Wall clock time and date at job start Mon Mar 8 2021 07:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46814 * 2 1 4 4 C 1.50702 * 109.46810 * 240.00602 * 2 1 3 5 5 C 1.33328 * 125.94937 * 299.99495 * 4 2 1 6 6 N 1.32124 * 114.57552 * 180.02562 * 5 4 2 7 7 C 1.29686 * 116.86646 * 359.97438 * 6 5 4 8 8 N 1.38615 * 124.94620 * 179.97438 * 7 6 5 9 9 C 1.46498 * 119.99892 * 0.02562 * 8 7 6 10 10 H 1.08996 * 112.85096 * 23.81499 * 9 8 7 11 11 C 1.53786 * 113.60920 * 155.00044 * 9 8 7 12 12 C 1.53785 * 87.07744 * 140.06902 * 11 9 8 13 13 H 1.09005 * 113.61152 * 89.20679 * 12 11 9 14 14 C 1.52997 * 113.61402 * 220.01848 * 12 11 9 15 15 N 1.46506 * 109.47289 * 185.00128 * 14 12 11 16 16 C 1.34946 * 126.03900 * 124.99874 * 15 14 12 17 17 C 1.35310 * 107.74562 * 179.97438 * 16 15 14 18 18 C 1.39865 * 107.92139 * 359.97438 * 17 16 15 19 19 N 1.30837 * 108.20358 * 359.74653 * 18 17 16 20 20 C 1.53772 * 113.69535 * 252.53846 * 9 8 7 21 21 S 1.70962 * 110.10245 * 0.24666 * 7 6 5 22 22 H 0.96701 * 114.00496 * 60.00165 * 1 2 3 23 23 H 1.08993 * 109.47459 * 120.00227 * 2 1 3 24 24 H 1.48502 * 109.99979 * 60.00377 * 3 2 1 25 25 H 1.48504 * 109.99939 * 181.31778 * 3 2 1 26 26 H 1.07993 * 122.71199 * 0.02562 * 5 4 2 27 27 H 0.96998 * 119.99658 * 180.02562 * 8 7 6 28 28 H 1.09000 * 113.61305 * 25.52811 * 11 9 8 29 29 H 1.09001 * 113.69276 * 254.62555 * 11 9 8 30 30 H 1.09001 * 109.47289 * 65.00000 * 14 12 11 31 31 H 1.09004 * 109.47261 * 305.00256 * 14 12 11 32 32 H 1.08002 * 126.12306 * 359.96124 * 16 15 14 33 33 H 1.08007 * 126.03787 * 179.97438 * 17 16 15 34 34 H 1.08000 * 125.89658 * 179.97438 * 18 17 16 35 35 H 1.08995 * 113.61642 * 105.46574 * 20 9 8 36 36 H 1.08997 * 113.61730 * 334.55879 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 1.6834 -1.9787 -1.5582 6 7 2.2384 -2.3722 -2.6908 7 6 2.9428 -1.4940 -3.3344 8 7 3.5968 -1.7256 -4.5345 9 6 3.5195 -3.0441 -5.1682 10 1 2.6375 -3.6083 -4.8652 11 6 3.7356 -3.0095 -6.6904 12 6 4.5534 -4.3013 -6.5245 13 1 3.9542 -5.2092 -6.5938 14 6 5.8078 -4.3491 -7.3991 15 7 6.4500 -5.6586 -7.2608 16 6 6.7581 -6.5022 -8.2680 17 6 7.3373 -7.5981 -7.7254 18 6 7.3855 -7.4179 -6.3393 19 7 6.8591 -6.2531 -6.0601 20 6 4.8264 -3.8497 -5.0800 21 16 2.9535 -0.0112 -2.4835 22 1 -0.3934 0.4417 -0.7650 23 1 1.7924 -0.5138 0.8899 24 1 1.5614 2.4678 1.2086 25 1 3.5345 1.7704 -0.0321 26 1 1.0780 -2.6317 -0.9471 27 1 4.1057 -1.0146 -4.9545 28 1 4.3273 -2.1586 -7.0281 29 1 2.8197 -3.1434 -7.2660 30 1 6.5009 -3.5693 -7.0834 31 1 5.5306 -4.1887 -8.4411 32 1 6.5748 -6.3330 -9.3188 33 1 7.6987 -8.4599 -8.2671 34 1 7.7908 -8.1176 -5.6234 35 1 4.7903 -4.6623 -4.3544 36 1 5.7162 -3.2286 -4.9776 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14687798_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:38:09 Heat of formation + Delta-G solvation = 131.466142 kcal Electronic energy + Delta-G solvation = -20120.232969 eV Core-core repulsion = 16928.845762 eV Total energy + Delta-G solvation = -3191.387206 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.04737 -40.95020 -40.06485 -37.85523 -35.77836 -33.73694 -31.24658 -30.89624 -28.65236 -26.88965 -26.54993 -25.04429 -23.64884 -21.92635 -21.73589 -21.04650 -20.59507 -19.50039 -18.34722 -18.04279 -17.07004 -16.70661 -16.47909 -16.33169 -15.85661 -15.60473 -15.37522 -15.14231 -14.90911 -14.82364 -14.07117 -13.97810 -13.67116 -13.60824 -13.49209 -13.17492 -12.85845 -12.35241 -12.26651 -12.04470 -11.98120 -11.62724 -11.40388 -11.07504 -10.75037 -10.29661 -10.22092 -10.12783 -9.47522 -8.72414 -5.12418 -0.00605 0.05060 0.71075 1.02047 1.27636 1.58021 1.60003 1.92040 2.00968 2.05929 2.14481 3.18808 3.32289 3.44697 3.50621 3.64868 3.76168 3.92013 3.94365 3.96617 4.06889 4.16899 4.26110 4.49810 4.51676 4.59276 4.62430 4.73367 4.77257 4.86284 4.92106 5.03489 5.07045 5.15660 5.30019 5.78386 5.85717 6.05145 6.10904 6.53977 6.83875 7.03199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.010 4.010 3 Si 0.656 3.344 4 C -0.307 4.307 5 C 0.120 3.880 6 N -0.551 5.551 7 C 0.327 3.673 8 N -0.682 5.682 9 C 0.139 3.861 10 H 0.119 0.881 11 C -0.139 4.139 12 C -0.118 4.118 13 H 0.100 0.900 14 C 0.145 3.855 15 N -0.373 5.373 16 C 0.050 3.950 17 C -0.274 4.274 18 C 0.042 3.958 19 N -0.289 5.289 20 C -0.135 4.135 21 S 0.085 5.915 22 H 0.380 0.620 23 H 0.121 0.879 24 H -0.236 1.236 25 H -0.241 1.241 26 H 0.176 0.824 27 H 0.414 0.586 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.172 0.828 33 H 0.147 0.853 34 H 0.182 0.818 35 H 0.077 0.923 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.181 2.562 -5.887 6.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.124 4.124 3 Si 0.556 3.444 4 C -0.430 4.430 5 C -0.031 4.031 6 N -0.276 5.276 7 C -0.043 4.043 8 N -0.320 5.320 9 C 0.032 3.968 10 H 0.136 0.864 11 C -0.178 4.178 12 C -0.138 4.138 13 H 0.118 0.882 14 C 0.024 3.976 15 N -0.155 5.155 16 C -0.096 4.096 17 C -0.304 4.304 18 C -0.144 4.144 19 N -0.111 5.111 20 C -0.174 4.174 21 S 0.334 5.666 22 H 0.227 0.773 23 H 0.138 0.862 24 H -0.159 1.159 25 H -0.165 1.165 26 H 0.193 0.807 27 H 0.251 0.749 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.190 0.810 33 H 0.165 0.835 34 H 0.199 0.801 35 H 0.096 0.904 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.768 4.121 -4.451 6.114 hybrid contribution 0.091 -1.610 -0.345 1.649 sum 0.859 2.511 -4.796 5.481 Atomic orbital electron populations 1.86511 1.16915 1.81688 1.49118 1.24113 0.84807 1.08893 0.94635 0.94994 0.81989 0.78100 0.89344 1.25569 1.13219 0.99340 1.04885 1.21327 0.97025 0.92983 0.91759 1.66473 1.17135 1.33517 1.10438 1.23779 0.94827 0.93391 0.92335 1.44082 1.54188 1.14371 1.19365 1.22581 0.99668 0.83069 0.91487 0.86361 1.23423 1.00812 0.97456 0.96120 1.22611 0.95861 0.98768 0.96518 0.88166 1.21734 0.93573 0.81029 1.01297 1.48732 1.46682 1.15773 1.04344 1.22604 1.00271 0.91660 0.95052 1.21560 1.12714 1.01618 0.94486 1.23953 0.99219 0.95005 0.96270 1.77400 1.18855 1.09971 1.04850 1.23487 0.97839 0.99948 0.96145 1.83961 1.51446 1.14059 1.17145 0.77280 0.86165 1.15915 1.16539 0.80727 0.74878 0.89116 0.89930 0.89648 0.88351 0.81037 0.83550 0.80106 0.90404 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.24 12.87 -35.23 -0.45 -0.69 16 2 C -0.01 0.00 2.99 36.01 0.11 0.11 16 3 Si 0.66 -0.30 31.05 -169.99 -5.28 -5.58 16 4 C -0.31 -0.33 5.74 -36.02 -0.21 -0.53 16 5 C 0.12 0.28 11.22 -19.14 -0.21 0.06 16 6 N -0.55 -1.82 9.83 -15.21 -0.15 -1.97 16 7 C 0.33 0.46 8.09 -87.68 -0.71 -0.24 16 8 N -0.68 0.65 5.51 -55.00 -0.30 0.35 16 9 C 0.14 -0.15 4.35 -67.12 -0.29 -0.44 16 10 H 0.12 0.09 7.66 -51.93 -0.40 -0.30 16 11 C -0.14 0.48 7.39 -25.91 -0.19 0.29 16 12 C -0.12 0.23 3.83 -89.81 -0.34 -0.12 16 13 H 0.10 -0.06 8.14 -51.93 -0.42 -0.48 16 14 C 0.15 -0.30 6.34 -4.04 -0.03 -0.33 16 15 N -0.37 -0.38 3.68 -61.36 -0.23 -0.61 16 16 C 0.05 0.00 11.45 -17.23 -0.20 -0.19 16 17 C -0.27 -0.26 10.80 -40.02 -0.43 -0.69 16 18 C 0.04 0.09 12.03 -17.37 -0.21 -0.12 16 19 N -0.29 -0.99 12.42 30.62 0.38 -0.61 16 20 C -0.13 0.06 7.43 -25.92 -0.19 -0.14 16 21 S 0.08 0.01 20.57 -107.50 -2.21 -2.20 16 22 H 0.38 -1.21 8.70 45.56 0.40 -0.81 16 23 H 0.12 0.05 7.96 -51.93 -0.41 -0.37 16 24 H -0.24 -0.51 7.11 56.52 0.40 -0.10 16 25 H -0.24 -0.44 7.11 56.52 0.40 -0.03 16 26 H 0.18 0.23 8.06 -52.49 -0.42 -0.20 16 27 H 0.41 -1.36 8.85 -40.82 -0.36 -1.72 16 28 H 0.09 -0.44 8.08 -51.93 -0.42 -0.86 16 29 H 0.08 -0.30 8.14 -51.93 -0.42 -0.72 16 30 H 0.09 -0.20 7.84 -51.93 -0.41 -0.61 16 31 H 0.10 -0.44 8.07 -51.93 -0.42 -0.86 16 32 H 0.17 -0.56 8.06 -52.49 -0.42 -0.98 16 33 H 0.15 -0.12 8.06 -52.48 -0.42 -0.54 16 34 H 0.18 -0.07 8.06 -52.49 -0.42 -0.50 16 35 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 36 H 0.08 -0.03 7.90 -51.93 -0.41 -0.44 16 LS Contribution 323.55 15.07 4.88 4.88 Total: 0.00 -7.71 323.55 -10.86 -18.58 By element: Atomic # 1 Polarization: -5.21 SS G_CDS: -4.59 Total: -9.80 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -2.91 Total: -2.35 kcal Atomic # 7 Polarization: -2.54 SS G_CDS: -0.30 Total: -2.84 kcal Atomic # 8 Polarization: -0.24 SS G_CDS: -0.45 Total: -0.69 kcal Atomic # 14 Polarization: -0.30 SS G_CDS: -5.28 Total: -5.58 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -2.21 Total: -2.20 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -7.71 -10.86 -18.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687798_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.043 kcal (2) G-P(sol) polarization free energy of solvation -7.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds