Wall clock time and date at job start Mon Mar 8 2021 07:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33323 * 125.95359 * 2 1 4 4 C 1.50698 * 122.71002 * 0.02647 * 3 2 1 5 5 O 1.42902 * 109.47210 * 329.96629 * 4 3 2 6 6 Si 1.86303 * 109.46828 * 209.97408 * 4 3 2 7 7 N 1.32124 * 114.58053 * 180.02562 * 3 2 1 8 8 C 1.29683 * 116.86353 * 0.02562 * 7 3 2 9 9 N 1.38609 * 124.94801 * 179.97438 * 8 7 3 10 10 C 1.46499 * 119.99887 * 180.02562 * 9 8 7 11 11 H 1.09002 * 112.85372 * 23.80047 * 10 9 8 12 12 C 1.53787 * 113.61699 * 154.99994 * 10 9 8 13 13 C 1.53780 * 87.08097 * 89.11304 * 12 10 9 14 14 H 1.09001 * 113.61843 * 270.88725 * 13 12 10 15 15 C 1.52999 * 113.61319 * 140.06669 * 13 12 10 16 16 N 1.46507 * 109.46964 * 174.99836 * 15 13 12 17 17 C 1.34947 * 126.03233 * 124.71671 * 16 15 13 18 18 C 1.35320 * 107.74283 * 179.83478 * 17 16 15 19 19 C 1.39870 * 107.91729 * 0.43136 * 18 17 16 20 20 N 1.30838 * 108.20617 * 359.72813 * 19 18 17 21 21 C 1.53779 * 87.08187 * 25.43418 * 13 12 10 22 22 S 1.70968 * 110.10323 * 0.02562 * 8 7 3 23 23 H 1.08994 * 109.47703 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46900 * 300.00245 * 1 2 3 25 25 H 1.09009 * 109.46914 * 59.99762 * 1 2 3 26 26 H 1.08996 * 109.47963 * 89.97205 * 4 3 2 27 27 H 0.96695 * 114.00486 * 300.00652 * 5 4 3 28 28 H 1.48507 * 109.99839 * 179.97438 * 6 4 3 29 29 H 1.48508 * 109.99855 * 301.31286 * 6 4 3 30 30 H 0.96995 * 120.00425 * 0.02562 * 9 8 7 31 31 H 1.08991 * 113.61470 * 203.66385 * 12 10 9 32 32 H 1.08997 * 113.60735 * 334.56704 * 12 10 9 33 33 H 1.08995 * 109.47171 * 295.00061 * 15 13 12 34 34 H 1.09004 * 109.47135 * 55.00547 * 15 13 12 35 35 H 1.07994 * 126.13073 * 0.02562 * 17 16 15 36 36 H 1.07998 * 126.03889 * 180.15841 * 18 17 16 37 37 H 1.08001 * 125.89632 * 179.75570 * 19 18 17 38 38 H 1.09004 * 113.61799 * 220.01738 * 21 13 12 39 39 H 1.08999 * 113.61360 * 89.11921 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2898 1.0792 0.0000 4 6 1.7415 2.4829 0.0006 5 8 0.4815 2.5024 -0.6733 6 14 2.9326 3.6152 -0.8771 7 7 3.5851 0.8187 -0.0005 8 6 3.9315 -0.4310 -0.0015 9 7 5.2384 -0.8927 -0.0027 10 6 5.5064 -2.3330 -0.0043 11 1 4.6801 -2.9169 -0.4098 12 6 6.8743 -2.7045 -0.6009 13 6 7.4479 -2.5452 0.8170 14 1 7.7793 -1.5316 1.0427 15 6 8.4899 -3.6054 1.1792 16 7 9.0602 -3.3005 2.4938 17 6 9.0941 -4.1316 3.5565 18 6 9.7046 -3.4778 4.5719 19 6 10.0468 -2.2002 4.1170 20 7 9.6611 -2.0928 2.8714 21 6 6.0366 -2.8624 1.3387 22 16 2.5412 -1.4261 -0.0025 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6092 2.8210 1.0283 27 1 0.5238 2.2130 -1.5949 28 1 2.4031 5.0026 -0.8840 29 1 4.2563 3.5795 -0.2048 30 1 5.9755 -0.2623 -0.0025 31 1 6.9228 -3.7254 -0.9794 32 1 7.2548 -1.9702 -1.3109 33 1 8.0155 -4.5863 1.2075 34 1 9.2824 -3.6066 0.4308 35 1 8.7066 -5.1390 3.5896 36 1 9.8904 -3.8713 5.5603 37 1 10.5440 -1.4346 4.6942 38 1 5.7408 -2.2557 2.1946 39 1 5.8561 -3.9266 1.4905 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14687810_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:42:40 Heat of formation + Delta-G solvation = 132.682312 kcal Electronic energy + Delta-G solvation = -22295.878117 eV Core-core repulsion = 18949.006028 eV Total energy + Delta-G solvation = -3346.872088 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.110 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.08351 -41.19678 -40.45753 -37.81296 -35.71000 -33.80051 -32.39329 -31.00866 -29.45049 -28.32853 -26.79095 -25.66654 -24.58976 -24.13287 -22.05459 -21.74967 -20.74699 -20.46365 -18.85305 -18.26836 -17.84992 -17.45951 -16.71448 -16.63328 -16.32542 -15.72467 -15.69062 -15.41194 -15.25463 -14.69170 -14.36969 -14.30695 -14.14158 -13.85600 -13.75218 -13.53726 -13.48381 -13.43472 -12.95972 -12.69813 -12.43732 -12.21002 -12.07688 -11.69715 -11.60953 -11.40398 -10.98736 -10.66265 -10.41211 -10.34221 -10.04096 -9.49673 -8.66893 -5.00626 -0.05681 0.12307 0.70873 0.98603 1.26547 1.65957 1.68968 1.79759 1.86489 1.92489 2.08994 3.31475 3.34677 3.44781 3.50046 3.52036 3.67632 3.92084 4.07183 4.13934 4.19494 4.29731 4.32487 4.42445 4.47121 4.54221 4.67760 4.71360 4.74824 4.84352 4.86541 4.89023 4.94210 5.01837 5.06294 5.13306 5.21282 5.33335 5.69240 5.72184 6.18195 6.21375 6.64757 6.75812 6.91507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.246 4.246 3 C 0.050 3.950 4 C -0.028 4.028 5 O -0.538 6.538 6 Si 0.791 3.209 7 N -0.576 5.576 8 C 0.307 3.693 9 N -0.676 5.676 10 C 0.122 3.878 11 H 0.109 0.891 12 C -0.117 4.117 13 C -0.121 4.121 14 H 0.074 0.926 15 C 0.136 3.864 16 N -0.374 5.374 17 C 0.055 3.945 18 C -0.296 4.296 19 C 0.026 3.974 20 N -0.340 5.340 21 C -0.145 4.145 22 S 0.132 5.868 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.096 0.904 26 H 0.111 0.889 27 H 0.395 0.605 28 H -0.291 1.291 29 H -0.306 1.306 30 H 0.410 0.590 31 H 0.134 0.866 32 H 0.080 0.920 33 H 0.133 0.867 34 H 0.090 0.910 35 H 0.209 0.791 36 H 0.159 0.841 37 H 0.192 0.808 38 H 0.046 0.954 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.966 -8.477 -3.635 9.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.369 4.369 3 C -0.080 4.080 4 C -0.142 4.142 5 O -0.345 6.345 6 Si 0.698 3.302 7 N -0.304 5.304 8 C -0.064 4.064 9 N -0.316 5.316 10 C 0.017 3.983 11 H 0.127 0.873 12 C -0.156 4.156 13 C -0.140 4.140 14 H 0.093 0.907 15 C 0.016 3.984 16 N -0.156 5.156 17 C -0.091 4.091 18 C -0.325 4.325 19 C -0.159 4.159 20 N -0.162 5.162 21 C -0.184 4.184 22 S 0.381 5.619 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.115 0.885 26 H 0.128 0.872 27 H 0.245 0.755 28 H -0.219 1.219 29 H -0.234 1.234 30 H 0.248 0.752 31 H 0.152 0.848 32 H 0.099 0.901 33 H 0.151 0.849 34 H 0.108 0.892 35 H 0.225 0.775 36 H 0.177 0.823 37 H 0.209 0.791 38 H 0.065 0.935 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.501 -7.739 -4.198 8.819 hybrid contribution 0.378 0.763 1.814 2.004 sum -0.123 -6.976 -2.384 7.373 Atomic orbital electron populations 1.20199 0.85182 1.02311 1.04008 1.25449 1.02236 0.92988 1.16215 1.20211 0.86670 0.97775 1.03332 1.24398 0.92722 0.95263 1.01824 1.86490 1.28009 1.89642 1.30376 0.93257 0.73779 0.74295 0.88886 1.65958 1.18133 1.17882 1.28417 1.23517 0.92700 0.91661 0.98511 1.43798 1.01234 1.07170 1.79356 1.22089 0.99592 0.78746 0.97904 0.87340 1.23335 0.92128 1.05073 0.95038 1.22803 0.94028 0.99215 0.97929 0.90729 1.22096 0.96363 1.00148 0.79804 1.48987 1.45047 1.09782 1.11795 1.23195 1.00166 0.98647 0.87115 1.21869 1.12180 0.95910 1.02522 1.24283 1.00008 0.98880 0.92715 1.77261 1.18000 1.04968 1.16008 1.23645 0.95109 1.02990 0.96679 1.83704 0.95154 1.09455 1.73541 0.91475 0.91446 0.88515 0.87173 0.75459 1.21934 1.23401 0.75218 0.84836 0.90104 0.84900 0.89170 0.77474 0.82298 0.79123 0.93505 0.86142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.04 8.91 71.24 0.63 0.68 16 2 C -0.25 -0.79 6.50 24.58 0.16 -0.63 16 3 C 0.05 0.30 5.92 41.40 0.25 0.54 16 4 C -0.03 -0.11 2.94 71.24 0.21 0.10 16 5 O -0.54 -0.16 10.17 -148.98 -1.52 -1.68 16 6 Si 0.79 3.52 32.08 68.60 2.20 5.72 16 7 N -0.58 -4.93 8.95 -189.87 -1.70 -6.63 16 8 C 0.31 1.43 8.24 179.32 1.48 2.90 16 9 N -0.68 -0.33 5.42 -327.89 -1.78 -2.11 16 10 C 0.12 -0.68 4.31 45.52 0.20 -0.48 16 11 H 0.11 -0.80 7.06 -2.39 -0.02 -0.82 16 12 C -0.12 1.08 7.39 31.12 0.23 1.31 16 13 C -0.12 0.59 3.74 -10.27 -0.04 0.55 16 14 H 0.07 0.15 7.96 -2.39 -0.02 0.13 16 15 C 0.14 -0.81 6.35 86.38 0.55 -0.26 16 16 N -0.37 -0.61 3.68 -348.05 -1.28 -1.89 16 17 C 0.06 -0.05 11.45 83.54 0.96 0.91 16 18 C -0.30 -0.65 10.80 21.99 0.24 -0.41 16 19 C 0.03 0.15 12.03 85.24 1.02 1.17 16 20 N -0.34 -2.85 12.27 -57.02 -0.70 -3.55 16 21 C -0.15 0.76 7.43 31.12 0.23 0.99 16 22 S 0.13 0.14 21.69 -56.49 -1.23 -1.08 16 23 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 24 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 25 H 0.10 -0.35 6.40 -2.38 -0.02 -0.37 16 26 H 0.11 0.60 7.96 -2.39 -0.02 0.58 16 27 H 0.39 -2.90 8.13 -74.06 -0.60 -3.50 16 28 H -0.29 -2.67 7.11 99.48 0.71 -1.96 16 29 H -0.31 -4.12 7.11 99.48 0.71 -3.41 16 30 H 0.41 0.59 8.82 -92.71 -0.82 -0.23 16 31 H 0.13 -1.95 8.10 -2.39 -0.02 -1.97 16 32 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 33 H 0.13 -1.74 7.78 -2.39 -0.02 -1.76 16 34 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 35 H 0.21 -1.95 8.06 -2.91 -0.02 -1.97 16 36 H 0.16 -0.24 8.06 -2.91 -0.02 -0.27 16 37 H 0.19 0.24 8.06 -2.91 -0.02 0.21 16 38 H 0.05 0.06 8.14 -2.38 -0.02 0.04 16 39 H 0.12 -1.22 7.90 -2.39 -0.02 -1.24 16 Total: 0.00 -21.56 339.46 -0.18 -21.75 By element: Atomic # 1 Polarization: -17.59 SS G_CDS: -0.30 Total: -17.89 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 6.11 Total: 7.37 kcal Atomic # 7 Polarization: -8.73 SS G_CDS: -5.46 Total: -14.18 kcal Atomic # 8 Polarization: -0.16 SS G_CDS: -1.52 Total: -1.68 kcal Atomic # 14 Polarization: 3.52 SS G_CDS: 2.20 Total: 5.72 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -1.23 Total: -1.08 kcal Total: -21.56 -0.18 -21.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687810_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.428 kcal (2) G-P(sol) polarization free energy of solvation -21.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds