Wall clock time and date at job start Mon Mar 8 2021 07:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86302 * 109.46883 * 2 1 4 4 C 1.50700 * 109.47481 * 119.99970 * 2 1 3 5 5 C 1.37983 * 120.33009 * 244.98044 * 4 2 1 6 6 N 1.32006 * 120.90082 * 180.02562 * 5 4 2 7 7 C 1.32331 * 121.64750 * 359.97438 * 6 5 4 8 8 N 1.39143 * 119.71787 * 180.02562 * 7 6 5 9 9 C 1.46501 * 119.99990 * 0.02562 * 8 7 6 10 10 H 1.08998 * 112.85019 * 334.66174 * 9 8 7 11 11 C 1.53777 * 113.61501 * 105.86174 * 9 8 7 12 12 C 1.54059 * 86.98575 * 89.16285 * 11 9 8 13 13 H 1.09000 * 113.68768 * 270.87364 * 12 11 9 14 14 C 1.52998 * 113.62109 * 139.97769 * 12 11 9 15 15 N 1.46500 * 109.47091 * 87.50418 * 14 12 11 16 16 C 1.34944 * 126.03830 * 125.00094 * 15 14 12 17 17 C 1.35320 * 107.74596 * 179.97438 * 16 15 14 18 18 C 1.39865 * 107.92165 * 359.97438 * 17 16 15 19 19 N 1.30842 * 108.20290 * 359.74278 * 18 17 16 20 20 C 1.53779 * 87.07507 * 25.43247 * 12 11 9 21 21 C 1.39343 * 120.56358 * 359.74929 * 7 6 5 22 22 F 1.35103 * 120.47285 * 180.27969 * 21 7 6 23 23 C 1.38438 * 119.05872 * 0.50207 * 21 7 6 24 24 H 0.96708 * 113.99846 * 299.99824 * 1 2 3 25 25 H 1.08999 * 109.46846 * 240.00250 * 2 1 3 26 26 H 1.48500 * 109.99738 * 178.68191 * 3 2 1 27 27 H 1.48497 * 110.00127 * 300.00341 * 3 2 1 28 28 H 1.08001 * 119.54529 * 0.04317 * 5 4 2 29 29 H 0.97001 * 120.00030 * 180.02562 * 8 7 6 30 30 H 1.09004 * 113.61260 * 203.66156 * 11 9 8 31 31 H 1.08993 * 113.61680 * 334.56965 * 11 9 8 32 32 H 1.08997 * 109.47403 * 207.50266 * 14 12 11 33 33 H 1.09000 * 109.47028 * 327.50833 * 14 12 11 34 34 H 1.07996 * 126.12617 * 359.97438 * 16 15 14 35 35 H 1.08006 * 126.03616 * 179.97438 * 17 16 15 36 36 H 1.07998 * 125.90080 * 179.97438 * 18 17 16 37 37 H 1.09004 * 113.61236 * 220.02647 * 20 12 11 38 38 H 1.09000 * 113.69289 * 89.13598 * 20 12 11 39 39 H 1.08002 * 120.76313 * 179.78600 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7104 1.2304 5 6 2.6386 -0.0202 2.1935 6 7 3.0844 -0.6313 3.2754 7 6 2.8732 -1.9214 3.4809 8 7 3.3609 -2.5248 4.6360 9 6 4.1040 -1.7321 5.6186 10 1 4.5846 -0.8573 5.1806 11 6 3.3015 -1.4208 6.8929 12 6 3.8509 -2.7420 7.4639 13 1 3.2295 -3.6086 7.2382 14 6 4.2378 -2.6571 8.9417 15 7 3.0661 -2.9499 9.7709 16 6 2.9888 -3.8957 10.7304 17 6 1.7443 -3.8457 11.2594 18 6 1.0371 -2.8344 10.6011 19 7 1.8303 -2.2928 9.7126 20 6 5.0406 -2.5703 6.5048 21 6 2.1617 -2.6796 2.5531 22 9 1.9424 -3.9953 2.7675 23 6 1.6868 -2.0664 1.4064 24 1 -0.3933 0.4417 0.7651 25 1 1.7923 -0.5138 -0.8900 26 1 3.5346 1.7703 0.0321 27 1 1.5614 2.4679 -1.2084 28 1 2.8298 1.0343 2.0605 29 1 3.2088 -3.4703 4.7906 30 1 3.6521 -0.5362 7.4245 31 1 2.2222 -1.4246 6.7409 32 1 5.0234 -3.3824 9.1539 33 1 4.5997 -1.6536 9.1655 34 1 3.7786 -4.5714 11.0235 35 1 1.3643 -4.4755 12.0503 36 1 0.0142 -2.5474 10.7954 37 1 5.3643 -3.5014 6.0397 38 1 5.8666 -1.9997 6.9294 39 1 1.1351 -2.6285 0.6674 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14687810_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:42:43 Heat of formation + Delta-G solvation = 83.850241 kcal Electronic energy + Delta-G solvation = -24157.203736 eV Core-core repulsion = 20405.145527 eV Total energy + Delta-G solvation = -3752.058209 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.128 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.01351 -42.05034 -41.52006 -40.26873 -37.93584 -35.76496 -33.85420 -33.19640 -31.30259 -30.86316 -28.52808 -26.74735 -26.40443 -25.32991 -23.79228 -23.00794 -21.91567 -21.56660 -20.41417 -19.47754 -18.51568 -18.26056 -18.10314 -17.54372 -17.06210 -16.55422 -16.34660 -16.12229 -15.89618 -15.59085 -15.42161 -15.17710 -14.82872 -14.69303 -14.46340 -14.33633 -14.03818 -13.69916 -13.59062 -13.47929 -13.37347 -12.88047 -12.58742 -12.17061 -12.15171 -11.85787 -11.58429 -11.21235 -11.14541 -10.75028 -10.69406 -10.43308 -10.32414 -9.48234 -8.80957 -4.97524 -0.12559 0.05990 1.01614 1.30918 1.66180 1.68444 1.90638 1.95843 1.99451 2.49674 2.97715 3.21955 3.36689 3.46070 3.51854 3.65194 3.70577 3.81368 3.82246 3.95779 4.03585 4.08606 4.22714 4.35982 4.39363 4.44604 4.50141 4.67420 4.72924 4.75960 4.79172 4.84080 4.92014 4.94818 5.06811 5.07777 5.16142 5.18730 5.43098 5.76115 5.97602 6.13044 6.19773 6.77051 6.79948 6.90620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.060 4.060 3 Si 0.774 3.226 4 C -0.206 4.206 5 C 0.150 3.850 6 N -0.523 5.523 7 C 0.384 3.616 8 N -0.698 5.698 9 C 0.129 3.871 10 H 0.103 0.897 11 C -0.132 4.132 12 C -0.114 4.114 13 H 0.077 0.923 14 C 0.135 3.865 15 N -0.376 5.376 16 C 0.051 3.949 17 C -0.293 4.293 18 C 0.024 3.976 19 N -0.329 5.329 20 C -0.122 4.122 21 C -0.040 4.040 22 F -0.142 7.142 23 C -0.041 4.041 24 H 0.396 0.604 25 H 0.111 0.889 26 H -0.279 1.279 27 H -0.296 1.296 28 H 0.187 0.813 29 H 0.413 0.587 30 H 0.095 0.905 31 H 0.044 0.956 32 H 0.127 0.873 33 H 0.092 0.908 34 H 0.205 0.795 35 H 0.159 0.841 36 H 0.193 0.807 37 H 0.083 0.917 38 H 0.122 0.878 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.555 0.404 3.146 4.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.170 4.170 3 Si 0.679 3.321 4 C -0.212 4.212 5 C -0.008 4.008 6 N -0.240 5.240 7 C 0.146 3.854 8 N -0.330 5.330 9 C 0.024 3.976 10 H 0.121 0.879 11 C -0.171 4.171 12 C -0.133 4.133 13 H 0.095 0.905 14 C 0.015 3.985 15 N -0.158 5.158 16 C -0.096 4.096 17 C -0.323 4.323 18 C -0.161 4.161 19 N -0.151 5.151 20 C -0.160 4.160 21 C -0.067 4.067 22 F -0.121 7.121 23 C -0.067 4.067 24 H 0.246 0.754 25 H 0.129 0.871 26 H -0.205 1.205 27 H -0.224 1.224 28 H 0.203 0.797 29 H 0.251 0.749 30 H 0.114 0.886 31 H 0.063 0.937 32 H 0.145 0.855 33 H 0.111 0.889 34 H 0.222 0.778 35 H 0.177 0.823 36 H 0.210 0.790 37 H 0.101 0.899 38 H 0.140 0.860 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.933 2.122 1.964 5.718 hybrid contribution -0.988 -2.532 -0.086 2.719 sum 3.945 -0.410 1.878 4.389 Atomic orbital electron populations 1.86482 1.17269 1.82165 1.50505 1.25020 0.85199 1.10766 0.96026 0.93805 0.78095 0.74755 0.85435 1.21011 1.05496 0.94206 1.00446 1.22725 0.90870 1.00216 0.86941 1.67336 1.25544 1.07185 1.23978 1.18543 0.90514 0.89205 0.87181 1.44308 1.58761 1.11850 1.18079 1.21871 0.92883 0.95342 0.87544 0.87873 1.23421 0.99503 0.97686 0.96524 1.22802 0.98725 0.98610 0.93144 0.90493 1.22062 0.83559 1.04353 0.88489 1.49006 1.10961 1.26767 1.29112 1.23184 1.00244 0.94583 0.91576 1.21858 0.95159 1.06394 1.08869 1.24318 1.00834 0.96207 0.94719 1.77328 0.92083 1.21466 1.24206 1.23330 0.96435 1.01299 0.94965 1.18159 1.09737 0.79500 0.99264 1.91462 1.93771 1.31914 1.94998 1.21446 0.95374 0.95054 0.94830 0.75436 0.87119 1.20542 1.22406 0.79708 0.74947 0.88648 0.93697 0.85543 0.88934 0.77811 0.82306 0.78984 0.89866 0.85971 0.82869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.42 12.84 -148.98 -1.91 -1.49 16 2 C -0.06 0.11 2.82 71.24 0.20 0.32 16 3 Si 0.77 -3.07 29.83 68.60 2.05 -1.02 16 4 C -0.21 0.01 5.36 -19.76 -0.11 -0.09 16 5 C 0.15 -0.02 9.84 84.61 0.83 0.81 16 6 N -0.52 -2.02 9.15 -193.04 -1.77 -3.79 16 7 C 0.38 1.78 7.49 133.09 1.00 2.77 16 8 N -0.70 -1.05 5.42 -321.79 -1.74 -2.79 16 9 C 0.13 -0.19 4.32 45.52 0.20 0.01 16 10 H 0.10 0.00 7.45 -2.39 -0.02 -0.02 16 11 C -0.13 -0.01 7.45 31.21 0.23 0.22 16 12 C -0.11 0.38 3.72 -10.17 -0.04 0.34 16 13 H 0.08 0.02 8.14 -2.39 -0.02 0.00 16 14 C 0.14 -0.62 6.35 86.38 0.55 -0.07 16 15 N -0.38 -0.85 3.68 -348.07 -1.28 -2.13 16 16 C 0.05 -0.01 11.45 83.54 0.96 0.95 16 17 C -0.29 -0.67 10.80 21.99 0.24 -0.43 16 18 C 0.02 0.13 12.03 85.23 1.02 1.15 16 19 N -0.33 -2.63 12.43 -57.03 -0.71 -3.33 16 20 C -0.12 0.83 7.38 31.12 0.23 1.06 16 21 C -0.04 -0.21 7.35 22.58 0.17 -0.04 16 22 F -0.14 -0.97 16.65 44.97 0.75 -0.22 16 23 C -0.04 -0.11 9.82 22.48 0.22 0.11 16 24 H 0.40 -3.37 8.70 -74.05 -0.64 -4.02 16 25 H 0.11 -0.13 7.96 -2.39 -0.02 -0.15 16 26 H -0.28 -0.10 7.11 99.48 0.71 0.61 16 27 H -0.30 -1.11 7.11 99.48 0.71 -0.40 16 28 H 0.19 -1.09 4.90 -2.91 -0.01 -1.11 16 29 H 0.41 0.12 8.18 -92.71 -0.76 -0.64 16 30 H 0.10 -0.07 7.90 -2.38 -0.02 -0.09 16 31 H 0.04 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.13 -1.34 8.07 -2.39 -0.02 -1.36 16 33 H 0.09 -0.49 7.85 -2.39 -0.02 -0.51 16 34 H 0.21 -1.66 8.06 -2.91 -0.02 -1.68 16 35 H 0.16 -0.24 8.06 -2.91 -0.02 -0.26 16 36 H 0.19 0.12 8.06 -2.91 -0.02 0.10 16 37 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 38 H 0.12 -1.29 8.10 -2.39 -0.02 -1.31 16 39 H 0.15 0.16 8.06 -2.91 -0.02 0.14 16 Total: 0.00 -19.53 336.14 0.82 -18.71 By element: Atomic # 1 Polarization: -10.78 SS G_CDS: -0.27 Total: -11.05 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 5.70 Total: 7.11 kcal Atomic # 7 Polarization: -6.54 SS G_CDS: -5.50 Total: -12.04 kcal Atomic # 8 Polarization: 0.42 SS G_CDS: -1.91 Total: -1.49 kcal Atomic # 9 Polarization: -0.97 SS G_CDS: 0.75 Total: -0.22 kcal Atomic # 14 Polarization: -3.07 SS G_CDS: 2.05 Total: -1.02 kcal Total: -19.53 0.82 -18.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687810_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.562 kcal (2) G-P(sol) polarization free energy of solvation -19.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds