Wall clock time and date at job start Mon Mar 8 2021 07:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86304 * 109.46980 * 2 1 4 4 C 1.50697 * 109.47171 * 239.99828 * 2 1 3 5 5 C 1.33326 * 125.95071 * 299.97525 * 4 2 1 6 6 N 1.32117 * 114.57468 * 179.75650 * 5 4 2 7 7 C 1.29688 * 116.87069 * 0.46916 * 6 5 4 8 8 N 1.38606 * 124.95011 * 179.81551 * 7 6 5 9 9 C 1.46492 * 120.00434 * 359.69883 * 8 7 6 10 10 H 1.09001 * 112.84933 * 336.19651 * 9 8 7 11 11 C 1.53956 * 113.61723 * 107.46233 * 9 8 7 12 12 C 1.53785 * 87.01613 * 89.20324 * 11 9 8 13 13 H 1.09004 * 113.61581 * 270.77062 * 12 11 9 14 14 C 1.53001 * 113.61144 * 139.95499 * 12 11 9 15 15 N 1.46499 * 109.47001 * 85.86453 * 14 12 11 16 16 C 1.34954 * 126.03713 * 124.99785 * 15 14 12 17 17 C 1.35315 * 107.74451 * 180.02562 * 16 15 14 18 18 C 1.39867 * 107.92134 * 0.02562 * 17 16 15 19 19 N 1.30834 * 108.20347 * 359.97438 * 18 17 16 20 20 C 1.53779 * 113.61732 * 205.00199 * 9 8 7 21 21 S 1.70967 * 110.09722 * 359.55460 * 7 6 5 22 22 H 0.96696 * 113.99538 * 59.99760 * 1 2 3 23 23 H 1.09003 * 109.47114 * 119.99702 * 2 1 3 24 24 H 1.48493 * 110.00158 * 298.67868 * 3 2 1 25 25 H 1.48498 * 109.99997 * 59.99848 * 3 2 1 26 26 H 1.07997 * 122.71001 * 0.02562 * 5 4 2 27 27 H 0.97000 * 119.99815 * 179.69993 * 8 7 6 28 28 H 1.09000 * 113.66569 * 334.68020 * 11 9 8 29 29 H 1.09000 * 113.61728 * 203.71895 * 11 9 8 30 30 H 1.08993 * 109.47166 * 325.86090 * 14 12 11 31 31 H 1.08999 * 109.46588 * 205.86011 * 14 12 11 32 32 H 1.08001 * 126.12517 * 359.75938 * 16 15 14 33 33 H 1.07997 * 126.03615 * 179.97438 * 17 16 15 34 34 H 1.08000 * 125.89932 * 180.02562 * 18 17 16 35 35 H 1.09005 * 113.61656 * 156.25025 * 20 9 8 36 36 H 1.09002 * 113.61533 * 25.34618 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.6839 -1.9790 -1.5577 6 7 2.2342 -2.3709 -2.6930 7 6 2.9426 -1.4942 -3.3344 8 7 3.5954 -1.7254 -4.5351 9 6 3.5180 -3.0439 -5.1689 10 1 3.2990 -3.8422 -4.4598 11 6 2.6293 -3.0728 -6.4257 12 6 3.8892 -2.7042 -7.2270 13 1 4.0486 -1.6299 -7.3202 14 6 4.0022 -3.4398 -8.5638 15 7 3.2610 -2.7033 -9.5906 16 6 3.7564 -2.2663 -10.7674 17 6 2.7574 -1.6346 -11.4263 18 6 1.6126 -1.6868 -10.6244 19 7 1.9132 -2.3274 -9.5240 20 6 4.7054 -3.3523 -6.0962 21 16 2.9480 -0.0094 -2.4868 22 1 -0.3932 0.4417 -0.7650 23 1 1.7924 -0.5138 0.8900 24 1 1.5880 2.4586 -1.2242 25 1 1.5615 2.4679 1.2085 26 1 1.0787 -2.6320 -0.9464 27 1 4.1035 -1.0142 -4.9556 28 1 1.8625 -2.2983 -6.4373 29 1 2.2367 -4.0622 -6.6603 30 1 3.5856 -4.4419 -8.4634 31 1 5.0510 -3.5095 -8.8524 32 1 4.7698 -2.3938 -11.1184 33 1 2.8313 -1.1712 -12.3990 34 1 0.6469 -1.2711 -10.8714 35 1 4.8813 -4.4183 -6.2404 36 1 5.6120 -2.8032 -5.8420 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14687810_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:42:38 Heat of formation + Delta-G solvation = 133.517609 kcal Electronic energy + Delta-G solvation = -20292.659574 eV Core-core repulsion = 17101.361326 eV Total energy + Delta-G solvation = -3191.298248 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.06497 -41.01884 -40.09466 -37.95428 -35.66911 -33.69810 -31.22895 -30.89985 -28.68113 -26.87297 -26.50997 -25.01615 -23.95142 -21.93593 -21.74832 -21.36747 -20.10356 -19.60736 -18.24926 -18.08721 -17.10488 -16.66523 -16.49192 -16.30492 -15.95723 -15.62888 -15.43421 -15.05968 -14.92760 -14.82428 -14.43042 -13.88314 -13.78338 -13.66075 -13.49192 -13.04306 -12.88133 -12.36077 -12.31552 -11.99097 -11.88235 -11.56933 -11.33825 -11.10070 -10.85957 -10.29877 -10.23764 -10.16760 -9.48281 -8.73440 -5.05233 -0.02033 0.04389 0.70807 1.01129 1.25917 1.56817 1.58075 1.91630 1.99509 2.04828 2.08764 3.20006 3.31618 3.35568 3.50371 3.66293 3.71455 3.91937 3.94043 3.96282 4.06142 4.24020 4.32285 4.52569 4.55124 4.61080 4.64705 4.71886 4.76515 4.86842 4.93043 4.99553 5.08175 5.14321 5.26737 5.77185 5.86806 6.03646 6.10038 6.37091 6.82869 7.02480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.526 6.526 2 C -0.017 4.017 3 Si 0.653 3.347 4 C -0.305 4.305 5 C 0.120 3.880 6 N -0.549 5.549 7 C 0.328 3.672 8 N -0.675 5.675 9 C 0.135 3.865 10 H 0.108 0.892 11 C -0.134 4.134 12 C -0.122 4.122 13 H 0.093 0.907 14 C 0.142 3.858 15 N -0.372 5.372 16 C 0.049 3.951 17 C -0.275 4.275 18 C 0.041 3.959 19 N -0.289 5.289 20 C -0.138 4.138 21 S 0.088 5.912 22 H 0.377 0.623 23 H 0.125 0.875 24 H -0.244 1.244 25 H -0.237 1.237 26 H 0.176 0.824 27 H 0.413 0.587 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.172 0.828 33 H 0.146 0.854 34 H 0.182 0.818 35 H 0.102 0.898 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.647 0.273 -2.237 6.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.332 6.332 2 C -0.130 4.130 3 Si 0.553 3.447 4 C -0.428 4.428 5 C -0.032 4.032 6 N -0.274 5.274 7 C -0.042 4.042 8 N -0.314 5.314 9 C 0.027 3.973 10 H 0.126 0.874 11 C -0.173 4.173 12 C -0.141 4.141 13 H 0.111 0.889 14 C 0.021 3.979 15 N -0.154 5.154 16 C -0.097 4.097 17 C -0.304 4.304 18 C -0.145 4.145 19 N -0.110 5.110 20 C -0.177 4.177 21 S 0.337 5.663 22 H 0.225 0.775 23 H 0.143 0.857 24 H -0.168 1.168 25 H -0.161 1.161 26 H 0.193 0.807 27 H 0.251 0.749 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.189 0.811 33 H 0.164 0.836 34 H 0.199 0.801 35 H 0.120 0.880 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.556 0.579 -0.913 5.660 hybrid contribution -0.964 -0.135 -1.257 1.590 sum 4.592 0.444 -2.170 5.098 Atomic orbital electron populations 1.86614 1.17490 1.79903 1.49232 1.24071 0.83465 1.09759 0.95694 0.95237 0.91661 0.75292 0.82547 1.25520 1.13361 0.99209 1.04689 1.21332 0.97120 0.93078 0.91631 1.66475 1.16872 1.33648 1.10372 1.23694 0.94980 0.93420 0.92102 1.43675 1.54410 1.13995 1.19280 1.21912 0.96398 0.84857 0.94101 0.87383 1.23460 0.96526 1.03048 0.94246 1.22907 0.98453 1.00323 0.92458 0.88882 1.21785 0.95450 0.94855 0.85850 1.48746 1.08173 1.43957 1.14565 1.22607 1.00324 0.99052 0.87668 1.21556 0.93268 1.11778 1.03809 1.23947 0.99985 0.98648 0.91942 1.77398 0.92376 1.18836 1.22439 1.23388 0.97423 1.02425 0.94505 1.83997 1.51453 1.13513 1.17329 0.77527 0.85709 1.16798 1.16076 0.80683 0.74925 0.90632 0.88903 0.89439 0.88446 0.81062 0.83578 0.80148 0.87968 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.76 12.87 -35.23 -0.45 -1.21 16 2 C -0.02 0.00 2.99 36.00 0.11 0.10 16 3 Si 0.65 -0.23 31.05 -169.99 -5.28 -5.51 16 4 C -0.31 -0.31 5.74 -36.03 -0.21 -0.52 16 5 C 0.12 0.26 11.22 -19.14 -0.21 0.05 16 6 N -0.55 -1.78 9.83 -15.21 -0.15 -1.93 16 7 C 0.33 0.51 8.09 -87.68 -0.71 -0.20 16 8 N -0.68 0.40 5.42 -54.91 -0.30 0.10 16 9 C 0.14 -0.14 4.44 -67.03 -0.30 -0.44 16 10 H 0.11 0.05 7.67 -51.93 -0.40 -0.35 16 11 C -0.13 0.06 7.45 -25.82 -0.19 -0.14 16 12 C -0.12 0.27 3.70 -89.80 -0.33 -0.06 16 13 H 0.09 -0.12 8.14 -51.93 -0.42 -0.54 16 14 C 0.14 -0.30 6.33 -4.04 -0.03 -0.33 16 15 N -0.37 -0.34 3.68 -61.37 -0.23 -0.57 16 16 C 0.05 0.00 11.45 -17.22 -0.20 -0.20 16 17 C -0.27 -0.24 10.80 -40.01 -0.43 -0.67 16 18 C 0.04 0.08 12.03 -17.37 -0.21 -0.13 16 19 N -0.29 -0.95 12.42 30.62 0.38 -0.57 16 20 C -0.14 0.48 7.39 -25.92 -0.19 0.29 16 21 S 0.09 0.03 20.57 -107.50 -2.21 -2.18 16 22 H 0.38 -0.40 8.70 45.56 0.40 0.00 16 23 H 0.13 -0.11 7.96 -51.93 -0.41 -0.52 16 24 H -0.24 -0.40 7.11 56.52 0.40 0.00 16 25 H -0.24 -0.54 7.11 56.52 0.40 -0.14 16 26 H 0.18 0.19 8.06 -52.49 -0.42 -0.23 16 27 H 0.41 -1.01 8.83 -40.82 -0.36 -1.37 16 28 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.09 -0.03 7.92 -51.93 -0.41 -0.44 16 30 H 0.09 -0.20 7.87 -51.93 -0.41 -0.61 16 31 H 0.10 -0.44 8.07 -51.93 -0.42 -0.85 16 32 H 0.17 -0.56 8.06 -52.49 -0.42 -0.99 16 33 H 0.15 -0.13 8.06 -52.49 -0.42 -0.55 16 34 H 0.18 -0.08 8.06 -52.49 -0.42 -0.51 16 35 H 0.10 -0.46 8.10 -51.93 -0.42 -0.88 16 36 H 0.08 -0.31 8.14 -51.93 -0.42 -0.73 16 LS Contribution 323.46 15.07 4.87 4.87 Total: 0.00 -7.35 323.46 -10.86 -18.21 By element: Atomic # 1 Polarization: -4.38 SS G_CDS: -4.59 Total: -8.97 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.90 Total: -2.24 kcal Atomic # 7 Polarization: -2.67 SS G_CDS: -0.29 Total: -2.97 kcal Atomic # 8 Polarization: -0.76 SS G_CDS: -0.45 Total: -1.21 kcal Atomic # 14 Polarization: -0.23 SS G_CDS: -5.28 Total: -5.51 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.21 Total: -2.18 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -7.35 -10.86 -18.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687810_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.728 kcal (2) G-P(sol) polarization free energy of solvation -7.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds