Wall clock time and date at job start Mon Mar 8 2021 07:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86298 * 109.47107 * 2 1 4 4 C 1.50703 * 109.47266 * 239.99782 * 2 1 3 5 5 C 1.38019 * 120.33199 * 119.99566 * 4 2 1 6 6 N 1.31973 * 120.85191 * 179.72365 * 5 4 2 7 7 C 1.32394 * 121.62797 * 0.26010 * 6 5 4 8 8 N 1.39004 * 119.71023 * 180.02562 * 7 6 5 9 9 C 1.46497 * 120.00202 * 179.97438 * 8 7 6 10 10 H 1.09003 * 112.84664 * 25.32673 * 9 8 7 11 11 C 1.53775 * 113.61414 * 156.52846 * 9 8 7 12 12 C 1.53785 * 87.08224 * 139.98252 * 11 9 8 13 13 H 1.08999 * 113.61151 * 89.11448 * 12 11 9 14 14 C 1.52995 * 113.61415 * 219.93571 * 12 11 9 15 15 N 1.46498 * 109.47161 * 184.99831 * 14 12 11 16 16 C 1.34945 * 126.03741 * 124.71320 * 15 14 12 17 17 C 1.35315 * 107.74729 * 179.84057 * 16 15 14 18 18 C 1.39870 * 107.91620 * 0.42090 * 17 16 15 19 19 N 1.30830 * 108.20697 * 359.74205 * 18 17 16 20 20 C 1.53784 * 113.61412 * 254.13746 * 9 8 7 21 21 C 1.39139 * 120.58436 * 359.97438 * 7 6 5 22 22 C 1.38303 * 119.09870 * 0.02562 * 21 7 6 23 23 H 0.96698 * 114.00137 * 60.00377 * 1 2 3 24 24 H 1.08997 * 109.47054 * 120.00370 * 2 1 3 25 25 H 1.48502 * 110.00028 * 298.68109 * 3 2 1 26 26 H 1.48498 * 110.00039 * 60.00063 * 3 2 1 27 27 H 1.08002 * 119.57644 * 0.02562 * 5 4 2 28 28 H 0.97001 * 119.99585 * 359.97438 * 8 7 6 29 29 H 1.08998 * 113.61459 * 254.53001 * 11 9 8 30 30 H 1.08995 * 113.61779 * 25.42942 * 11 9 8 31 31 H 1.09002 * 109.46947 * 304.99721 * 14 12 11 32 32 H 1.08997 * 109.47388 * 64.99557 * 14 12 11 33 33 H 1.08002 * 126.12693 * 0.02562 * 16 15 14 34 34 H 1.08003 * 126.04544 * 180.16202 * 17 16 15 35 35 H 1.08003 * 125.89732 * 179.75713 * 18 17 16 36 36 H 1.08997 * 113.61268 * 334.56411 * 20 9 8 37 37 H 1.09001 * 113.61590 * 105.46981 * 20 9 8 38 38 H 1.08004 * 120.45005 * 179.97438 * 21 7 6 39 39 H 1.07994 * 120.74650 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7252 -0.0463 -2.1435 6 7 3.1752 -0.6600 -3.2217 7 6 2.8821 -1.9265 -3.4730 8 7 3.3782 -2.5337 -4.6207 9 6 3.0584 -3.9349 -4.9047 10 1 2.1276 -4.2593 -4.4394 11 6 3.1625 -4.3006 -6.3947 12 6 3.7913 -5.6296 -5.9437 13 1 3.0614 -6.4186 -5.7622 14 6 4.9545 -6.0877 -6.8257 15 7 5.4055 -7.4118 -6.3903 16 6 5.5030 -8.5120 -7.1656 17 6 5.9590 -9.5234 -6.3910 18 6 6.1375 -9.0266 -5.0958 19 7 5.8059 -7.7610 -5.0941 20 6 4.2346 -4.8960 -4.6648 21 6 2.0829 -2.6553 -2.5977 22 6 1.5965 -2.0387 -1.4593 23 1 -0.3933 0.4416 -0.7650 24 1 1.7922 -0.5139 0.8899 25 1 1.5878 2.4585 -1.2242 26 1 1.5614 2.4679 1.2085 27 1 2.9854 0.9876 -1.9710 28 1 3.9361 -2.0297 -5.2336 29 1 2.1956 -4.4189 -6.8839 30 1 3.8458 -3.6620 -6.9544 31 1 4.6252 -6.1392 -7.8635 32 1 5.7769 -5.3775 -6.7403 33 1 5.2631 -8.5734 -8.2169 34 1 6.1476 -10.5364 -6.7146 35 1 6.4886 -9.5904 -4.2441 36 1 5.2116 -4.4204 -4.7507 37 1 4.1320 -5.4943 -3.7594 38 1 1.8448 -3.6881 -2.8051 39 1 0.9735 -2.5792 -0.7621 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14687798_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:38:06 Heat of formation + Delta-G solvation = 127.034982 kcal Electronic energy + Delta-G solvation = -21553.001948 eV Core-core repulsion = 18272.270346 eV Total energy + Delta-G solvation = -3280.731602 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.04293 -41.49491 -40.19198 -38.04464 -35.79480 -33.86473 -33.32069 -31.33719 -30.87613 -28.48224 -26.74177 -26.37119 -24.92981 -23.94112 -22.45890 -21.90513 -21.38800 -20.70753 -18.78172 -18.55149 -18.21502 -17.53423 -16.60634 -16.47415 -16.33376 -16.18451 -15.67995 -15.35233 -15.28574 -14.96196 -14.77863 -14.40588 -14.03882 -13.97891 -13.56887 -13.56796 -13.44102 -13.22611 -12.98713 -12.49754 -12.14239 -12.05541 -11.87104 -11.63463 -11.33333 -11.06818 -10.78028 -10.54753 -10.42999 -10.32637 -9.47888 -8.69945 -4.91790 0.20309 0.37770 1.02099 1.32908 1.59962 1.67781 1.95490 1.97037 2.12000 2.79147 3.34016 3.43221 3.47449 3.58401 3.65296 3.76237 3.76852 3.97400 4.00100 4.05148 4.09501 4.24009 4.27049 4.34638 4.37918 4.58855 4.67891 4.72805 4.73980 4.77756 4.80909 4.92998 4.98440 5.04557 5.05035 5.17445 5.22637 5.33866 5.54851 5.77124 6.02678 6.19989 6.49198 6.54548 6.80675 7.12818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.064 4.064 3 Si 0.757 3.243 4 C -0.235 4.235 5 C 0.146 3.854 6 N -0.564 5.564 7 C 0.395 3.605 8 N -0.706 5.706 9 C 0.128 3.872 10 H 0.111 0.889 11 C -0.120 4.120 12 C -0.110 4.110 13 H 0.091 0.909 14 C 0.138 3.862 15 N -0.377 5.377 16 C 0.052 3.948 17 C -0.293 4.293 18 C 0.026 3.974 19 N -0.329 5.329 20 C -0.136 4.136 21 C -0.244 4.244 22 C -0.013 4.013 23 H 0.385 0.615 24 H 0.124 0.876 25 H -0.283 1.283 26 H -0.300 1.300 27 H 0.169 0.831 28 H 0.408 0.592 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.128 0.872 32 H 0.086 0.914 33 H 0.205 0.795 34 H 0.159 0.841 35 H 0.194 0.806 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.145 0.855 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.620 -2.190 -4.961 5.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.174 4.174 3 Si 0.663 3.337 4 C -0.240 4.240 5 C -0.010 4.010 6 N -0.282 5.282 7 C 0.159 3.841 8 N -0.337 5.337 9 C 0.023 3.977 10 H 0.129 0.871 11 C -0.159 4.159 12 C -0.129 4.129 13 H 0.109 0.891 14 C 0.017 3.983 15 N -0.159 5.159 16 C -0.095 4.095 17 C -0.322 4.322 18 C -0.160 4.160 19 N -0.151 5.151 20 C -0.176 4.176 21 C -0.269 4.269 22 C -0.038 4.038 23 H 0.234 0.766 24 H 0.142 0.858 25 H -0.209 1.209 26 H -0.228 1.228 27 H 0.185 0.815 28 H 0.245 0.755 29 H 0.111 0.889 30 H 0.123 0.877 31 H 0.146 0.854 32 H 0.104 0.896 33 H 0.222 0.778 34 H 0.177 0.823 35 H 0.211 0.789 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.162 0.838 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.815 -0.213 -4.395 4.475 hybrid contribution -1.208 -1.281 -0.396 1.804 sum -0.393 -1.494 -4.791 5.034 Atomic orbital electron populations 1.86558 1.18698 1.80309 1.50123 1.24920 0.83167 1.11235 0.98055 0.94205 0.90513 0.72413 0.76583 1.20973 1.05972 0.96610 1.00460 1.22477 0.91506 0.99334 0.87731 1.67175 1.28272 1.09793 1.22973 1.18690 0.89298 0.88392 0.87679 1.44604 1.55064 1.11848 1.22215 1.22642 0.98571 0.78919 0.97598 0.87103 1.23300 1.02777 0.94888 0.94929 1.22529 0.97105 0.97033 0.96265 0.89097 1.21997 0.96843 0.79536 0.99885 1.48988 1.50572 1.10002 1.06380 1.23186 1.00218 0.86505 0.99564 1.21862 1.14638 1.02025 0.93719 1.24325 0.99770 0.92336 0.99536 1.77320 1.21550 1.16190 1.00056 1.23496 0.98855 0.97159 0.98053 1.21650 1.05239 1.02447 0.97548 1.21389 0.93935 0.93427 0.95090 0.76629 0.85797 1.20947 1.22767 0.81493 0.75518 0.88940 0.87713 0.85393 0.89570 0.77781 0.82306 0.78939 0.90234 0.92506 0.83755 0.83818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.66 12.78 -148.98 -1.90 -3.56 16 2 C -0.06 -0.02 2.84 71.24 0.20 0.19 16 3 Si 0.76 -0.71 29.82 68.60 2.05 1.33 16 4 C -0.23 -0.47 5.40 -19.76 -0.11 -0.58 16 5 C 0.15 0.48 9.84 84.62 0.83 1.32 16 6 N -0.56 -3.61 10.39 -193.26 -2.01 -5.62 16 7 C 0.40 1.64 7.65 133.07 1.02 2.65 16 8 N -0.71 0.41 5.53 -322.05 -1.78 -1.38 16 9 C 0.13 -0.53 3.98 45.52 0.18 -0.35 16 10 H 0.11 -0.49 6.17 -2.39 -0.01 -0.50 16 11 C -0.12 1.01 7.39 31.12 0.23 1.24 16 12 C -0.11 0.59 3.82 -10.21 -0.04 0.55 16 13 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 14 C 0.14 -0.75 6.35 86.38 0.55 -0.20 16 15 N -0.38 -0.44 3.68 -348.07 -1.28 -1.72 16 16 C 0.05 -0.06 11.45 83.54 0.96 0.89 16 17 C -0.29 -0.37 10.80 21.99 0.24 -0.13 16 18 C 0.03 0.11 12.02 85.24 1.02 1.13 16 19 N -0.33 -2.24 12.42 -57.02 -0.71 -2.95 16 20 C -0.14 0.25 7.45 31.18 0.23 0.48 16 21 C -0.24 -0.59 9.28 22.50 0.21 -0.38 16 22 C -0.01 -0.03 9.76 22.44 0.22 0.19 16 23 H 0.38 -0.84 8.70 -74.06 -0.64 -1.48 16 24 H 0.12 -0.18 7.96 -2.39 -0.02 -0.19 16 25 H -0.28 -0.86 7.11 99.48 0.71 -0.16 16 26 H -0.30 -1.93 7.11 99.48 0.71 -1.22 16 27 H 0.17 -0.15 4.88 -2.91 -0.01 -0.16 16 28 H 0.41 -0.75 8.84 -92.71 -0.82 -1.57 16 29 H 0.09 -0.90 8.14 -2.39 -0.02 -0.92 16 30 H 0.10 -1.09 8.07 -2.39 -0.02 -1.11 16 31 H 0.13 -1.47 8.07 -2.39 -0.02 -1.49 16 32 H 0.09 -0.45 7.86 -2.39 -0.02 -0.47 16 33 H 0.21 -1.87 8.06 -2.91 -0.02 -1.89 16 34 H 0.16 -0.38 8.06 -2.91 -0.02 -0.41 16 35 H 0.19 -0.08 8.06 -2.91 -0.02 -0.11 16 36 H 0.08 0.01 7.91 -2.39 -0.02 -0.01 16 37 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.14 -0.13 6.06 -2.91 -0.02 -0.15 16 39 H 0.14 -0.01 8.06 -2.91 -0.02 -0.03 16 Total: 0.00 -18.73 328.04 -0.23 -18.96 By element: Atomic # 1 Polarization: -11.72 SS G_CDS: -0.34 Total: -12.06 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 5.75 Total: 7.00 kcal Atomic # 7 Polarization: -5.90 SS G_CDS: -5.78 Total: -11.67 kcal Atomic # 8 Polarization: -1.66 SS G_CDS: -1.90 Total: -3.56 kcal Atomic # 14 Polarization: -0.71 SS G_CDS: 2.05 Total: 1.33 kcal Total: -18.73 -0.23 -18.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687798_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.999 kcal (2) G-P(sol) polarization free energy of solvation -18.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds