Wall clock time and date at job start Mon Mar 8 2021 07:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86308 * 109.46971 * 2 1 4 4 C 1.50703 * 109.47593 * 119.99993 * 2 1 3 5 5 C 1.38600 * 120.71796 * 64.99730 * 4 2 1 6 6 N 1.32283 * 119.19467 * 179.74855 * 5 4 2 7 7 C 1.32486 * 120.73820 * 0.26146 * 6 5 4 8 8 N 1.38415 * 119.21415 * 179.97438 * 7 6 5 9 9 C 1.46494 * 119.99950 * 179.97438 * 8 7 6 10 10 H 1.09006 * 112.85250 * 334.66384 * 9 8 7 11 11 C 1.53777 * 113.61621 * 105.86372 * 9 8 7 12 12 C 1.54051 * 86.98829 * 89.16266 * 11 9 8 13 13 H 1.09002 * 113.60910 * 270.88474 * 12 11 9 14 14 C 1.52993 * 113.69793 * 139.99296 * 12 11 9 15 15 N 1.46502 * 109.47274 * 87.46640 * 14 12 11 16 16 C 1.34430 * 126.82240 * 125.00257 * 15 14 12 17 17 N 1.30826 * 108.07650 * 179.97438 * 16 15 14 18 18 C 1.33247 * 109.83028 * 359.97438 * 17 16 15 19 19 N 1.30711 * 108.94403 * 359.75868 * 18 17 16 20 20 C 1.53777 * 113.61420 * 203.47051 * 9 8 7 21 21 N 1.32494 * 121.57076 * 359.97187 * 7 6 5 22 22 C 1.32271 * 120.73880 * 0.02562 * 21 7 6 23 23 H 0.96702 * 114.00456 * 60.00093 * 1 2 3 24 24 H 1.09000 * 109.47417 * 240.00083 * 2 1 3 25 25 H 1.48501 * 109.99619 * 60.00013 * 3 2 1 26 26 H 1.48500 * 109.99919 * 181.31904 * 3 2 1 27 27 H 1.08002 * 120.40547 * 0.03443 * 5 4 2 28 28 H 0.96994 * 119.99772 * 359.97438 * 8 7 6 29 29 H 1.09006 * 113.61496 * 203.66497 * 11 9 8 30 30 H 1.09002 * 113.61677 * 334.56627 * 11 9 8 31 31 H 1.09001 * 109.46944 * 207.46597 * 14 12 11 32 32 H 1.08998 * 109.47081 * 327.46533 * 14 12 11 33 33 H 1.08001 * 125.96121 * 359.97438 * 16 15 14 34 34 H 1.07999 * 125.52634 * 179.97438 * 18 17 16 35 35 H 1.08998 * 113.61564 * 25.43247 * 20 9 8 36 36 H 1.09001 * 113.61881 * 156.33230 * 20 9 8 37 37 H 1.08004 * 120.40394 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6926 -2.0633 1.4140 6 7 2.1519 -2.6576 2.5029 7 6 2.8281 -1.9734 3.4138 8 7 3.2937 -2.6269 4.5416 9 6 4.0439 -1.8872 5.5595 10 1 4.5435 -1.0049 5.1594 11 6 3.2377 -1.6112 6.8396 12 6 3.7588 -2.9635 7.3621 13 1 3.1226 -3.8082 7.0975 14 6 4.1365 -2.9457 8.8446 15 7 2.9534 -3.2489 9.6536 16 6 2.8342 -4.2220 10.5735 17 7 1.6263 -4.1630 11.0725 18 6 0.9483 -3.1694 10.4992 19 7 1.7207 -2.5765 9.6272 20 6 4.9584 -2.7765 6.4183 21 7 3.0693 -0.6785 3.2709 22 6 2.6381 -0.0240 2.2055 23 1 -0.3934 0.4417 -0.7650 24 1 1.7923 -0.5138 -0.8900 25 1 1.5613 2.4679 1.2085 26 1 3.5345 1.7704 -0.0321 27 1 1.1424 -2.6265 0.6747 28 1 3.1233 -3.5747 4.6579 29 1 3.6004 -0.7546 7.4079 30 1 2.1596 -1.5891 6.6805 31 1 4.9066 -3.6940 9.0323 32 1 4.5158 -1.9592 9.1110 33 1 3.6016 -4.9290 10.8519 34 1 -0.0725 -2.8959 10.7217 35 1 5.2686 -3.6945 5.9192 36 1 5.7907 -2.2380 6.8716 37 1 2.8382 1.0315 2.0943 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14687812_12175864.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:42:46 Heat of formation + Delta-G solvation = 159.939468 kcal Electronic energy + Delta-G solvation = -21967.789797 eV Core-core repulsion = 18557.633219 eV Total energy + Delta-G solvation = -3410.156579 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.01457 -42.30166 -40.53673 -37.92490 -36.10921 -34.96096 -34.50602 -32.26247 -32.17824 -29.11255 -26.85688 -26.59047 -26.13934 -24.45045 -23.21674 -22.89274 -22.42146 -20.58777 -19.76128 -18.63573 -18.27953 -18.27305 -16.92403 -16.72033 -16.60403 -16.37250 -16.06717 -15.82656 -15.43596 -15.29603 -15.09975 -14.87616 -14.72024 -14.17213 -14.00071 -13.63302 -13.26544 -13.18033 -12.88680 -12.41489 -12.27131 -12.08070 -11.99496 -11.85267 -11.32585 -11.25756 -11.00835 -10.82755 -10.63583 -10.58354 -10.06274 -9.25499 -4.96667 -0.17064 -0.04825 0.67790 1.29653 1.42965 1.62424 1.65304 1.95329 1.97736 2.57853 2.89389 3.26049 3.38218 3.40130 3.43463 3.50190 3.53066 3.62121 3.73843 3.85109 3.92555 4.06743 4.08285 4.18096 4.39468 4.49828 4.53978 4.55110 4.66247 4.70044 4.75533 4.94790 4.97841 5.02919 5.22726 5.31314 5.42386 5.62770 5.86109 5.92583 6.22544 6.94764 7.07809 7.10410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.054 4.054 3 Si 0.772 3.228 4 C -0.252 4.252 5 C 0.218 3.782 6 N -0.585 5.585 7 C 0.553 3.447 8 N -0.672 5.672 9 C 0.126 3.874 10 H 0.097 0.903 11 C -0.137 4.137 12 C -0.111 4.111 13 H 0.081 0.919 14 C 0.132 3.868 15 N -0.378 5.378 16 C 0.256 3.744 17 N -0.585 5.585 18 C 0.182 3.818 19 N -0.346 5.346 20 C -0.114 4.114 21 N -0.578 5.578 22 C 0.175 3.825 23 H 0.406 0.594 24 H 0.104 0.896 25 H -0.297 1.297 26 H -0.286 1.286 27 H 0.196 0.804 28 H 0.418 0.582 29 H 0.096 0.904 30 H 0.039 0.961 31 H 0.145 0.855 32 H 0.099 0.901 33 H 0.260 0.740 34 H 0.228 0.772 35 H 0.090 0.910 36 H 0.127 0.873 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.715 0.280 -4.773 6.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.377 6.377 2 C -0.166 4.166 3 Si 0.678 3.322 4 C -0.260 4.260 5 C 0.050 3.950 6 N -0.308 5.308 7 C 0.196 3.804 8 N -0.308 5.308 9 C 0.020 3.980 10 H 0.115 0.885 11 C -0.176 4.176 12 C -0.131 4.131 13 H 0.099 0.901 14 C 0.011 3.989 15 N -0.169 5.169 16 C -0.040 4.040 17 N -0.313 5.313 18 C -0.120 4.120 19 N -0.174 5.174 20 C -0.152 4.152 21 N -0.301 5.301 22 C 0.008 3.992 23 H 0.258 0.742 24 H 0.122 0.878 25 H -0.225 1.225 26 H -0.213 1.213 27 H 0.213 0.787 28 H 0.256 0.744 29 H 0.115 0.885 30 H 0.057 0.943 31 H 0.162 0.838 32 H 0.117 0.883 33 H 0.276 0.724 34 H 0.245 0.755 35 H 0.108 0.892 36 H 0.145 0.855 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.474 0.592 -3.066 6.303 hybrid contribution -0.573 -0.360 -0.309 0.745 sum 4.901 0.231 -3.376 5.956 Atomic orbital electron populations 1.86441 1.17166 1.82427 1.51624 1.24435 0.85850 1.10457 0.95826 0.94142 0.77536 0.75531 0.85007 1.21089 1.07215 0.97140 1.00570 1.23309 0.88621 0.91406 0.91624 1.68025 1.17039 1.40523 1.05165 1.19608 0.87553 0.85643 0.87596 1.43875 1.57939 1.11783 1.17240 1.21948 0.93140 0.96265 0.86600 0.88513 1.23468 0.99276 0.98083 0.96763 1.22798 0.98808 0.98018 0.93439 0.90097 1.22256 0.82774 1.05464 0.88365 1.50778 1.11392 1.23948 1.30789 1.26922 0.96474 0.92764 0.87828 1.70539 1.05812 1.23756 1.31186 1.26425 1.01799 0.91494 0.92306 1.78019 0.92977 1.21776 1.24640 1.23309 0.96280 1.00815 0.94806 1.67874 1.27910 1.08744 1.25535 1.22895 0.89771 0.99350 0.87149 0.74238 0.87827 1.22499 1.21257 0.78744 0.74350 0.88514 0.94251 0.83767 0.88274 0.72428 0.75546 0.89172 0.85471 0.82115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 1.20 12.82 -148.98 -1.91 -0.71 16 2 C -0.05 0.14 2.82 71.24 0.20 0.34 16 3 Si 0.77 -2.75 29.92 68.60 2.05 -0.70 16 4 C -0.25 -1.25 5.40 -19.69 -0.11 -1.35 16 5 C 0.22 1.24 10.99 84.71 0.93 2.17 16 6 N -0.59 -5.61 10.46 -197.98 -2.07 -7.68 16 7 C 0.55 5.39 8.42 261.49 2.20 7.59 16 8 N -0.67 -2.79 5.41 -327.94 -1.78 -4.57 16 9 C 0.13 0.03 4.30 45.52 0.20 0.22 16 10 H 0.10 0.27 7.41 -2.38 -0.02 0.26 16 11 C -0.14 -0.16 7.45 31.21 0.23 0.07 16 12 C -0.11 0.49 3.74 -10.18 -0.04 0.46 16 13 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 14 C 0.13 -0.93 6.39 86.38 0.55 -0.38 16 15 N -0.38 -0.29 3.69 -352.07 -1.30 -1.59 16 16 C 0.26 -0.04 12.63 180.36 2.28 2.24 16 17 N -0.58 -4.22 11.19 -204.00 -2.28 -6.51 16 18 C 0.18 1.31 13.03 180.76 2.36 3.67 16 19 N -0.35 -2.71 12.58 -61.24 -0.77 -3.48 16 20 C -0.11 0.86 7.38 31.12 0.23 1.09 16 21 N -0.58 -6.22 9.15 -197.98 -1.81 -8.03 16 22 C 0.18 1.43 9.92 84.72 0.84 2.27 16 23 H 0.41 -5.20 8.74 -74.06 -0.65 -5.85 16 24 H 0.10 -0.80 7.96 -2.39 -0.02 -0.82 16 25 H -0.30 -1.30 7.06 99.48 0.70 -0.60 16 26 H -0.29 -0.51 7.11 99.48 0.71 0.20 16 27 H 0.20 -0.06 8.06 -2.91 -0.02 -0.08 16 28 H 0.42 0.75 8.82 -92.71 -0.82 -0.07 16 29 H 0.10 0.02 7.91 -2.38 -0.02 0.00 16 30 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.14 -2.14 8.09 -2.39 -0.02 -2.16 16 32 H 0.10 -0.78 7.85 -2.39 -0.02 -0.79 16 33 H 0.26 -2.80 8.06 -2.91 -0.02 -2.82 16 34 H 0.23 0.43 8.06 -2.91 -0.02 0.41 16 35 H 0.09 -0.78 8.14 -2.39 -0.02 -0.79 16 36 H 0.13 -1.51 8.10 -2.39 -0.02 -1.52 16 37 H 0.16 0.93 5.04 -2.91 -0.01 0.92 16 Total: 0.00 -28.10 320.38 -0.30 -28.40 By element: Atomic # 1 Polarization: -13.22 SS G_CDS: -0.31 Total: -13.53 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 9.87 Total: 18.39 kcal Atomic # 7 Polarization: -21.84 SS G_CDS: -10.01 Total: -31.85 kcal Atomic # 8 Polarization: 1.20 SS G_CDS: -1.91 Total: -0.71 kcal Atomic # 14 Polarization: -2.75 SS G_CDS: 2.05 Total: -0.70 kcal Total: -28.10 -0.30 -28.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14687812_12175864.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.339 kcal (2) G-P(sol) polarization free energy of solvation -28.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds