Wall clock time and date at job start Mon Mar 8 2021 07:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86304 * 109.46980 * 2 1 4 4 C 1.50697 * 109.47171 * 239.99828 * 2 1 3 5 5 C 1.33326 * 125.95071 * 299.97525 * 4 2 1 6 6 N 1.32117 * 114.57468 * 179.75650 * 5 4 2 7 7 C 1.29688 * 116.87069 * 0.46916 * 6 5 4 8 8 N 1.38606 * 124.95011 * 179.81551 * 7 6 5 9 9 C 1.46492 * 120.00434 * 359.69883 * 8 7 6 10 10 H 1.09001 * 112.84933 * 336.19651 * 9 8 7 11 11 C 1.53956 * 113.61723 * 107.46233 * 9 8 7 12 12 C 1.53785 * 87.01613 * 89.20324 * 11 9 8 13 13 H 1.09004 * 113.61581 * 270.77062 * 12 11 9 14 14 C 1.53001 * 113.61144 * 139.95499 * 12 11 9 15 15 N 1.46499 * 109.47001 * 85.86453 * 14 12 11 16 16 C 1.34954 * 126.03713 * 124.99785 * 15 14 12 17 17 C 1.35315 * 107.74451 * 180.02562 * 16 15 14 18 18 C 1.39867 * 107.92134 * 0.02562 * 17 16 15 19 19 N 1.30834 * 108.20347 * 359.97438 * 18 17 16 20 20 C 1.53779 * 113.61732 * 205.00199 * 9 8 7 21 21 S 1.70967 * 110.09722 * 359.55460 * 7 6 5 22 22 H 0.96696 * 113.99538 * 59.99760 * 1 2 3 23 23 H 1.09003 * 109.47114 * 119.99702 * 2 1 3 24 24 H 1.48493 * 110.00158 * 298.67868 * 3 2 1 25 25 H 1.48498 * 109.99997 * 59.99848 * 3 2 1 26 26 H 1.07997 * 122.71001 * 0.02562 * 5 4 2 27 27 H 0.97000 * 119.99815 * 179.69993 * 8 7 6 28 28 H 1.09000 * 113.66569 * 334.68020 * 11 9 8 29 29 H 1.09000 * 113.61728 * 203.71895 * 11 9 8 30 30 H 1.08993 * 109.47166 * 325.86090 * 14 12 11 31 31 H 1.08999 * 109.46588 * 205.86011 * 14 12 11 32 32 H 1.08001 * 126.12517 * 359.75938 * 16 15 14 33 33 H 1.07997 * 126.03615 * 179.97438 * 17 16 15 34 34 H 1.08000 * 125.89932 * 180.02562 * 18 17 16 35 35 H 1.09005 * 113.61656 * 156.25025 * 20 9 8 36 36 H 1.09002 * 113.61533 * 25.34618 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.6839 -1.9790 -1.5577 6 7 2.2342 -2.3709 -2.6930 7 6 2.9426 -1.4942 -3.3344 8 7 3.5954 -1.7254 -4.5351 9 6 3.5180 -3.0439 -5.1689 10 1 3.2990 -3.8422 -4.4598 11 6 2.6293 -3.0728 -6.4257 12 6 3.8892 -2.7042 -7.2270 13 1 4.0486 -1.6299 -7.3202 14 6 4.0022 -3.4398 -8.5638 15 7 3.2610 -2.7033 -9.5906 16 6 3.7564 -2.2663 -10.7674 17 6 2.7574 -1.6346 -11.4263 18 6 1.6126 -1.6868 -10.6244 19 7 1.9132 -2.3274 -9.5240 20 6 4.7054 -3.3523 -6.0962 21 16 2.9480 -0.0094 -2.4868 22 1 -0.3932 0.4417 -0.7650 23 1 1.7924 -0.5138 0.8900 24 1 1.5880 2.4586 -1.2242 25 1 1.5615 2.4679 1.2085 26 1 1.0787 -2.6320 -0.9464 27 1 4.1035 -1.0142 -4.9556 28 1 1.8625 -2.2983 -6.4373 29 1 2.2367 -4.0622 -6.6603 30 1 3.5856 -4.4419 -8.4634 31 1 5.0510 -3.5095 -8.8524 32 1 4.7698 -2.3938 -11.1184 33 1 2.8313 -1.1712 -12.3990 34 1 0.6469 -1.2711 -10.8714 35 1 4.8813 -4.4183 -6.2404 36 1 5.6120 -2.8032 -5.8420 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14687810_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:42:38 Heat of formation + Delta-G solvation = 135.572853 kcal Electronic energy + Delta-G solvation = -20292.570452 eV Core-core repulsion = 17101.361326 eV Total energy + Delta-G solvation = -3191.209126 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.05176 -41.03562 -40.09120 -38.02302 -35.64855 -33.67200 -31.29322 -30.91604 -28.62657 -26.80863 -26.50770 -25.02785 -23.94069 -21.92605 -21.75444 -21.35050 -20.11247 -19.61284 -18.22994 -18.11587 -17.11871 -16.60556 -16.53398 -16.27732 -16.01515 -15.62528 -15.44199 -15.09504 -14.90423 -14.81906 -14.39488 -13.96565 -13.70112 -13.61266 -13.39753 -12.97396 -12.88472 -12.48653 -12.22323 -12.02507 -11.84349 -11.59048 -11.22937 -11.11854 -10.90396 -10.33398 -10.32920 -10.24164 -9.48707 -8.76850 -5.05951 -0.10435 -0.01099 0.63391 1.01339 1.23301 1.53185 1.68170 1.86689 1.93123 1.95253 2.11840 3.34870 3.35788 3.44926 3.59178 3.72475 3.79520 3.90082 4.02557 4.08996 4.22904 4.35778 4.47770 4.55738 4.65386 4.68110 4.74602 4.78333 4.79879 4.91732 5.01194 5.05366 5.06273 5.15882 5.29230 5.75229 5.85541 6.10914 6.19952 6.40775 6.79536 6.97419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.023 4.023 3 Si 0.725 3.275 4 C -0.305 4.305 5 C 0.103 3.897 6 N -0.578 5.578 7 C 0.316 3.684 8 N -0.668 5.668 9 C 0.131 3.869 10 H 0.092 0.908 11 C -0.136 4.136 12 C -0.111 4.111 13 H 0.085 0.915 14 C 0.134 3.866 15 N -0.375 5.375 16 C 0.053 3.947 17 C -0.294 4.294 18 C 0.024 3.976 19 N -0.331 5.331 20 C -0.117 4.117 21 S 0.114 5.886 22 H 0.386 0.614 23 H 0.137 0.863 24 H -0.269 1.269 25 H -0.273 1.273 26 H 0.179 0.821 27 H 0.422 0.578 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.130 0.870 32 H 0.207 0.793 33 H 0.159 0.841 34 H 0.192 0.808 35 H 0.119 0.881 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.559 0.198 -2.774 8.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.135 4.135 3 Si 0.628 3.372 4 C -0.428 4.428 5 C -0.047 4.047 6 N -0.304 5.304 7 C -0.054 4.054 8 N -0.308 5.308 9 C 0.023 3.977 10 H 0.110 0.890 11 C -0.175 4.175 12 C -0.130 4.130 13 H 0.104 0.896 14 C 0.014 3.986 15 N -0.158 5.158 16 C -0.094 4.094 17 C -0.323 4.323 18 C -0.161 4.161 19 N -0.153 5.153 20 C -0.155 4.155 21 S 0.363 5.637 22 H 0.235 0.765 23 H 0.154 0.846 24 H -0.195 1.195 25 H -0.198 1.198 26 H 0.196 0.804 27 H 0.261 0.739 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.148 0.852 32 H 0.224 0.776 33 H 0.177 0.823 34 H 0.208 0.792 35 H 0.137 0.863 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.480 0.495 -1.466 7.638 hybrid contribution -1.601 -0.095 -1.100 1.945 sum 5.879 0.401 -2.566 6.427 Atomic orbital electron populations 1.86587 1.18222 1.80254 1.49960 1.24294 0.82974 1.10387 0.95845 0.94410 0.90512 0.73198 0.79108 1.25640 1.13169 0.98975 1.05006 1.21452 0.97724 0.93764 0.91805 1.66469 1.17946 1.34845 1.11136 1.23934 0.94944 0.93852 0.92689 1.43744 1.53854 1.14516 1.18642 1.21939 0.97856 0.84300 0.93589 0.89001 1.23415 0.96617 1.01787 0.95692 1.22768 0.97310 1.00023 0.92883 0.89635 1.22071 0.96883 0.94442 0.85182 1.49005 1.07565 1.43824 1.15412 1.23199 1.01548 0.97666 0.86969 1.21854 0.93247 1.12611 1.04569 1.24301 1.01087 0.98672 0.92071 1.77333 0.94222 1.20271 1.23483 1.23314 0.96624 1.03498 0.92112 1.83832 1.50903 1.12388 1.16581 0.76512 0.84580 1.19513 1.19850 0.80436 0.73854 0.93747 0.89335 0.89326 0.85193 0.77634 0.82309 0.79157 0.86290 0.88852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.82 12.87 -148.98 -1.92 -3.74 16 2 C -0.02 -0.01 2.99 71.24 0.21 0.20 16 3 Si 0.73 -0.45 31.05 68.60 2.13 1.68 16 4 C -0.30 -0.77 5.74 24.57 0.14 -0.63 16 5 C 0.10 0.57 11.22 83.54 0.94 1.51 16 6 N -0.58 -4.49 9.83 -202.03 -1.99 -6.48 16 7 C 0.32 1.22 8.09 179.32 1.45 2.67 16 8 N -0.67 0.48 5.42 -327.63 -1.78 -1.29 16 9 C 0.13 -0.20 4.44 45.58 0.20 0.00 16 10 H 0.09 0.19 7.67 -2.39 -0.02 0.17 16 11 C -0.14 -0.07 7.45 31.18 0.23 0.17 16 12 C -0.11 0.53 3.70 -10.27 -0.04 0.49 16 13 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 14 C 0.13 -0.72 6.33 86.38 0.55 -0.17 16 15 N -0.38 -0.58 3.68 -348.06 -1.28 -1.86 16 16 C 0.05 -0.06 11.45 83.54 0.96 0.90 16 17 C -0.29 -0.50 10.80 21.99 0.24 -0.27 16 18 C 0.02 0.12 12.03 85.24 1.02 1.15 16 19 N -0.33 -2.57 12.42 -57.03 -0.71 -3.28 16 20 C -0.12 0.96 7.39 31.12 0.23 1.19 16 21 S 0.11 0.09 20.57 -56.49 -1.16 -1.07 16 22 H 0.39 -0.57 8.70 -74.06 -0.64 -1.21 16 23 H 0.14 -0.27 7.96 -2.39 -0.02 -0.29 16 24 H -0.27 -0.95 7.11 99.48 0.71 -0.25 16 25 H -0.27 -1.44 7.11 99.48 0.71 -0.73 16 26 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 27 H 0.42 -2.10 8.83 -92.71 -0.82 -2.92 16 28 H 0.04 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.09 0.09 7.92 -2.39 -0.02 0.07 16 30 H 0.09 -0.47 7.87 -2.39 -0.02 -0.49 16 31 H 0.13 -1.54 8.07 -2.39 -0.02 -1.56 16 32 H 0.21 -1.89 8.06 -2.91 -0.02 -1.92 16 33 H 0.16 -0.32 8.06 -2.91 -0.02 -0.34 16 34 H 0.19 0.13 8.06 -2.91 -0.02 0.11 16 35 H 0.12 -1.31 8.10 -2.38 -0.02 -1.33 16 36 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 Total: 0.00 -18.96 323.46 -0.88 -19.84 By element: Atomic # 1 Polarization: -10.69 SS G_CDS: -0.31 Total: -11.00 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 6.13 Total: 7.21 kcal Atomic # 7 Polarization: -7.16 SS G_CDS: -5.75 Total: -12.91 kcal Atomic # 8 Polarization: -1.82 SS G_CDS: -1.92 Total: -3.74 kcal Atomic # 14 Polarization: -0.45 SS G_CDS: 2.13 Total: 1.68 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -1.16 Total: -1.07 kcal Total: -18.96 -0.88 -19.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687810_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.409 kcal (2) G-P(sol) polarization free energy of solvation -18.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds