Wall clock time and date at job start Mon Mar 8 2021 07:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.38021 * 120.33221 * 244.99625 * 4 2 1 6 6 N 1.31974 * 120.85528 * 180.02562 * 5 4 2 7 7 C 1.32398 * 121.61975 * 0.02562 * 6 5 4 8 8 N 1.39005 * 119.70349 * 180.02562 * 7 6 5 9 9 C 1.46498 * 119.99988 * 180.02562 * 8 7 6 10 10 H 1.09000 * 112.84740 * 334.66660 * 9 8 7 11 11 C 1.53782 * 113.61422 * 105.86441 * 9 8 7 12 12 C 1.54043 * 86.98769 * 89.15840 * 11 9 8 13 13 H 1.09005 * 113.69438 * 270.87493 * 12 11 9 14 14 C 1.53004 * 113.61851 * 139.97512 * 12 11 9 15 15 N 1.46505 * 109.46753 * 87.51010 * 14 12 11 16 16 C 1.34946 * 126.03681 * 124.71638 * 15 14 12 17 17 C 1.35320 * 107.74223 * 179.83626 * 16 15 14 18 18 C 1.39864 * 107.92306 * 0.42116 * 17 16 15 19 19 N 1.30837 * 108.20022 * 359.73904 * 18 17 16 20 20 C 1.53779 * 113.61613 * 203.46872 * 9 8 7 21 21 C 1.39133 * 120.59138 * 359.97438 * 7 6 5 22 22 C 1.38298 * 119.09613 * 359.72411 * 21 7 6 23 23 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 24 24 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 25 25 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 26 26 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 27 27 H 1.08006 * 119.57433 * 359.97438 * 5 4 2 28 28 H 0.97000 * 120.00018 * 359.97438 * 8 7 6 29 29 H 1.09000 * 113.61249 * 203.66660 * 11 9 8 30 30 H 1.09004 * 113.61144 * 334.56386 * 11 9 8 31 31 H 1.09004 * 109.47259 * 207.50412 * 14 12 11 32 32 H 1.08997 * 109.47404 * 327.50702 * 14 12 11 33 33 H 1.07995 * 126.12702 * 0.02562 * 16 15 14 34 34 H 1.08003 * 126.03736 * 180.16618 * 17 16 15 35 35 H 1.07995 * 125.90403 * 179.75302 * 18 17 16 36 36 H 1.09003 * 113.61357 * 25.42774 * 20 9 8 37 37 H 1.08997 * 113.61773 * 156.25184 * 20 9 8 38 38 H 1.08002 * 120.45311 * 180.02562 * 21 7 6 39 39 H 1.08006 * 120.74968 * 180.30178 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.6382 -0.0201 2.1942 6 7 3.0832 -0.6320 3.2756 7 6 2.8721 -1.9230 3.4791 8 7 3.3584 -2.5271 4.6327 9 6 3.1290 -3.9554 4.8642 10 1 2.2463 -4.3315 4.3469 11 6 4.3818 -4.8223 4.6551 12 6 4.6997 -4.5778 6.1425 13 1 5.3000 -3.6857 6.3212 14 6 5.2417 -5.8131 6.8645 15 7 6.6973 -5.8704 6.7085 16 6 7.6007 -5.9431 7.7083 17 6 8.8324 -5.9808 7.1492 18 6 8.6769 -5.9198 5.7606 19 7 7.3974 -5.8535 5.4952 20 6 3.1917 -4.3570 6.3473 21 6 2.1668 -2.6804 2.5491 22 6 1.6828 -2.0651 1.4090 23 1 -0.3934 0.4418 0.7650 24 1 1.7924 -0.5139 -0.8899 25 1 1.5616 2.4678 -1.2086 26 1 1.5878 2.4586 1.2241 27 1 2.8305 1.0344 2.0612 28 1 3.8503 -2.0031 5.2841 29 1 4.1584 -5.8633 4.4217 30 1 5.1091 -4.3813 3.9735 31 1 4.9920 -5.7535 7.9239 32 1 4.7947 -6.7100 6.4358 33 1 7.3800 -5.9697 8.7651 34 1 9.7702 -6.0427 7.6814 35 1 9.4749 -5.9263 5.0330 36 1 2.9590 -3.5405 7.0309 37 1 2.6423 -5.2702 6.5760 38 1 1.9955 -3.7333 2.7175 39 1 1.1277 -2.6264 0.6719 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14687810_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:42:36 Heat of formation + Delta-G solvation = 127.426172 kcal Electronic energy + Delta-G solvation = -21683.523084 eV Core-core repulsion = 18402.808445 eV Total energy + Delta-G solvation = -3280.714639 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.07561 -41.50249 -40.33681 -37.97469 -35.71624 -33.87316 -33.27172 -31.24087 -30.85023 -28.59757 -26.88501 -26.31370 -25.01909 -24.04128 -22.65310 -21.92796 -21.54916 -20.42784 -18.91833 -18.50761 -18.14481 -17.45651 -16.62939 -16.52364 -16.33229 -16.18376 -15.68499 -15.41864 -15.29655 -14.86102 -14.80616 -14.40907 -14.25824 -14.00782 -13.82450 -13.65685 -13.52362 -13.24872 -13.01984 -12.45805 -12.28248 -11.96233 -11.84243 -11.56876 -11.36536 -11.08234 -10.71846 -10.51210 -10.34105 -10.28904 -9.47521 -8.71566 -4.93302 0.26191 0.44353 1.01705 1.32215 1.58399 1.60979 1.97716 2.00175 2.00445 2.84803 3.18024 3.29336 3.42209 3.49233 3.60570 3.61831 3.79310 3.90591 3.94085 3.97376 4.05556 4.09505 4.20452 4.26659 4.35362 4.44661 4.56143 4.57141 4.61121 4.72506 4.76454 4.85910 4.91865 5.02792 5.03331 5.08999 5.15259 5.34226 5.54617 5.78020 6.00755 6.10424 6.43745 6.51310 6.83371 7.16989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.059 4.059 3 Si 0.680 3.320 4 C -0.233 4.233 5 C 0.155 3.845 6 N -0.540 5.540 7 C 0.411 3.589 8 N -0.704 5.704 9 C 0.128 3.872 10 H 0.099 0.901 11 C -0.139 4.139 12 C -0.120 4.120 13 H 0.095 0.905 14 C 0.142 3.858 15 N -0.372 5.372 16 C 0.050 3.950 17 C -0.274 4.274 18 C 0.042 3.958 19 N -0.289 5.289 20 C -0.138 4.138 21 C -0.237 4.237 22 C -0.005 4.005 23 H 0.375 0.625 24 H 0.116 0.884 25 H -0.256 1.256 26 H -0.258 1.258 27 H 0.155 0.845 28 H 0.406 0.594 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.172 0.828 34 H 0.147 0.853 35 H 0.182 0.818 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.134 0.866 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.569 -2.307 3.344 4.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.338 6.338 2 C -0.170 4.170 3 Si 0.581 3.419 4 C -0.238 4.238 5 C -0.003 4.003 6 N -0.257 5.257 7 C 0.175 3.825 8 N -0.336 5.336 9 C 0.021 3.979 10 H 0.117 0.883 11 C -0.178 4.178 12 C -0.139 4.139 13 H 0.113 0.887 14 C 0.021 3.979 15 N -0.155 5.155 16 C -0.096 4.096 17 C -0.304 4.304 18 C -0.145 4.145 19 N -0.111 5.111 20 C -0.177 4.177 21 C -0.262 4.262 22 C -0.031 4.031 23 H 0.222 0.778 24 H 0.134 0.866 25 H -0.181 1.181 26 H -0.183 1.183 27 H 0.172 0.828 28 H 0.242 0.758 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.189 0.811 34 H 0.164 0.836 35 H 0.199 0.801 36 H 0.098 0.902 37 H 0.120 0.880 38 H 0.152 0.848 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.184 -1.436 2.542 2.925 hybrid contribution -0.544 -0.553 1.002 1.267 sum -0.728 -1.989 3.544 4.128 Atomic orbital electron populations 1.86595 1.17988 1.79932 1.49302 1.24758 0.83660 1.10588 0.97993 0.95076 0.91720 0.74718 0.80380 1.20922 1.06976 0.95992 0.99934 1.22266 0.91383 0.99030 0.87616 1.67149 1.25802 1.09016 1.23707 1.18359 0.89027 0.88420 0.86655 1.44141 1.60330 1.08220 1.20881 1.21853 0.98748 0.80337 0.96964 0.88304 1.23547 0.97702 1.00510 0.96020 1.22908 0.95992 0.97923 0.97053 0.88672 1.21786 0.74938 0.99267 1.01943 1.48738 1.06309 1.56471 1.03960 1.22605 0.89811 1.02032 0.95194 1.21560 0.97994 1.16566 0.94269 1.23947 0.94274 0.99870 0.96367 1.77385 1.05581 1.23834 1.04273 1.23356 0.95270 1.02831 0.96228 1.21495 1.06410 1.01475 0.96798 1.21204 0.93135 0.93402 0.95376 0.77756 0.86578 1.18056 1.18343 0.82812 0.75819 0.88916 0.90325 0.88464 0.89472 0.81081 0.83568 0.80110 0.90210 0.88038 0.84778 0.84648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.77 12.84 -35.23 -0.45 -1.22 16 2 C -0.06 0.00 2.82 36.01 0.10 0.10 16 3 Si 0.68 -0.40 29.91 -169.99 -5.08 -5.49 16 4 C -0.23 -0.21 5.36 -104.46 -0.56 -0.77 16 5 C 0.15 0.25 9.84 -17.57 -0.17 0.08 16 6 N -0.54 -1.70 10.39 -12.44 -0.13 -1.83 16 7 C 0.41 0.80 7.65 -155.02 -1.19 -0.38 16 8 N -0.70 0.04 5.44 -53.14 -0.29 -0.25 16 9 C 0.13 -0.27 4.07 -67.12 -0.27 -0.54 16 10 H 0.10 -0.26 6.17 -51.93 -0.32 -0.58 16 11 C -0.14 0.19 7.45 -25.78 -0.19 0.00 16 12 C -0.12 0.27 3.72 -89.67 -0.33 -0.07 16 13 H 0.10 -0.06 8.14 -51.93 -0.42 -0.48 16 14 C 0.14 -0.32 6.35 -4.04 -0.03 -0.34 16 15 N -0.37 -0.33 3.68 -61.36 -0.23 -0.56 16 16 C 0.05 0.00 11.45 -17.22 -0.20 -0.19 16 17 C -0.27 -0.25 10.80 -40.01 -0.43 -0.68 16 18 C 0.04 0.08 12.03 -17.37 -0.21 -0.13 16 19 N -0.29 -0.91 12.42 30.62 0.38 -0.53 16 20 C -0.14 0.51 7.38 -25.92 -0.19 0.32 16 21 C -0.24 -0.21 9.28 -39.23 -0.36 -0.58 16 22 C -0.01 0.00 9.83 -39.32 -0.39 -0.39 16 23 H 0.37 -0.45 8.70 45.56 0.40 -0.06 16 24 H 0.12 -0.08 7.96 -51.93 -0.41 -0.49 16 25 H -0.26 -0.67 7.11 56.52 0.40 -0.27 16 26 H -0.26 -0.33 7.01 56.52 0.40 0.07 16 27 H 0.16 -0.03 4.85 -52.48 -0.25 -0.28 16 28 H 0.41 -0.07 8.83 -40.82 -0.36 -0.43 16 29 H 0.09 -0.17 7.90 -51.93 -0.41 -0.58 16 30 H 0.08 0.10 8.14 -51.93 -0.42 -0.33 16 31 H 0.10 -0.43 8.07 -51.93 -0.42 -0.85 16 32 H 0.09 -0.23 7.85 -51.93 -0.41 -0.64 16 33 H 0.17 -0.54 8.06 -52.49 -0.42 -0.97 16 34 H 0.15 -0.12 8.06 -52.48 -0.42 -0.55 16 35 H 0.18 -0.10 8.06 -52.49 -0.42 -0.53 16 36 H 0.08 -0.27 8.14 -51.93 -0.42 -0.70 16 37 H 0.10 -0.51 8.10 -51.93 -0.42 -0.93 16 38 H 0.13 -0.12 6.06 -52.49 -0.32 -0.44 16 39 H 0.14 -0.05 8.06 -52.48 -0.42 -0.47 16 LS Contribution 327.95 15.07 4.94 4.94 Total: 0.00 -7.63 327.95 -10.37 -18.00 By element: Atomic # 1 Polarization: -4.40 SS G_CDS: -5.09 Total: -9.49 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -4.42 Total: -3.58 kcal Atomic # 7 Polarization: -2.90 SS G_CDS: -0.26 Total: -3.16 kcal Atomic # 8 Polarization: -0.77 SS G_CDS: -0.45 Total: -1.22 kcal Atomic # 14 Polarization: -0.40 SS G_CDS: -5.08 Total: -5.49 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -7.63 -10.37 -18.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687810_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.429 kcal (2) G-P(sol) polarization free energy of solvation -7.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds