Wall clock time and date at job start Mon Mar 8 2021 07:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86308 * 109.46971 * 2 1 4 4 C 1.50703 * 109.47593 * 119.99993 * 2 1 3 5 5 C 1.38600 * 120.71796 * 64.99730 * 4 2 1 6 6 N 1.32283 * 119.19467 * 179.74855 * 5 4 2 7 7 C 1.32486 * 120.73820 * 0.26146 * 6 5 4 8 8 N 1.38415 * 119.21415 * 179.97438 * 7 6 5 9 9 C 1.46494 * 119.99950 * 179.97438 * 8 7 6 10 10 H 1.09006 * 112.85250 * 334.66384 * 9 8 7 11 11 C 1.53777 * 113.61621 * 105.86372 * 9 8 7 12 12 C 1.54051 * 86.98829 * 89.16266 * 11 9 8 13 13 H 1.09002 * 113.60910 * 270.88474 * 12 11 9 14 14 C 1.52993 * 113.69793 * 139.99296 * 12 11 9 15 15 N 1.46502 * 109.47274 * 87.46640 * 14 12 11 16 16 C 1.34430 * 126.82240 * 125.00257 * 15 14 12 17 17 N 1.30826 * 108.07650 * 179.97438 * 16 15 14 18 18 C 1.33247 * 109.83028 * 359.97438 * 17 16 15 19 19 N 1.30711 * 108.94403 * 359.75868 * 18 17 16 20 20 C 1.53777 * 113.61420 * 203.47051 * 9 8 7 21 21 N 1.32494 * 121.57076 * 359.97187 * 7 6 5 22 22 C 1.32271 * 120.73880 * 0.02562 * 21 7 6 23 23 H 0.96702 * 114.00456 * 60.00093 * 1 2 3 24 24 H 1.09000 * 109.47417 * 240.00083 * 2 1 3 25 25 H 1.48501 * 109.99619 * 60.00013 * 3 2 1 26 26 H 1.48500 * 109.99919 * 181.31904 * 3 2 1 27 27 H 1.08002 * 120.40547 * 0.03443 * 5 4 2 28 28 H 0.96994 * 119.99772 * 359.97438 * 8 7 6 29 29 H 1.09006 * 113.61496 * 203.66497 * 11 9 8 30 30 H 1.09002 * 113.61677 * 334.56627 * 11 9 8 31 31 H 1.09001 * 109.46944 * 207.46597 * 14 12 11 32 32 H 1.08998 * 109.47081 * 327.46533 * 14 12 11 33 33 H 1.08001 * 125.96121 * 359.97438 * 16 15 14 34 34 H 1.07999 * 125.52634 * 179.97438 * 18 17 16 35 35 H 1.08998 * 113.61564 * 25.43247 * 20 9 8 36 36 H 1.09001 * 113.61881 * 156.33230 * 20 9 8 37 37 H 1.08004 * 120.40394 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6926 -2.0633 1.4140 6 7 2.1519 -2.6576 2.5029 7 6 2.8281 -1.9734 3.4138 8 7 3.2937 -2.6269 4.5416 9 6 4.0439 -1.8872 5.5595 10 1 4.5435 -1.0049 5.1594 11 6 3.2377 -1.6112 6.8396 12 6 3.7588 -2.9635 7.3621 13 1 3.1226 -3.8082 7.0975 14 6 4.1365 -2.9457 8.8446 15 7 2.9534 -3.2489 9.6536 16 6 2.8342 -4.2220 10.5735 17 7 1.6263 -4.1630 11.0725 18 6 0.9483 -3.1694 10.4992 19 7 1.7207 -2.5765 9.6272 20 6 4.9584 -2.7765 6.4183 21 7 3.0693 -0.6785 3.2709 22 6 2.6381 -0.0240 2.2055 23 1 -0.3934 0.4417 -0.7650 24 1 1.7923 -0.5138 -0.8900 25 1 1.5613 2.4679 1.2085 26 1 3.5345 1.7704 -0.0321 27 1 1.1424 -2.6265 0.6747 28 1 3.1233 -3.5747 4.6579 29 1 3.6004 -0.7546 7.4079 30 1 2.1596 -1.5891 6.6805 31 1 4.9066 -3.6940 9.0323 32 1 4.5158 -1.9592 9.1110 33 1 3.6016 -4.9290 10.8519 34 1 -0.0725 -2.8959 10.7217 35 1 5.2686 -3.6945 5.9192 36 1 5.7907 -2.2380 6.8716 37 1 2.8382 1.0315 2.0943 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14687812_12175864.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:42:47 Heat of formation + Delta-G solvation = 159.221075 kcal Electronic energy + Delta-G solvation = -21967.820949 eV Core-core repulsion = 18557.633219 eV Total energy + Delta-G solvation = -3410.187731 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.96991 -42.13514 -40.57834 -37.98640 -36.08611 -34.76349 -34.46877 -32.17425 -32.09258 -29.16386 -26.91679 -26.59025 -25.96540 -24.44637 -23.11386 -22.87480 -22.40613 -20.62512 -19.61862 -18.59106 -18.31928 -18.28764 -16.93341 -16.72715 -16.55468 -16.25829 -15.99951 -15.73489 -15.45302 -15.33548 -15.09479 -14.80123 -14.73316 -14.20302 -14.01156 -13.70656 -13.31174 -13.15374 -12.91999 -12.42254 -12.24247 -11.99310 -11.86017 -11.79290 -11.41824 -11.20565 -10.90504 -10.70840 -10.60393 -10.58575 -9.97289 -9.13759 -5.07755 0.02905 0.14253 0.70645 1.19393 1.33205 1.56164 1.71614 1.87060 2.07864 2.75395 3.04982 3.11581 3.29774 3.35113 3.41300 3.46327 3.54876 3.61429 3.71286 3.86169 3.87047 3.97181 3.99726 4.08484 4.23131 4.40920 4.44258 4.50332 4.56024 4.62805 4.71772 4.86137 5.00595 5.02900 5.26849 5.32749 5.51389 5.76353 5.83834 5.97176 6.35542 6.56978 7.16942 7.26111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.051 4.051 3 Si 0.681 3.319 4 C -0.247 4.247 5 C 0.227 3.773 6 N -0.567 5.567 7 C 0.570 3.430 8 N -0.677 5.677 9 C 0.135 3.865 10 H 0.109 0.891 11 C -0.135 4.135 12 C -0.123 4.123 13 H 0.095 0.905 14 C 0.138 3.862 15 N -0.379 5.379 16 C 0.251 3.749 17 N -0.547 5.547 18 C 0.196 3.804 19 N -0.312 5.312 20 C -0.137 4.137 21 N -0.559 5.559 22 C 0.194 3.806 23 H 0.384 0.616 24 H 0.076 0.924 25 H -0.248 1.248 26 H -0.253 1.253 27 H 0.173 0.827 28 H 0.415 0.585 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.218 0.782 34 H 0.216 0.784 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.501 1.045 -4.211 5.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.163 4.163 3 Si 0.582 3.418 4 C -0.255 4.255 5 C 0.059 3.941 6 N -0.289 5.289 7 C 0.214 3.786 8 N -0.313 5.313 9 C 0.028 3.972 10 H 0.127 0.873 11 C -0.174 4.174 12 C -0.142 4.142 13 H 0.113 0.887 14 C 0.016 3.984 15 N -0.170 5.170 16 C -0.046 4.046 17 N -0.274 5.274 18 C -0.107 4.107 19 N -0.140 5.140 20 C -0.176 4.176 21 N -0.281 5.281 22 C 0.027 3.973 23 H 0.232 0.768 24 H 0.094 0.906 25 H -0.173 1.173 26 H -0.177 1.177 27 H 0.190 0.810 28 H 0.252 0.748 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.234 0.766 34 H 0.232 0.768 35 H 0.098 0.902 36 H 0.122 0.878 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.262 1.358 -2.465 5.107 hybrid contribution -0.192 -0.643 -0.486 0.829 sum 4.069 0.715 -2.951 5.077 Atomic orbital electron populations 1.86496 1.17256 1.81825 1.49836 1.24308 0.85640 1.10001 0.96326 0.95056 0.80923 0.78126 0.87740 1.20735 1.07931 0.97036 0.99825 1.22835 0.88804 0.90891 0.91604 1.67983 1.16459 1.39997 1.04446 1.19305 0.87075 0.85458 0.86780 1.43766 1.58251 1.11623 1.17657 1.21814 0.92579 0.95733 0.87038 0.87269 1.23498 1.01547 0.96415 0.95969 1.22955 0.98722 1.00130 0.92377 0.88702 1.21913 0.83214 1.03606 0.89688 1.50595 1.11542 1.24285 1.30543 1.26124 0.96558 0.92933 0.88967 1.70560 1.04231 1.22890 1.29709 1.26071 1.01002 0.91359 0.92281 1.78095 0.91509 1.20437 1.23913 1.23375 0.96731 1.01010 0.96488 1.67889 1.27064 1.08355 1.24795 1.22628 0.89069 0.98906 0.86709 0.76835 0.90591 1.17301 1.17718 0.81015 0.74766 0.88806 0.90667 0.87749 0.88924 0.76577 0.76760 0.90154 0.87841 0.82509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.34 12.82 -35.23 -0.45 -0.11 16 2 C -0.05 0.05 2.82 36.01 0.10 0.15 16 3 Si 0.68 -1.29 29.92 -169.99 -5.09 -6.37 16 4 C -0.25 -0.53 5.40 -104.35 -0.56 -1.09 16 5 C 0.23 0.58 10.99 -17.22 -0.19 0.39 16 6 N -0.57 -2.35 10.46 -13.93 -0.15 -2.49 16 7 C 0.57 2.26 8.42 -322.80 -2.72 -0.46 16 8 N -0.68 -0.89 5.41 -55.01 -0.30 -1.19 16 9 C 0.13 -0.05 4.30 -67.13 -0.29 -0.34 16 10 H 0.11 0.07 7.41 -51.93 -0.38 -0.31 16 11 C -0.14 0.02 7.45 -25.78 -0.19 -0.17 16 12 C -0.12 0.26 3.74 -89.67 -0.34 -0.08 16 13 H 0.09 -0.07 8.14 -51.93 -0.42 -0.49 16 14 C 0.14 -0.39 6.39 -4.04 -0.03 -0.41 16 15 N -0.38 -0.22 3.69 -62.63 -0.23 -0.45 16 16 C 0.25 0.09 12.63 -90.66 -1.14 -1.05 16 17 N -0.55 -1.86 11.19 -15.83 -0.18 -2.03 16 18 C 0.20 0.57 13.03 -91.81 -1.20 -0.63 16 19 N -0.31 -1.03 12.58 29.29 0.37 -0.66 16 20 C -0.14 0.44 7.38 -25.92 -0.19 0.25 16 21 N -0.56 -2.41 9.15 -13.93 -0.13 -2.53 16 22 C 0.19 0.62 9.92 -17.23 -0.17 0.45 16 23 H 0.38 -2.17 8.74 45.56 0.40 -1.78 16 24 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 25 H -0.25 -0.32 7.06 56.52 0.40 0.08 16 26 H -0.25 -0.13 7.11 56.52 0.40 0.28 16 27 H 0.17 0.01 8.06 -52.49 -0.42 -0.42 16 28 H 0.41 0.11 8.82 -40.82 -0.36 -0.25 16 29 H 0.09 -0.05 7.91 -51.93 -0.41 -0.46 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.10 -0.59 8.09 -51.93 -0.42 -1.01 16 32 H 0.09 -0.29 7.85 -51.93 -0.41 -0.70 16 33 H 0.22 -0.89 8.06 -52.49 -0.42 -1.31 16 34 H 0.22 -0.01 8.06 -52.49 -0.42 -0.43 16 35 H 0.08 -0.27 8.14 -51.93 -0.42 -0.70 16 36 H 0.10 -0.48 8.10 -51.93 -0.42 -0.90 16 37 H 0.16 0.29 5.04 -52.48 -0.26 0.02 16 LS Contribution 320.38 15.07 4.83 4.83 Total: 0.00 -10.59 320.38 -12.66 -23.25 By element: Atomic # 1 Polarization: -4.83 SS G_CDS: -4.42 Total: -9.25 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -6.92 Total: -2.99 kcal Atomic # 7 Polarization: -8.75 SS G_CDS: -0.61 Total: -9.36 kcal Atomic # 8 Polarization: 0.34 SS G_CDS: -0.45 Total: -0.11 kcal Atomic # 14 Polarization: -1.29 SS G_CDS: -5.09 Total: -6.37 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -10.59 -12.66 -23.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687812_12175864.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.471 kcal (2) G-P(sol) polarization free energy of solvation -10.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds