.7696 8.8870 15 7 4.0444 -1.8789 10.0133 16 6 2.9640 -1.9444 10.8192 17 6 3.0703 -0.9521 11.7331 18 6 4.2515 -0.2503 11.4708 19 7 4.8361 -0.8050 10.4402 20 6 4.9752 -2.7704 6.4009 21 7 2.1478 -2.6569 2.5047 22 6 1.6926 -2.0634 1.4138 23 1 -0.3934 0.4418 -0.7650 24 1 1.7923 -0.5137 -0.8901 25 1 1.5616 2.4678 1.2086 26 1 3.5346 1.7703 -0.0322 27 1 2.8538 1.0274 2.0856 28 1 3.1134 -3.5727 4.6631 29 1 2.8960 -0.6127 6.9684 30 1 2.4555 -2.3742 7.0323 31 1 3.4987 -3.4531 8.7393 32 1 5.2383 -3.3412 9.0995 33 1 2.1598 -2.6618 10.7489 34 1 2.3654 -0.7371 12.5225 35 1 4.6174 0.6024 12.0235 36 1 4.6625 -3.8133 6.4516 37 1 6.0283 -2.6551 6.1442 38 1 1.1419 -2.6264 0.6747 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14687798_12175864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:38:03 Heat of formation + Delta-G solvation = 144.371283 kcal Electronic energy + Delta-G solvation = -21704.148423 eV Core-core repulsion = 18358.742668 eV Total energy + Delta-G solvation = -3345.405755 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.29938 -42.05479 -40.39711 -37.92415 -36.07078 -34.92698 -33.94977 -32.25969 -31.00400 -28.60616 -26.90214 -26.59304 -26.11035 -24.04419 -22.96148 -22.07843 -21.59016 -20.72584 -19.44983 -18.92394 -18.33316 -18.15016 -16.80711 -16.72180 -16.46825 -16.23574 -15.94786 -15.83088 -15.22422 -15.11892 -14.85679 -14.54623 -14.36030 -14.07368 -13.71851 -13.57769 -13.43260 -13.23456 -13.04573 -12.44878 -12.27986 -12.06661 -11.99264 -11.87755 -11.64073 -11.54887 -11.25635 -10.62401 -10.36538 -10.05959 -9.51738 -9.22529 -4.97821 -0.16052 -0.02986 0.96890 1.29389 1.60772 1.63626 1.71729 1.92436 1.94908 2.59155 2.91226 3.31473 3.39453 3.42196 3.43345 3.45790 3.62411 3.71587 3.85006 3.88240 4.04803 4.06818 4.14009 4.28393 4.45209 4.50422 4.53312 4.59702 4.62296 4.67949 4.73878 4.87045 4.90592 4.96338 5.04318 5.12896 5.29732 5.62726 5.72374 5.86745 6.14975 6.27861 6.75018 6.95233 7.10833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.052 4.052 3 Si 0.769 3.231 4 C -0.253 4.253 5 C 0.174 3.826 6 N -0.584 5.584 7 C 0.550 3.450 8 N -0.675 5.675 9 C 0.136 3.864 10 H 0.099 0.901 11 C -0.141 4.141 12 C -0.111 4.111 13 H 0.085 0.915 14 C 0.140 3.860 15 N -0.375 5.375 16 C 0.052 3.948 17 C -0.293 4.293 18 C 0.029 3.971 19 N -0.337 5.337 20 C -0.119 4.119 21 N -0.581 5.581 22 C 0.220 3.780 23 H 0.406 0.594 24 H 0.105 0.895 25 H -0.298 1.298 26 H -0.288 1.288 27 H 0.159 0.841 28 H 0.423 0.577 29 H 0.048 0.952 30 H 0.098 0.902 31 H 0.126 0.874 32 H 0.094 0.906 33 H 0.205 0.795 34 H 0.161 0.839 35 H 0.196 0.804 36 H 0.116 0.884 37 H 0.085 0.915 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.443 -2.021 -4.265 5.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.163 4.163 3 Si 0.676 3.324 4 C -0.261 4.261 5 C 0.007 3.993 6 N -0.307 5.307 7 C 0.194 3.806 8 N -0.311 5.311 9 C 0.031 3.969 10 H 0.117 0.883 11 C -0.180 4.180 12 C -0.131 4.131 13 H 0.103 0.897 14 C 0.020 3.980 15 N -0.158 5.158 16 C -0.094 4.094 17 C -0.323 4.323 18 C -0.156 4.156 19 N -0.160 5.160 20 C -0.158 4.158 21 N -0.303 5.303 22 C 0.052 3.948 23 H 0.258 0.742 24 H 0.122 0.878 25 H -0.226 1.226 26 H -0.215 1.215 27 H 0.175 0.825 28 H 0.263 0.737 29 H 0.067 0.933 30 H 0.117 0.883 31 H 0.144 0.856 32 H 0.112 0.888 33 H 0.221 0.779 34 H 0.178 0.822 35 H 0.213 0.787 36 H 0.134 0.866 37 H 0.103 0.897 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -0.385 -2.209 -3.230 3.932 hybrid contribution -0.915 0.026 0.332 0.973 sum -1.300 -2.183 -2.899 3.855 Atomic orbital electron populations 1.86439 1.17062 1.82388 1.51644 1.24378 0.85902 1.10147 0.95898 0.94201 0.77470 0.75772 0.84967 1.21068 1.07125 0.97275 1.00598 1.22850 0.89933 0.99238 0.87263 1.67867 1.28247 1.09115 1.25449 1.19713 0.87551 0.85573 0.87801 1.44225 1.57649 1.12156 1.17091 1.22484 0.92922 0.96328 0.85214 0.88274 1.23565 0.97313 1.01844 0.95325 1.22493 0.98007 0.99685 0.92896 0.89654 1.21998 1.04633 0.89918 0.81448 1.48953 1.16851 1.24473 1.25511 1.23171 0.92797 1.01051 0.92390 1.21874 1.02292 1.01534 1.06563 1.24326 0.95195 1.00758 0.95311 1.77260 1.19973 1.02096 1.16659 1.23346 1.00264 0.99956 0.92254 1.68053 1.17000 1.40281 1.04986 1.23324 0.88585 0.91242 0.91689 0.74226 0.87754 1.22615 1.21543 0.82472 0.73744 0.93328 0.88340 0.85585 0.88751 0.77866 0.82161 0.78696 0.86588 0.89679 0.78580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 1.53 12.82 -148.98 -1.91 -0.38 16 2 C -0.05 0.14 2.82 71.23 0.20 0.34 16 3 Si 0.77 -2.49 29.91 68.60 2.05 -0.44 16 4 C -0.25 -1.15 5.40 -19.69 -0.11 -1.26 16 5 C 0.17 1.45 9.92 84.71 0.84 2.29 16 6 N -0.58 -6.34 9.13 -197.98 -1.81 -8.14 16 7 C 0.55 4.85 8.43 261.49 2.20 7.05 16 8 N -0.67 -1.81 5.50 -327.94 -1.80 -3.61 16 9 C 0.14 0.14 4.25 45.52 0.19 0.33 16 10 H 0.10 0.56 7.37 -2.39 -0.02 0.54 16 11 C -0.14 -0.05 7.43 31.12 0.23 0.19 16 12 C -0.11 0.16 3.87 -10.27 -0.04 0.12 16 13 H 0.09 0.35 7.96 -2.39 -0.02 0.33 16 14 C 0.14 -0.45 6.35 86.38 0.55 0.10 16 15 N -0.38 -1.31 3.68 -348.06 -1.28 -2.60 16 16 C 0.05 0.05 11.45 83.54 0.96 1.01 16 17 C -0.29 -0.92 10.80 21.99 0.24 -0.68 16 18 C 0.03 0.18 12.03 85.24 1.03 1.20 16 19 N -0.34 -3.12 12.27 -57.02 -0.70 -3.82 16 20 C -0.12 0.55 7.39 31.12 0.23 0.78 16 21 N -0.58 -4.74 10.46 -197.99 -2.07 -6.82 16 22 C 0.22 1.02 10.99 84.71 0.93 1.95 16 23 H 0.41 -5.41 8.74 -74.05 -0.65 -6.06 16 24 H 0.10 -0.84 7.96 -2.38 -0.02 -0.86 16 25 H -0.30 -1.44 7.07 99.48 0.70 -0.74 16 26 H -0.29 -0.73 7.11 99.48 0.71 -0.02 16 27 H 0.16 1.02 5.04 -2.91 -0.01 1.00 16 28 H 0.42 -0.58 8.84 -92.71 -0.82 -1.40 16 29 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.10 -0.22 7.90 -2.39 -0.02 -0.24 16 31 H 0.13 -1.16 7.77 -2.38 -0.02 -1.18 16 32 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 33 H 0.20 -1.40 8.06 -2.91 -0.02 -1.43 16 34 H 0.16 -0.13 8.06 -2.91 -0.02 -0.15 16 35 H 0.20 0.19 8.06 -2.91 -0.02 0.17 16 36 H 0.12 -1.07 8.08 -2.39 -0.02 -1.09 16 37 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 38 H 0.20 -0.30 8.06 -2.91 -0.02 -0.32 16 Total: 0.00 -23.98 325.38 -0.41 -24.38 By element: Atomic # 1 Polarization: -11.66 SS G_CDS: -0.34 Total: -12.00 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 7.45 Total: 13.42 kcal Atomic # 7 Polarization: -17.32 SS G_CDS: -7.66 Total: -24.98 kcal Atomic # 8 Polarization: 1.53 SS G_CDS: -1.91 Total: -0.38 kcal Atomic # 14 Polarization: -2.49 SS G_CDS: 2.05 Total: -0.44 kcal Total: -23.98 -0.41 -24.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687798_12175864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.754 kcal (2) G-P(sol) polarization free energy of solvation -23.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds