Wall clock time and date at job start Mon Mar 8 2021 07:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33326 * 125.95109 * 2 1 4 4 C 1.50699 * 122.70854 * 359.97438 * 3 2 1 5 5 O 1.42900 * 109.47646 * 329.99692 * 4 3 2 6 6 Si 1.86301 * 109.47086 * 209.99427 * 4 3 2 7 7 N 1.32115 * 114.57993 * 180.02562 * 3 2 1 8 8 C 1.29689 * 116.86755 * 359.97438 * 7 3 2 9 9 N 1.38611 * 124.94941 * 179.97438 * 8 7 3 10 10 C 1.46497 * 119.99890 * 180.02562 * 9 8 7 11 11 H 1.08996 * 112.85116 * 336.19440 * 10 9 8 12 12 C 1.53783 * 113.61816 * 107.50514 * 10 9 8 13 13 C 1.53781 * 87.08147 * 139.98009 * 12 10 9 14 14 H 1.09001 * 113.69100 * 89.12970 * 13 12 10 15 15 C 1.53007 * 113.61062 * 220.01715 * 13 12 10 16 16 N 1.46500 * 109.46993 * 272.50047 * 15 13 12 17 17 C 1.34943 * 126.03414 * 124.71725 * 16 15 13 18 18 C 1.35316 * 107.74531 * 180.25880 * 17 16 15 19 19 C 1.39873 * 107.91987 * 0.02562 * 18 17 16 20 20 N 1.30832 * 108.20166 * 0.02562 * 19 18 17 21 21 C 1.53780 * 87.08126 * 334.56831 * 13 12 10 22 22 S 1.70965 * 110.09982 * 0.24416 * 8 7 3 23 23 H 1.09004 * 109.47080 * 89.99740 * 1 2 3 24 24 H 1.09002 * 109.46739 * 209.99746 * 1 2 3 25 25 H 1.09000 * 109.47008 * 329.99568 * 1 2 3 26 26 H 1.09001 * 109.47437 * 89.99679 * 4 3 2 27 27 H 0.96691 * 114.00534 * 180.02562 * 5 4 3 28 28 H 1.48500 * 109.99978 * 60.00321 * 6 4 3 29 29 H 1.48502 * 110.00368 * 181.31865 * 6 4 3 30 30 H 0.97005 * 120.00357 * 0.02562 * 9 8 7 31 31 H 1.09006 * 113.61045 * 25.42796 * 12 10 9 32 32 H 1.09001 * 113.60819 * 254.53305 * 12 10 9 33 33 H 1.08997 * 109.46549 * 152.49690 * 15 13 12 34 34 H 1.08996 * 109.46944 * 32.50199 * 15 13 12 35 35 H 1.07996 * 126.13000 * 0.26422 * 17 16 15 36 36 H 1.07997 * 126.04396 * 180.02562 * 18 17 16 37 37 H 1.07999 * 125.89561 * 179.97438 * 19 18 17 38 38 H 1.09004 * 113.60980 * 139.98697 * 21 13 12 39 39 H 1.09000 * 113.61537 * 270.88362 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 -0.0006 5 8 0.4815 2.5020 -0.6747 6 14 2.9326 3.6147 -0.8785 7 7 3.5850 0.8188 -0.0005 8 6 3.9315 -0.4309 -0.0005 9 7 5.2385 -0.8925 -0.0015 10 6 5.5066 -2.3328 -0.0019 11 1 4.6809 -2.9171 0.4041 12 6 6.0351 -2.8607 -1.3461 13 6 6.9925 -3.7469 -0.5320 14 1 6.5745 -4.7193 -0.2716 15 6 8.3964 -3.8453 -1.1326 16 7 8.4357 -4.9399 -2.1054 17 6 8.8175 -4.8417 -3.3960 18 6 8.7063 -6.0696 -3.9536 19 6 8.2400 -6.9482 -2.9702 20 7 8.0766 -6.2720 -1.8622 21 6 6.8752 -2.7047 0.5926 22 16 2.5413 -1.4261 -0.0065 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.6087 2.8217 1.0269 27 1 0.0694 3.3758 -0.7136 28 1 3.1221 3.1637 -2.2806 29 1 2.4186 5.0078 -0.8582 30 1 5.9756 -0.2620 -0.0019 31 1 6.5426 -2.1033 -1.9435 32 1 5.2955 -3.4244 -1.9148 33 1 9.1182 -4.0382 -0.3390 34 1 8.6452 -2.9079 -1.6301 35 1 9.1520 -3.9440 -3.8945 36 1 8.9368 -6.3260 -4.9771 37 1 8.0472 -8.0025 -3.1030 38 1 6.8141 -3.1426 1.5890 39 1 7.6125 -1.9047 0.5253 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14687798_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:38:11 Heat of formation + Delta-G solvation = 132.059012 kcal Electronic energy + Delta-G solvation = -22121.296975 eV Core-core repulsion = 18774.397858 eV Total energy + Delta-G solvation = -3346.899117 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.110 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.04908 -41.10367 -40.35746 -37.87060 -35.89854 -33.84628 -32.50988 -30.97580 -29.48433 -28.27704 -26.78769 -25.71501 -24.69724 -23.63294 -22.08245 -21.70343 -20.90435 -19.90259 -19.36810 -18.40363 -18.09275 -17.39263 -16.73237 -16.54055 -16.30449 -16.01850 -15.70881 -15.42624 -15.10716 -14.56725 -14.38615 -14.16333 -13.97326 -13.88487 -13.71696 -13.51398 -13.48429 -13.32317 -13.02831 -12.92793 -12.43768 -12.24692 -11.97324 -11.78991 -11.55663 -11.47878 -11.04999 -10.72120 -10.45325 -10.31734 -10.04974 -9.47348 -8.62977 -4.80151 -0.04500 0.12263 0.71319 1.00922 1.26203 1.60252 1.66655 1.82928 1.87175 1.96139 2.02761 3.06816 3.33793 3.44951 3.52158 3.67955 3.83904 3.89127 4.08614 4.09921 4.18500 4.27696 4.32792 4.38963 4.48319 4.55477 4.67808 4.71143 4.77945 4.79027 4.87012 4.91166 4.95622 5.00877 5.05533 5.16668 5.23991 5.29975 5.67193 5.76199 6.19396 6.35075 6.61525 6.78980 6.87085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.254 4.254 3 C 0.088 3.912 4 C -0.044 4.044 5 O -0.547 6.547 6 Si 0.778 3.222 7 N -0.557 5.557 8 C 0.315 3.685 9 N -0.671 5.671 10 C 0.125 3.875 11 H 0.102 0.898 12 C -0.145 4.145 13 C -0.114 4.114 14 H 0.089 0.911 15 C 0.139 3.861 16 N -0.374 5.374 17 C 0.053 3.947 18 C -0.295 4.295 19 C 0.029 3.971 20 N -0.335 5.335 21 C -0.116 4.116 22 S 0.101 5.899 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.398 0.602 28 H -0.321 1.321 29 H -0.273 1.273 30 H 0.421 0.579 31 H 0.101 0.899 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.126 0.874 35 H 0.204 0.796 36 H 0.159 0.841 37 H 0.195 0.805 38 H 0.089 0.911 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.288 1.577 1.518 3.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.376 4.376 3 C -0.041 4.041 4 C -0.156 4.156 5 O -0.356 6.356 6 Si 0.684 3.316 7 N -0.285 5.285 8 C -0.056 4.056 9 N -0.311 5.311 10 C 0.020 3.980 11 H 0.120 0.880 12 C -0.184 4.184 13 C -0.134 4.134 14 H 0.107 0.893 15 C 0.018 3.982 16 N -0.157 5.157 17 C -0.094 4.094 18 C -0.324 4.324 19 C -0.156 4.156 20 N -0.158 5.158 21 C -0.155 4.155 22 S 0.350 5.650 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.107 0.893 26 H 0.120 0.880 27 H 0.250 0.750 28 H -0.250 1.250 29 H -0.200 1.200 30 H 0.261 0.739 31 H 0.119 0.881 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.144 0.856 35 H 0.221 0.779 36 H 0.176 0.824 37 H 0.212 0.788 38 H 0.108 0.892 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.460 0.708 2.151 4.135 hybrid contribution -1.005 1.004 -1.283 1.914 sum 2.455 1.712 0.868 3.116 Atomic orbital electron populations 1.20066 0.85857 1.02879 1.02396 1.25372 1.02187 0.93147 1.16936 1.19145 0.86853 0.95929 1.02161 1.24061 0.92207 0.96742 1.02596 1.86543 1.32942 1.36678 1.79483 0.93048 0.86499 0.73652 0.78425 1.65653 1.16867 1.17172 1.28777 1.23513 0.92968 0.91086 0.98058 1.44051 1.00851 1.07199 1.78989 1.22687 0.98839 0.78588 0.97890 0.88025 1.23650 0.98998 0.98958 0.96824 1.22536 0.94652 0.98832 0.97361 0.89303 1.22016 0.97750 0.86972 0.91415 1.48960 1.50198 1.07195 1.09341 1.23146 0.99689 1.01287 0.85242 1.21863 1.14963 0.93106 1.02450 1.24305 0.99093 1.01445 0.90772 1.77255 1.24317 0.89470 1.24725 1.23318 0.95129 0.98358 0.98673 1.83878 0.96521 1.10238 1.74380 0.91715 0.91708 0.89292 0.87997 0.75031 1.24996 1.20010 0.73867 0.88056 0.92411 0.88865 0.85619 0.77943 0.82372 0.78810 0.89233 0.86474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.21 8.96 71.24 0.64 0.43 16 2 C -0.25 -1.80 6.50 24.58 0.16 -1.64 16 3 C 0.09 0.66 5.95 41.40 0.25 0.91 16 4 C -0.04 -0.13 2.81 71.24 0.20 0.07 16 5 O -0.55 -1.15 9.86 -148.98 -1.47 -2.62 16 6 Si 0.78 2.50 32.08 68.60 2.20 4.70 16 7 N -0.56 -3.90 8.94 -189.87 -1.70 -5.60 16 8 C 0.32 1.30 8.24 179.32 1.48 2.77 16 9 N -0.67 1.66 5.51 -327.90 -1.81 -0.15 16 10 C 0.13 -0.63 4.23 45.52 0.19 -0.44 16 11 H 0.10 -0.33 7.06 -2.39 -0.02 -0.35 16 12 C -0.14 0.69 7.43 31.12 0.23 0.92 16 13 C -0.11 0.64 3.87 -10.27 -0.04 0.60 16 14 H 0.09 -0.04 7.96 -2.39 -0.02 -0.06 16 15 C 0.14 -0.84 6.35 86.38 0.55 -0.29 16 16 N -0.37 -0.40 3.68 -348.07 -1.28 -1.68 16 17 C 0.05 -0.05 11.45 83.54 0.96 0.91 16 18 C -0.29 -0.47 10.80 21.99 0.24 -0.23 16 19 C 0.03 0.12 12.03 85.24 1.03 1.15 16 20 N -0.34 -2.31 12.26 -57.02 -0.70 -3.01 16 21 C -0.12 1.06 7.39 31.12 0.23 1.29 16 22 S 0.10 0.44 21.69 -56.49 -1.23 -0.79 16 23 H 0.06 0.32 8.14 -2.38 -0.02 0.30 16 24 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 25 H 0.09 0.26 6.62 -2.39 -0.02 0.25 16 26 H 0.10 -0.14 7.96 -2.39 -0.02 -0.16 16 27 H 0.40 -2.57 8.74 -74.06 -0.65 -3.22 16 28 H -0.32 -4.20 7.11 99.48 0.71 -3.50 16 29 H -0.27 -1.20 7.11 99.48 0.71 -0.49 16 30 H 0.42 -2.38 8.85 -92.70 -0.82 -3.20 16 31 H 0.10 -0.67 7.90 -2.38 -0.02 -0.69 16 32 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 33 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 34 H 0.13 -1.49 7.77 -2.39 -0.02 -1.51 16 35 H 0.20 -1.74 8.06 -2.91 -0.02 -1.76 16 36 H 0.16 -0.31 8.06 -2.91 -0.02 -0.33 16 37 H 0.20 -0.11 8.06 -2.91 -0.02 -0.13 16 38 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 39 H 0.12 -1.53 8.08 -2.39 -0.02 -1.55 16 Total: 0.00 -20.30 340.07 -0.22 -20.52 By element: Atomic # 1 Polarization: -17.48 SS G_CDS: -0.35 Total: -17.83 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 6.10 Total: 6.45 kcal Atomic # 7 Polarization: -4.96 SS G_CDS: -5.49 Total: -10.44 kcal Atomic # 8 Polarization: -1.15 SS G_CDS: -1.47 Total: -2.62 kcal Atomic # 14 Polarization: 2.50 SS G_CDS: 2.20 Total: 4.70 kcal Atomic # 16 Polarization: 0.44 SS G_CDS: -1.23 Total: -0.79 kcal Total: -20.30 -0.22 -20.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687798_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.580 kcal (2) G-P(sol) polarization free energy of solvation -20.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds