Wall clock time and date at job start Mon Mar 8 2021 07:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46915 * 2 1 4 4 C 1.50699 * 109.47189 * 239.99907 * 2 1 3 5 5 C 1.37980 * 120.32787 * 119.97652 * 4 2 1 6 6 N 1.32003 * 120.90219 * 179.75015 * 5 4 2 7 7 C 1.32336 * 121.64743 * 0.55966 * 6 5 4 8 8 N 1.39138 * 119.72215 * 179.71555 * 7 6 5 9 9 C 1.46502 * 119.99903 * 359.72813 * 8 7 6 10 10 H 1.09001 * 112.84908 * 336.20049 * 9 8 7 11 11 C 1.53783 * 113.69001 * 107.46694 * 9 8 7 12 12 C 1.53780 * 87.08051 * 139.99344 * 11 9 8 13 13 H 1.08998 * 113.68946 * 89.12675 * 12 11 9 14 14 C 1.53001 * 113.61466 * 220.01719 * 12 11 9 15 15 N 1.46499 * 109.47001 * 272.49900 * 14 12 11 16 16 C 1.34954 * 126.03713 * 124.99785 * 15 14 12 17 17 C 1.35315 * 107.74451 * 180.02562 * 16 15 14 18 18 C 1.39867 * 107.92134 * 0.02562 * 17 16 15 19 19 N 1.30834 * 108.20347 * 359.97438 * 18 17 16 20 20 C 1.53774 * 87.08294 * 334.56546 * 12 11 9 21 21 C 1.39344 * 120.56000 * 359.44243 * 7 6 5 22 22 F 1.35097 * 120.47208 * 180.25304 * 21 7 6 23 23 C 1.38446 * 119.05705 * 0.27077 * 21 7 6 24 24 H 0.96704 * 113.99873 * 299.99894 * 1 2 3 25 25 H 1.08998 * 109.47151 * 119.99512 * 2 1 3 26 26 H 1.48498 * 109.99660 * 299.99759 * 3 2 1 27 27 H 1.48499 * 110.00225 * 61.31837 * 3 2 1 28 28 H 1.08005 * 119.54700 * 0.02562 * 5 4 2 29 29 H 0.96999 * 120.00111 * 179.73156 * 8 7 6 30 30 H 1.08997 * 113.61582 * 25.44424 * 11 9 8 31 31 H 1.09003 * 113.61225 * 254.53711 * 11 9 8 32 32 H 1.08993 * 109.47166 * 152.49536 * 14 12 11 33 33 H 1.08999 * 109.46588 * 32.49458 * 14 12 11 34 34 H 1.08001 * 126.12517 * 359.75938 * 16 15 14 35 35 H 1.07997 * 126.03615 * 179.97438 * 17 16 15 36 36 H 1.08000 * 125.89932 * 180.02562 * 18 17 16 37 37 H 1.08998 * 113.61937 * 139.97791 * 20 12 11 38 38 H 1.08999 * 113.62064 * 270.88962 * 20 12 11 39 39 H 1.07999 * 120.75446 * 180.02562 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7247 -0.0462 -2.1434 6 7 3.1749 -0.6589 -3.2224 7 6 2.8780 -1.9229 -3.4781 8 7 3.3696 -2.5275 -4.6308 9 6 4.2072 -1.7633 -5.5585 10 1 4.0466 -0.6876 -5.4859 11 6 5.6905 -2.1680 -5.5284 12 6 5.6830 -2.0120 -7.0583 13 1 5.9258 -1.0049 -7.3970 14 6 6.4820 -3.0933 -7.7885 15 7 7.8829 -2.6776 -7.8942 16 6 8.9539 -3.3813 -7.4712 17 6 10.0610 -2.6550 -7.7503 18 6 9.6525 -1.4666 -8.3644 19 7 8.3471 -1.4792 -8.4514 20 6 4.1726 -2.2953 -7.0010 21 6 2.0818 -2.6552 -2.5998 22 9 1.7839 -3.9470 -2.8600 23 6 1.6000 -2.0401 -1.4569 24 1 -0.3933 0.4417 0.7651 25 1 1.7924 -0.5137 0.8900 26 1 1.5615 2.4678 -1.2085 27 1 1.5879 2.4586 1.2242 28 1 2.9844 0.9878 -1.9704 29 1 3.1577 -3.4549 -4.8203 30 1 5.8570 -3.1922 -5.1948 31 1 6.3297 -1.4467 -5.0192 32 1 6.0696 -3.2379 -8.7870 33 1 6.4215 -4.0282 -7.2315 34 1 8.9312 -4.3487 -6.9915 35 1 11.0798 -2.9419 -7.5360 36 1 10.3025 -0.6756 -8.7082 37 1 3.5862 -1.6768 -7.6805 38 1 3.9240 -3.3543 -7.0698 39 1 0.9809 -2.5820 -0.7573 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14687798_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:38:13 Heat of formation + Delta-G solvation = 83.367724 kcal Electronic energy + Delta-G solvation = -23921.770979 eV Core-core repulsion = 20169.691847 eV Total energy + Delta-G solvation = -3752.079132 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.128 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.97475 -42.04406 -41.46602 -40.21231 -38.01881 -35.95716 -33.89128 -33.22610 -31.42653 -30.90943 -28.49343 -26.79057 -26.44629 -25.32576 -23.55810 -22.72478 -22.01755 -21.49522 -20.61487 -19.16156 -18.74105 -18.43157 -18.05787 -18.04495 -16.95691 -16.62152 -16.58607 -16.09333 -15.91671 -15.75654 -15.13232 -15.01113 -14.98102 -14.52871 -14.22151 -14.17286 -14.04879 -13.83614 -13.65899 -13.48665 -13.32776 -13.03813 -12.57583 -12.24747 -12.07438 -11.90142 -11.56285 -11.48578 -11.17431 -10.74160 -10.73677 -10.43726 -10.31018 -9.46446 -8.77033 -4.91674 -0.11383 0.08639 1.02138 1.29130 1.61037 1.67205 1.96518 1.97423 1.98388 2.48159 3.00226 3.20175 3.37014 3.42515 3.52017 3.56358 3.63657 3.80422 3.84414 3.95680 4.05762 4.09824 4.20782 4.34483 4.36781 4.45938 4.51070 4.63797 4.67840 4.69524 4.76830 4.83022 4.92760 4.97230 5.00407 5.05191 5.17677 5.22893 5.46483 5.77458 5.96219 6.18552 6.20728 6.60294 6.80249 6.94447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.069 4.069 3 Si 0.757 3.243 4 C -0.167 4.167 5 C 0.145 3.855 6 N -0.528 5.528 7 C 0.380 3.620 8 N -0.700 5.700 9 C 0.136 3.864 10 H 0.103 0.897 11 C -0.139 4.139 12 C -0.112 4.112 13 H 0.085 0.915 14 C 0.140 3.860 15 N -0.375 5.375 16 C 0.053 3.947 17 C -0.293 4.293 18 C 0.029 3.971 19 N -0.337 5.337 20 C -0.126 4.126 21 C -0.035 4.035 22 F -0.138 7.138 23 C -0.042 4.042 24 H 0.397 0.603 25 H 0.102 0.898 26 H -0.296 1.296 27 H -0.281 1.281 28 H 0.179 0.821 29 H 0.418 0.582 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.204 0.796 35 H 0.160 0.840 36 H 0.196 0.804 37 H 0.080 0.920 38 H 0.110 0.890 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.955 -2.643 2.963 4.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.178 4.178 3 Si 0.662 3.338 4 C -0.172 4.172 5 C -0.012 4.012 6 N -0.245 5.245 7 C 0.142 3.858 8 N -0.333 5.333 9 C 0.031 3.969 10 H 0.121 0.879 11 C -0.178 4.178 12 C -0.132 4.132 13 H 0.104 0.896 14 C 0.020 3.980 15 N -0.157 5.157 16 C -0.094 4.094 17 C -0.322 4.322 18 C -0.156 4.156 19 N -0.159 5.159 20 C -0.165 4.165 21 C -0.061 4.061 22 F -0.117 7.117 23 C -0.068 4.068 24 H 0.248 0.752 25 H 0.120 0.880 26 H -0.223 1.223 27 H -0.208 1.208 28 H 0.196 0.804 29 H 0.257 0.743 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.143 0.857 34 H 0.221 0.779 35 H 0.178 0.822 36 H 0.213 0.787 37 H 0.099 0.901 38 H 0.128 0.872 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.267 -1.043 1.313 2.102 hybrid contribution -1.065 -1.395 1.176 2.112 sum 0.203 -2.438 2.490 3.491 Atomic orbital electron populations 1.86541 1.18483 1.80702 1.51249 1.24742 0.84055 1.11453 0.97584 0.94293 0.90335 0.72190 0.77022 1.20033 1.03543 0.94185 0.99488 1.22603 0.91761 0.99649 0.87207 1.67332 1.27151 1.07825 1.22211 1.18616 0.90148 0.89187 0.87883 1.44604 1.54136 1.14614 1.19916 1.22412 0.89279 0.97047 0.88187 0.87857 1.23535 0.96547 1.02512 0.95175 1.22501 0.95526 0.99654 0.95532 0.89619 1.21988 0.75186 0.98140 1.02724 1.48947 1.07302 1.13882 1.45600 1.23163 0.86683 0.99787 0.99764 1.21862 1.00613 0.97153 1.12593 1.24320 0.92349 0.99640 0.99278 1.77265 1.13318 1.03794 1.21568 1.23358 0.94490 1.03507 0.95127 1.18083 1.07710 0.80937 0.99400 1.91465 1.92333 1.33831 1.94068 1.21443 0.95804 0.94746 0.94786 0.75213 0.88024 1.22331 1.20776 0.80447 0.74299 0.88573 0.92672 0.89166 0.85713 0.77903 0.82189 0.78720 0.90090 0.87168 0.82581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.26 12.75 -148.98 -1.90 -2.16 16 2 C -0.07 0.16 2.83 71.24 0.20 0.36 16 3 Si 0.76 -2.65 29.82 68.60 2.05 -0.61 16 4 C -0.17 -0.29 5.43 -19.77 -0.11 -0.40 16 5 C 0.14 0.35 9.84 84.61 0.83 1.18 16 6 N -0.53 -2.86 9.13 -193.04 -1.76 -4.63 16 7 C 0.38 1.72 7.49 133.09 1.00 2.72 16 8 N -0.70 -0.01 5.51 -321.78 -1.77 -1.79 16 9 C 0.14 -0.15 4.27 45.52 0.19 0.04 16 10 H 0.10 0.29 7.41 -2.39 -0.02 0.27 16 11 C -0.14 0.27 7.43 31.12 0.23 0.50 16 12 C -0.11 0.29 3.87 -10.27 -0.04 0.25 16 13 H 0.09 0.24 7.96 -2.39 -0.02 0.22 16 14 C 0.14 -0.54 6.35 86.38 0.55 0.01 16 15 N -0.37 -0.97 3.68 -348.06 -1.28 -2.25 16 16 C 0.05 0.00 11.45 83.54 0.96 0.95 16 17 C -0.29 -0.62 10.80 21.99 0.24 -0.39 16 18 C 0.03 0.15 12.03 85.24 1.02 1.17 16 19 N -0.34 -2.79 12.27 -57.03 -0.70 -3.49 16 20 C -0.13 0.66 7.39 31.12 0.23 0.89 16 21 C -0.03 -0.16 7.35 22.59 0.17 0.00 16 22 F -0.14 -0.69 16.65 44.97 0.75 0.06 16 23 C -0.04 -0.13 9.75 22.48 0.22 0.09 16 24 H 0.40 -3.01 8.74 -74.05 -0.65 -3.66 16 25 H 0.10 -0.69 7.96 -2.39 -0.02 -0.71 16 26 H -0.30 -1.18 7.11 99.48 0.71 -0.47 16 27 H -0.28 -0.13 7.11 99.48 0.71 0.58 16 28 H 0.18 -0.39 4.88 -2.91 -0.01 -0.40 16 29 H 0.42 -1.33 8.20 -92.71 -0.76 -2.09 16 30 H 0.10 -0.41 7.90 -2.39 -0.02 -0.43 16 31 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 33 H 0.12 -1.22 7.77 -2.39 -0.02 -1.24 16 34 H 0.20 -1.60 8.06 -2.91 -0.02 -1.62 16 35 H 0.16 -0.29 8.06 -2.91 -0.02 -0.31 16 36 H 0.20 0.01 8.06 -2.91 -0.02 -0.02 16 37 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 38 H 0.11 -1.01 8.08 -2.39 -0.02 -1.03 16 39 H 0.16 0.10 8.06 -2.91 -0.02 0.07 16 Total: 0.00 -19.78 335.83 0.80 -18.98 By element: Atomic # 1 Polarization: -11.24 SS G_CDS: -0.27 Total: -11.51 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 5.69 Total: 7.39 kcal Atomic # 7 Polarization: -6.63 SS G_CDS: -5.52 Total: -12.15 kcal Atomic # 8 Polarization: -0.26 SS G_CDS: -1.90 Total: -2.16 kcal Atomic # 9 Polarization: -0.69 SS G_CDS: 0.75 Total: 0.06 kcal Atomic # 14 Polarization: -2.65 SS G_CDS: 2.05 Total: -0.61 kcal Total: -19.78 0.80 -18.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687798_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.352 kcal (2) G-P(sol) polarization free energy of solvation -19.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds