Wall clock time and date at job start Mon Mar 8 2021 07:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46814 * 2 1 4 4 C 1.50702 * 109.46810 * 240.00602 * 2 1 3 5 5 C 1.33328 * 125.94937 * 299.99495 * 4 2 1 6 6 N 1.32124 * 114.57552 * 180.02562 * 5 4 2 7 7 C 1.29686 * 116.86646 * 359.97438 * 6 5 4 8 8 N 1.38615 * 124.94620 * 179.97438 * 7 6 5 9 9 C 1.46498 * 119.99892 * 0.02562 * 8 7 6 10 10 H 1.08996 * 112.85096 * 23.81499 * 9 8 7 11 11 C 1.53786 * 113.60920 * 155.00044 * 9 8 7 12 12 C 1.53785 * 87.07744 * 140.06902 * 11 9 8 13 13 H 1.09005 * 113.61152 * 89.20679 * 12 11 9 14 14 C 1.52997 * 113.61402 * 220.01848 * 12 11 9 15 15 N 1.46506 * 109.47289 * 185.00128 * 14 12 11 16 16 C 1.34946 * 126.03900 * 124.99874 * 15 14 12 17 17 C 1.35310 * 107.74562 * 179.97438 * 16 15 14 18 18 C 1.39865 * 107.92139 * 359.97438 * 17 16 15 19 19 N 1.30837 * 108.20358 * 359.74653 * 18 17 16 20 20 C 1.53772 * 113.69535 * 252.53846 * 9 8 7 21 21 S 1.70962 * 110.10245 * 0.24666 * 7 6 5 22 22 H 0.96701 * 114.00496 * 60.00165 * 1 2 3 23 23 H 1.08993 * 109.47459 * 120.00227 * 2 1 3 24 24 H 1.48502 * 109.99979 * 60.00377 * 3 2 1 25 25 H 1.48504 * 109.99939 * 181.31778 * 3 2 1 26 26 H 1.07993 * 122.71199 * 0.02562 * 5 4 2 27 27 H 0.96998 * 119.99658 * 180.02562 * 8 7 6 28 28 H 1.09000 * 113.61305 * 25.52811 * 11 9 8 29 29 H 1.09001 * 113.69276 * 254.62555 * 11 9 8 30 30 H 1.09001 * 109.47289 * 65.00000 * 14 12 11 31 31 H 1.09004 * 109.47261 * 305.00256 * 14 12 11 32 32 H 1.08002 * 126.12306 * 359.96124 * 16 15 14 33 33 H 1.08007 * 126.03787 * 179.97438 * 17 16 15 34 34 H 1.08000 * 125.89658 * 179.97438 * 18 17 16 35 35 H 1.08995 * 113.61642 * 105.46574 * 20 9 8 36 36 H 1.08997 * 113.61730 * 334.55879 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 1.6834 -1.9787 -1.5582 6 7 2.2384 -2.3722 -2.6908 7 6 2.9428 -1.4940 -3.3344 8 7 3.5968 -1.7256 -4.5345 9 6 3.5195 -3.0441 -5.1682 10 1 2.6375 -3.6083 -4.8652 11 6 3.7356 -3.0095 -6.6904 12 6 4.5534 -4.3013 -6.5245 13 1 3.9542 -5.2092 -6.5938 14 6 5.8078 -4.3491 -7.3991 15 7 6.4500 -5.6586 -7.2608 16 6 6.7581 -6.5022 -8.2680 17 6 7.3373 -7.5981 -7.7254 18 6 7.3855 -7.4179 -6.3393 19 7 6.8591 -6.2531 -6.0601 20 6 4.8264 -3.8497 -5.0800 21 16 2.9535 -0.0112 -2.4835 22 1 -0.3934 0.4417 -0.7650 23 1 1.7924 -0.5138 0.8899 24 1 1.5614 2.4678 1.2086 25 1 3.5345 1.7704 -0.0321 26 1 1.0780 -2.6317 -0.9471 27 1 4.1057 -1.0146 -4.9545 28 1 4.3273 -2.1586 -7.0281 29 1 2.8197 -3.1434 -7.2660 30 1 6.5009 -3.5693 -7.0834 31 1 5.5306 -4.1887 -8.4411 32 1 6.5748 -6.3330 -9.3188 33 1 7.6987 -8.4599 -8.2671 34 1 7.7908 -8.1176 -5.6234 35 1 4.7903 -4.6623 -4.3544 36 1 5.7162 -3.2286 -4.9776 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14687798_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:38:09 Heat of formation + Delta-G solvation = 133.028189 kcal Electronic energy + Delta-G solvation = -20120.165233 eV Core-core repulsion = 16928.845762 eV Total energy + Delta-G solvation = -3191.319471 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.04313 -40.97451 -40.05411 -37.87713 -35.75213 -33.70975 -31.30498 -30.91772 -28.60632 -26.82890 -26.53887 -25.06575 -23.65286 -21.92569 -21.74607 -20.96574 -20.64057 -19.49962 -18.33758 -18.04360 -17.05812 -16.68865 -16.42195 -16.36218 -15.90147 -15.60299 -15.39283 -15.16240 -14.90796 -14.83073 -14.10184 -14.00382 -13.58234 -13.48568 -13.43384 -13.07530 -12.89221 -12.47461 -12.22182 -12.00544 -11.92851 -11.65166 -11.34941 -11.07093 -10.81254 -10.33941 -10.29201 -10.18397 -9.48824 -8.74873 -5.12311 -0.08397 0.00126 0.63873 1.01378 1.25345 1.56871 1.68121 1.87176 1.94705 1.95761 2.19641 3.33220 3.45852 3.48977 3.59658 3.72873 3.79872 3.92042 3.99542 4.08917 4.21555 4.30729 4.37913 4.46635 4.66735 4.69056 4.70064 4.77299 4.81308 4.92156 4.97249 5.03068 5.06015 5.16309 5.33744 5.75508 5.84613 6.16246 6.20309 6.71613 6.79569 7.00124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.015 4.015 3 Si 0.734 3.266 4 C -0.309 4.309 5 C 0.102 3.898 6 N -0.583 5.583 7 C 0.315 3.685 8 N -0.672 5.672 9 C 0.137 3.863 10 H 0.096 0.904 11 C -0.116 4.116 12 C -0.110 4.110 13 H 0.084 0.916 14 C 0.139 3.861 15 N -0.377 5.377 16 C 0.053 3.947 17 C -0.294 4.294 18 C 0.024 3.976 19 N -0.332 5.332 20 C -0.135 4.135 21 S 0.118 5.882 22 H 0.395 0.605 23 H 0.117 0.883 24 H -0.271 1.271 25 H -0.269 1.269 26 H 0.175 0.825 27 H 0.426 0.574 28 H 0.116 0.884 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.132 0.868 32 H 0.208 0.792 33 H 0.160 0.840 34 H 0.192 0.808 35 H 0.043 0.957 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.273 3.802 -7.833 8.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.129 4.129 3 Si 0.637 3.363 4 C -0.432 4.432 5 C -0.048 4.048 6 N -0.309 5.309 7 C -0.056 4.056 8 N -0.311 5.311 9 C 0.029 3.971 10 H 0.114 0.886 11 C -0.155 4.155 12 C -0.130 4.130 13 H 0.102 0.898 14 C 0.018 3.982 15 N -0.160 5.160 16 C -0.093 4.093 17 C -0.323 4.323 18 C -0.161 4.161 19 N -0.154 5.154 20 C -0.175 4.175 21 S 0.368 5.632 22 H 0.245 0.755 23 H 0.134 0.866 24 H -0.197 1.197 25 H -0.195 1.195 26 H 0.192 0.808 27 H 0.266 0.734 28 H 0.134 0.866 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.150 0.850 32 H 0.224 0.776 33 H 0.177 0.823 34 H 0.209 0.791 35 H 0.062 0.938 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.853 5.364 -6.426 8.414 hybrid contribution 0.070 -2.007 0.293 2.029 sum 0.923 3.357 -6.133 7.053 Atomic orbital electron populations 1.86476 1.16917 1.82142 1.50268 1.24259 0.84944 1.09501 0.94160 0.94094 0.79058 0.75737 0.87376 1.25713 1.13039 0.99158 1.05306 1.21413 0.97735 0.93691 0.91991 1.66464 1.18368 1.34837 1.11246 1.24035 0.94772 0.93879 0.92917 1.44130 1.53673 1.14744 1.18592 1.22511 0.98266 0.82823 0.93493 0.88627 1.23333 1.01127 0.97181 0.93813 1.22475 0.96194 0.98946 0.95366 0.89799 1.22027 0.93085 0.79948 1.03091 1.49005 1.46429 1.16632 1.03887 1.23204 0.98847 0.90918 0.96358 1.21863 1.13527 1.02749 0.94146 1.24313 0.99246 0.95092 0.97440 1.77330 1.20345 1.10960 1.06770 1.23442 0.98264 0.99126 0.96650 1.83752 1.50703 1.12705 1.16072 0.75475 0.86632 1.19671 1.19476 0.80776 0.73386 0.86601 0.89007 0.89128 0.85050 0.77561 0.82260 0.79094 0.93797 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.57 12.87 -148.98 -1.92 -2.48 16 2 C -0.02 -0.01 2.99 71.24 0.21 0.20 16 3 Si 0.73 -0.70 31.05 68.60 2.13 1.43 16 4 C -0.31 -0.82 5.74 24.58 0.14 -0.68 16 5 C 0.10 0.62 11.22 83.54 0.94 1.56 16 6 N -0.58 -4.72 9.83 -202.03 -1.99 -6.71 16 7 C 0.31 1.06 8.09 179.32 1.45 2.51 16 8 N -0.67 1.31 5.51 -327.91 -1.81 -0.50 16 9 C 0.14 -0.21 4.35 45.52 0.20 -0.01 16 10 H 0.10 0.33 7.66 -2.39 -0.02 0.31 16 11 C -0.12 0.96 7.39 31.12 0.23 1.19 16 12 C -0.11 0.43 3.83 -10.27 -0.04 0.39 16 13 H 0.08 -0.02 8.14 -2.38 -0.02 -0.04 16 14 C 0.14 -0.75 6.34 86.38 0.55 -0.20 16 15 N -0.38 -0.71 3.68 -348.05 -1.28 -1.99 16 16 C 0.05 -0.04 11.45 83.54 0.96 0.92 16 17 C -0.29 -0.60 10.80 21.99 0.24 -0.36 16 18 C 0.02 0.13 12.03 85.23 1.02 1.16 16 19 N -0.33 -2.71 12.42 -57.03 -0.71 -3.42 16 20 C -0.14 -0.07 7.43 31.12 0.23 0.17 16 21 S 0.12 0.02 20.57 -56.49 -1.16 -1.15 16 22 H 0.40 -2.64 8.70 -74.06 -0.64 -3.28 16 23 H 0.12 0.18 7.96 -2.39 -0.02 0.16 16 24 H -0.27 -1.33 7.11 99.48 0.71 -0.62 16 25 H -0.27 -0.97 7.11 99.48 0.71 -0.27 16 26 H 0.18 0.81 8.06 -2.91 -0.02 0.78 16 27 H 0.43 -3.25 8.85 -92.71 -0.82 -4.07 16 28 H 0.12 -1.48 8.08 -2.39 -0.02 -1.50 16 29 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 30 H 0.09 -0.56 7.84 -2.39 -0.02 -0.58 16 31 H 0.13 -1.58 8.07 -2.38 -0.02 -1.60 16 32 H 0.21 -1.87 8.06 -2.91 -0.02 -1.89 16 33 H 0.16 -0.28 8.06 -2.91 -0.02 -0.30 16 34 H 0.19 0.19 8.06 -2.91 -0.02 0.16 16 35 H 0.04 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.09 0.01 7.90 -2.39 -0.02 -0.01 16 Total: 0.00 -20.36 323.55 -0.92 -21.28 By element: Atomic # 1 Polarization: -12.98 SS G_CDS: -0.32 Total: -13.29 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 6.13 Total: 6.82 kcal Atomic # 7 Polarization: -6.83 SS G_CDS: -5.78 Total: -12.61 kcal Atomic # 8 Polarization: -0.57 SS G_CDS: -1.92 Total: -2.48 kcal Atomic # 14 Polarization: -0.70 SS G_CDS: 2.13 Total: 1.43 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -1.16 Total: -1.15 kcal Total: -20.36 -0.92 -21.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687798_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.309 kcal (2) G-P(sol) polarization free energy of solvation -20.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds