Wall clock time and date at job start Mon Mar 8 2021 07:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.38021 * 120.33221 * 244.99625 * 4 2 1 6 6 N 1.31974 * 120.85528 * 180.02562 * 5 4 2 7 7 C 1.32398 * 121.61975 * 0.02562 * 6 5 4 8 8 N 1.39005 * 119.70349 * 180.02562 * 7 6 5 9 9 C 1.46498 * 119.99988 * 180.02562 * 8 7 6 10 10 H 1.09000 * 112.84740 * 334.66660 * 9 8 7 11 11 C 1.53782 * 113.61422 * 105.86441 * 9 8 7 12 12 C 1.54043 * 86.98769 * 89.15840 * 11 9 8 13 13 H 1.09005 * 113.69438 * 270.87493 * 12 11 9 14 14 C 1.53004 * 113.61851 * 139.97512 * 12 11 9 15 15 N 1.46505 * 109.46753 * 87.51010 * 14 12 11 16 16 C 1.34946 * 126.03681 * 124.71638 * 15 14 12 17 17 C 1.35320 * 107.74223 * 179.83626 * 16 15 14 18 18 C 1.39864 * 107.92306 * 0.42116 * 17 16 15 19 19 N 1.30837 * 108.20022 * 359.73904 * 18 17 16 20 20 C 1.53779 * 113.61613 * 203.46872 * 9 8 7 21 21 C 1.39133 * 120.59138 * 359.97438 * 7 6 5 22 22 C 1.38298 * 119.09613 * 359.72411 * 21 7 6 23 23 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 24 24 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 25 25 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 26 26 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 27 27 H 1.08006 * 119.57433 * 359.97438 * 5 4 2 28 28 H 0.97000 * 120.00018 * 359.97438 * 8 7 6 29 29 H 1.09000 * 113.61249 * 203.66660 * 11 9 8 30 30 H 1.09004 * 113.61144 * 334.56386 * 11 9 8 31 31 H 1.09004 * 109.47259 * 207.50412 * 14 12 11 32 32 H 1.08997 * 109.47404 * 327.50702 * 14 12 11 33 33 H 1.07995 * 126.12702 * 0.02562 * 16 15 14 34 34 H 1.08003 * 126.03736 * 180.16618 * 17 16 15 35 35 H 1.07995 * 125.90403 * 179.75302 * 18 17 16 36 36 H 1.09003 * 113.61357 * 25.42774 * 20 9 8 37 37 H 1.08997 * 113.61773 * 156.25184 * 20 9 8 38 38 H 1.08002 * 120.45311 * 180.02562 * 21 7 6 39 39 H 1.08006 * 120.74968 * 180.30178 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.6382 -0.0201 2.1942 6 7 3.0832 -0.6320 3.2756 7 6 2.8721 -1.9230 3.4791 8 7 3.3584 -2.5271 4.6327 9 6 3.1290 -3.9554 4.8642 10 1 2.2463 -4.3315 4.3469 11 6 4.3818 -4.8223 4.6551 12 6 4.6997 -4.5778 6.1425 13 1 5.3000 -3.6857 6.3212 14 6 5.2417 -5.8131 6.8645 15 7 6.6973 -5.8704 6.7085 16 6 7.6007 -5.9431 7.7083 17 6 8.8324 -5.9808 7.1492 18 6 8.6769 -5.9198 5.7606 19 7 7.3974 -5.8535 5.4952 20 6 3.1917 -4.3570 6.3473 21 6 2.1668 -2.6804 2.5491 22 6 1.6828 -2.0651 1.4090 23 1 -0.3934 0.4418 0.7650 24 1 1.7924 -0.5139 -0.8899 25 1 1.5616 2.4678 -1.2086 26 1 1.5878 2.4586 1.2241 27 1 2.8305 1.0344 2.0612 28 1 3.8503 -2.0031 5.2841 29 1 4.1584 -5.8633 4.4217 30 1 5.1091 -4.3813 3.9735 31 1 4.9920 -5.7535 7.9239 32 1 4.7947 -6.7100 6.4358 33 1 7.3800 -5.9697 8.7651 34 1 9.7702 -6.0427 7.6814 35 1 9.4749 -5.9263 5.0330 36 1 2.9590 -3.5405 7.0309 37 1 2.6423 -5.2702 6.5760 38 1 1.9955 -3.7333 2.7175 39 1 1.1277 -2.6264 0.6719 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14687810_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:42:35 Heat of formation + Delta-G solvation = 129.399147 kcal Electronic energy + Delta-G solvation = -21683.437529 eV Core-core repulsion = 18402.808445 eV Total energy + Delta-G solvation = -3280.629084 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.05557 -41.52789 -40.24592 -38.02517 -35.69031 -33.85359 -33.32196 -31.26375 -30.86182 -28.52270 -26.71563 -26.32288 -25.02112 -24.00699 -22.67777 -21.91472 -21.53053 -20.30408 -18.91211 -18.55771 -18.09314 -17.47051 -16.57448 -16.47404 -16.31296 -16.21132 -15.64930 -15.41002 -15.29178 -14.82043 -14.77735 -14.38136 -14.31524 -14.04312 -13.71462 -13.59250 -13.38013 -13.29878 -12.86889 -12.48761 -12.14669 -12.06191 -11.78217 -11.57969 -11.21403 -11.06063 -10.77750 -10.55636 -10.42523 -10.31731 -9.48010 -8.73129 -4.92053 0.19731 0.37704 1.01617 1.32290 1.58583 1.68984 1.94279 1.95885 2.03799 2.78349 3.36087 3.44350 3.47199 3.57724 3.67922 3.75369 3.78202 3.97115 4.03035 4.05209 4.08654 4.23961 4.30846 4.36905 4.43198 4.58255 4.66345 4.74904 4.75855 4.78969 4.83307 4.92178 4.98411 5.06751 5.09028 5.16369 5.20483 5.32301 5.55216 5.76204 6.03146 6.19967 6.48288 6.50017 6.79924 7.11218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.062 4.062 3 Si 0.755 3.245 4 C -0.233 4.233 5 C 0.143 3.857 6 N -0.567 5.567 7 C 0.396 3.604 8 N -0.703 5.703 9 C 0.124 3.876 10 H 0.108 0.892 11 C -0.138 4.138 12 C -0.114 4.114 13 H 0.075 0.925 14 C 0.135 3.865 15 N -0.376 5.376 16 C 0.050 3.950 17 C -0.294 4.294 18 C 0.024 3.976 19 N -0.328 5.328 20 C -0.120 4.120 21 C -0.240 4.240 22 C -0.012 4.012 23 H 0.385 0.615 24 H 0.125 0.875 25 H -0.299 1.299 26 H -0.283 1.283 27 H 0.166 0.834 28 H 0.404 0.596 29 H 0.099 0.901 30 H 0.046 0.954 31 H 0.126 0.874 32 H 0.094 0.906 33 H 0.205 0.795 34 H 0.159 0.841 35 H 0.193 0.807 36 H 0.082 0.918 37 H 0.125 0.875 38 H 0.151 0.849 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.086 -3.200 4.434 5.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.172 4.172 3 Si 0.660 3.340 4 C -0.238 4.238 5 C -0.014 4.014 6 N -0.285 5.285 7 C 0.160 3.840 8 N -0.334 5.334 9 C 0.018 3.982 10 H 0.126 0.874 11 C -0.177 4.177 12 C -0.133 4.133 13 H 0.094 0.906 14 C 0.015 3.985 15 N -0.158 5.158 16 C -0.096 4.096 17 C -0.323 4.323 18 C -0.161 4.161 19 N -0.150 5.150 20 C -0.159 4.159 21 C -0.265 4.265 22 C -0.037 4.037 23 H 0.234 0.766 24 H 0.143 0.857 25 H -0.227 1.227 26 H -0.209 1.209 27 H 0.182 0.818 28 H 0.240 0.760 29 H 0.117 0.883 30 H 0.065 0.935 31 H 0.144 0.856 32 H 0.112 0.888 33 H 0.222 0.778 34 H 0.177 0.823 35 H 0.210 0.790 36 H 0.100 0.900 37 H 0.143 0.857 38 H 0.168 0.832 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.835 -2.353 3.644 4.417 hybrid contribution -0.346 -0.268 0.667 0.797 sum -1.181 -2.621 4.310 5.181 Atomic orbital electron populations 1.86564 1.18660 1.80295 1.50113 1.24894 0.83171 1.11123 0.98062 0.94163 0.90595 0.72645 0.76566 1.20967 1.06762 0.96139 0.99935 1.22492 0.91613 0.99651 0.87603 1.67147 1.26864 1.09891 1.24605 1.18635 0.89450 0.88407 0.87461 1.44270 1.59911 1.08948 1.20270 1.21999 0.98535 0.79131 0.98489 0.87375 1.23507 0.97358 1.00725 0.96079 1.22781 0.96876 0.97277 0.96373 0.90641 1.22082 0.73454 0.99261 1.03742 1.49013 1.07426 1.55909 1.03499 1.23181 0.89421 1.00514 0.96498 1.21858 0.99155 1.17275 0.94010 1.24311 0.94439 0.99872 0.97479 1.77312 1.06332 1.25331 1.06058 1.23312 0.93958 1.03777 0.94810 1.21692 1.06019 1.02230 0.96543 1.21431 0.93105 0.93561 0.95647 0.76639 0.85678 1.22672 1.20926 0.81785 0.76043 0.88250 0.93505 0.85635 0.88808 0.77834 0.82341 0.79011 0.89962 0.85733 0.83177 0.83470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.59 12.84 -148.98 -1.91 -3.50 16 2 C -0.06 -0.01 2.82 71.24 0.20 0.19 16 3 Si 0.75 -0.52 29.91 68.60 2.05 1.53 16 4 C -0.23 -0.47 5.36 -19.76 -0.11 -0.57 16 5 C 0.14 0.56 9.84 84.62 0.83 1.39 16 6 N -0.57 -4.13 10.39 -193.26 -2.01 -6.14 16 7 C 0.40 1.83 7.65 133.06 1.02 2.84 16 8 N -0.70 -0.39 5.44 -322.05 -1.75 -2.14 16 9 C 0.12 -0.55 4.07 45.52 0.19 -0.36 16 10 H 0.11 -0.67 6.17 -2.39 -0.01 -0.69 16 11 C -0.14 0.30 7.45 31.21 0.23 0.53 16 12 C -0.11 0.52 3.72 -10.18 -0.04 0.48 16 13 H 0.08 -0.02 8.14 -2.38 -0.02 -0.04 16 14 C 0.13 -0.74 6.35 86.38 0.55 -0.19 16 15 N -0.38 -0.63 3.68 -348.04 -1.28 -1.91 16 16 C 0.05 -0.03 11.45 83.54 0.96 0.93 16 17 C -0.29 -0.60 10.80 21.99 0.24 -0.36 16 18 C 0.02 0.12 12.03 85.23 1.02 1.15 16 19 N -0.33 -2.45 12.42 -57.03 -0.71 -3.16 16 20 C -0.12 1.04 7.38 31.12 0.23 1.27 16 21 C -0.24 -0.46 9.28 22.50 0.21 -0.25 16 22 C -0.01 -0.02 9.83 22.44 0.22 0.20 16 23 H 0.38 -0.86 8.70 -74.06 -0.64 -1.50 16 24 H 0.13 -0.21 7.96 -2.39 -0.02 -0.23 16 25 H -0.30 -1.96 7.11 99.48 0.71 -1.26 16 26 H -0.28 -0.91 7.01 99.48 0.70 -0.21 16 27 H 0.17 0.05 4.85 -2.91 -0.01 0.04 16 28 H 0.40 0.30 8.83 -92.71 -0.82 -0.52 16 29 H 0.10 -0.36 7.90 -2.39 -0.02 -0.38 16 30 H 0.05 0.22 8.14 -2.38 -0.02 0.20 16 31 H 0.13 -1.42 8.07 -2.38 -0.02 -1.44 16 32 H 0.09 -0.62 7.85 -2.39 -0.02 -0.64 16 33 H 0.20 -1.71 8.06 -2.91 -0.02 -1.74 16 34 H 0.16 -0.26 8.06 -2.91 -0.02 -0.29 16 35 H 0.19 0.08 8.06 -2.91 -0.02 0.06 16 36 H 0.08 -0.68 8.14 -2.39 -0.02 -0.70 16 37 H 0.12 -1.59 8.10 -2.39 -0.02 -1.61 16 38 H 0.15 -0.34 6.06 -2.91 -0.02 -0.36 16 39 H 0.15 -0.17 8.06 -2.91 -0.02 -0.20 16 Total: 0.00 -19.34 327.95 -0.21 -19.55 By element: Atomic # 1 Polarization: -11.15 SS G_CDS: -0.35 Total: -11.50 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 5.75 Total: 7.25 kcal Atomic # 7 Polarization: -7.59 SS G_CDS: -5.75 Total: -13.34 kcal Atomic # 8 Polarization: -1.59 SS G_CDS: -1.91 Total: -3.50 kcal Atomic # 14 Polarization: -0.52 SS G_CDS: 2.05 Total: 1.53 kcal Total: -19.34 -0.21 -19.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687810_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.953 kcal (2) G-P(sol) polarization free energy of solvation -19.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds